Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g54350 | OGI:01094430 | 15/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:31275097-31279534 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TACAAGAAAAATGTGAAATGTTACTGGAGGCTGTAATGGCCTGCCTTCGTACAGACTACTAGAATTTCCATGTACTGCTGCTTCAAAAGCCCAAGAAAGCAGGCCTAATCTACCCCAGTGTGGCGGACAGGCCGAACAAACCGAAGAAACAATTTTCAAGGAATTGCATAGAGACATTTCTGTCACTTGTATCAAACAGTGTAACAGACGAAACAAAAAGAAGAAAATGTCACTAGCAAAGCTAAGCAAATGTTTACTGTGCTATAAAATCGCGAAGACAAACACATATATTTTTCCTATATAACAAAGCAAAAAATTGACAGTTACATTCTGAGGCCTATCCGATTAGCATAGTTTGGAAGGGAGAGGATTAACTACATCAATTTTGGTGGCGGAGGTCCAGAGAGATCATGATGGGTATGTTTGAGCTTCTGGACCCAGTGAGCTAGCCAATTCTTGTGATCATGAGTTCCTTGCAAGTTTAAGCATGGCATATTGTCCAGTGTTCCATCTTTATCTAGAACCGCCTTAAACTTGTCCAATATCTGTACTATTTGCCAGAATTCAGGCCTTTTATCTGGTTGCGAGGCCCAACATTGCTCAATTAGAAGCCGTAGTGGCGCAGGGCAGCTACTGGGGATGACCGGCCTCTCGTTCTGAAAAATGGAGTTTTCGTCATTTTCCAAAAGAAAATCAAATAGCCATAGGATCATGGAACTGAAGATATATTTGGTTGTTACTTCATCTGTTTTCAAATAATTGGCATTGTTACTATTTATGTTTAAACTTTGACCGCTTCTCTTTTTTTTGCAAACAAATTATAGATACGTGCAAATATGTCATGTTTATCGAAGCTTGAAATATCATAAATATAACCATAAAACTTTCATACATCATAGTATTATCATTTAAAAGTAATTTGTGATCAAAGTGAGATGGTCGTAGTCAACAGTGACAGTTAGGGTGTGTTTAGTTCACGCTAAAATTGAAAGTTTAATTGAAATTGGAACGATTTGACGCAAAAGTTGAAAGTTTATGTGTAGGAAAGTTTTGATGTGATGGAAAAGTTGGGAACTAAACCAGGCCGACTAGCTAGAAACGACTCAACATGTTTTATCTTATGCAATGATTCTTCGTTTTGAAGAGACGATAATCAAGCAACTGAACATGTATTACCTTATCAAAAACAGCAAAAGGTCCTCATGCAGTATGCAGATAAGAACAGGAAAACAAATTCATACCTTATCAAAAACAGCAAAAGCTGCCTGGAATGGATTCAAGTCTTCATAAGGTACCGACCCGGTAAACATTTCCCATAAGATAAGGCCAAAGCTGTAAACATCAACCTTTCGACCATAAGGTTTGTGCTTCATCATCTCTGGAGCCATCCATCTGAAAGTCCCAGTGTCATTCGCCAGAGGGTCACACTCTGCTTCTTCACAAGATATTCCAAAATCAACAATCTTCGCACAAAATTCTGAATCAAATATGATGTTCTCTGGTTTCACATCACGATGAACAACTCCTTGTGAGTGAATATATCCAATGCCATTTGCAATATCCAAACCAATTGAAATGATCTTCTCTAAAGGTAGAGATTTGTGCTCCTGCTTGTGCAGAAATGTTCTTAAAGAACCCCCAGAAAGAAACTCGGTGATGACACAAAAGACAGGTGGGCTACTGCATGCTCCAATCAGCTACATGGACAAAACAGCGATAATGAATACAGTAACGTTTATCTTTTAGTGCACACATAAATCACACAATATTTACTATTACTCTATTAGGGACAACTATTAAATGCCATATACTACATTCAGTATGCATGAGTGCATGACCAACTCTCCTAGGTGAGCTACTAATACTTGCCCTTCGGGGTAAAAAGGAAAGTACTCCAACTCAGCTGGAGGAACTGCAGAAGCTAGCTACGCTGTCTAGGAAATACATAAGCCACGAATTACAGCCTTACAGGTCAATTAAATAATTTCTCTTCGTATATAATTTATATCTTGCATATCTTGTCTAGCATGCTTGATAGTTGATCCAAATAGAATCTAAGCGCAAATACTCCCAAATAAAATAGCTCGAAAAAGTACAGTATAAGTCAATAGAACAGTGCTAACTACAAGCAATTCCTCGGAAGTTCATGCTAATCCACAACCACTCCAGAATTGAAACAGGCGTAATCGAAATTCATGAGGTTACCTTAATGACATTAGGATGGTTCAGGCGGGACAGTGTGGTGACCTCCGTGTTGAACTGCTTTTCAAGCTGCGCGGCCAGCTCTGCATCTTCCTCATCCTCAGGTTGCCTGATGAACTTCACGGCGACAGGCTGCTCCTTGTAGATTCCATGGAACAAGCGACTGTGCGCCCCGGAGGCGAACCTGTGCCCGATGAGCAGCTGCGAGCGATCGACGGTCCATTTCTCGAGCACCTCAAGTGCGGCGACCTTCGCCCTTCCATTGGCAGAGGAATCCTTCTTATGCTTCGGCTTGCCATGCGCTCTCGCCGTGGCAAAGACATGAGGAGGGCTCCTGCTCGGCGCCGGTGGAGACGAAGGCTTCCGGCGCGGTGGCGGTGTGGAAAACCTCTTGCTTGACGATTTGGCCTCCTTGAACAGCTCAGGAACGTCACGACGCAGGGGAGGGGACCTTGCTCTCTGCTTCGGCTTCGGCTTCGGCCCCTCGCCGGCAACCTTGAGAGATGAGCTACGTGCTGCAGCATCAGCCACCAGCATGTTCTTGTTGCTTGGGAAAGGAACAGGGCTGGAACACGCCCTCTGCAGCCTCAAGGTTTGCTCATCAGGATGGAAGGAGAACTCGAGAGGCCCAGATGTGGCTGTTGCCTTCGTGTCATTTTCAGCCTTATCATCCTGCTTGGTGGACACTTCTTGCGACGGCTGATGATCACGAGGCTTCTCTTGCTGCTCCGGTTTGGCGTCCGAGGAGGACGAAGCTGTCTTTGTCTCTGACAACGGCTGGGCATTCGACGATCCTGTCGTCCACGGAACAGAGGAATTCGCCGAGGTGGTGGCCGAGAGCCTCGTCCTTGGTTCCAAGTTGAGGCTCTTCTCGTGCTGCTCCAGTTTGGCGTCCGAGGACGACGAAGCTGGCTTCGTCTCCGACGATGGCTGAGCATTCGACGATCCTGTCGTCCTCGGAACGGAGGAATTCGCCGAGGTGGTGGCTGGGAGCCTCGCCCTCGGTTCCAAGTTGAGGCCATGGAGCATGAACCCTGAACCGGGCCCTCTCTGCCTCCGTGCCGCGCCGCGGTTGAACTGCTCGACGAATGCACCGAACTGCTCCCTGCCGGACTTGGAGCGGACGACGGAGTGGGAGAACCTTGTCCGCCGAACCCACGAGTAATCCTCCTCGTCCATCTCCTCCTAATCTCACGGTGACCACACACACAGAGATGATCTCGGTGCAAACGGATGAGGTGTAAATAGATTTGAGCTGGATTAAAGAAACCTCGATGAGAAAAACCCAGATCCTAGAACATCCCACAACTCATTGAACAGGCGCCACATTTGCAATCTCAATCACGTATAGGAATCTCCAATCTTGTGCGCTGCTCGATTGCTCTGACTTGAGCATCAATTCCACCAGATTCCATGAACTGGCTCCCGCCTCCTGAGTCAAATCATCAGGAACAAAAAGCACGAAATCAAAAACAGGAAACCACCAGGCAGGAGCAGCTGTCTATAAAAACTAAAAGTCGAAGAACAAAACGAGAACGAACGCTTCGATTGGTCAAACAACACGTTCTTTTTCCAACAGAAAAGTATGGATGGATCAGACGACGAACCGTGCAGGCAAGAGCAAAGAGCAAAAGAGAAGAACAAAACGAAGGCGTGCAGGAAGCATCACATGCGGGAAAGCGGAGAGCAAGGCAGAGAGAGAGGCGTGAACCCGAAGCAGGTGGCGCAACTGAGAAGATCAAACCAAAGAATTCAAATCCCCATTCCACACCCCACCCCACCCCACCCCGCCCCGCCCCGCGAAGCTCCCTCACGCAACCTGTATCCAAGATCGGAACGAGATGACGCTTACCCGATTCGGAAGAGAGACGTCGCCGGCGCCGGTGCGCCCCCCGCTCCGGCCCAAACAAAGCGGAGGAAGAAAGGCGGGCAGCGATGACGGCGCGTGGGCGGAGAACGGAGGAAAAGCCTTCCCTCTCTTCCGGCGCGCGTGGCGTGGGAATTTTCGCGCGGAGACGGGGGTGTGGTGTGGTGGGTGGGGGTGGGGCGGGGACGAGAGAGAGAAATGAGAATGTTGCGGTGGCGGCAGTCGCGATCGATTACCGGTCGAGTCGAGTTGATGAGAGCGCAACCACGACGAGAGGGGGGCACCAGATCCTATTCCGATCCTCCCACCACCTCAATCTCTTCCCCCCTCCCTGCGCGTCTCGAACACGAAAAAATCGGGGCACGAATC
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| CDS seq | ATGGACGAGGAGGATTACTCGTGGGTTCGGCGGACAAGGTTCTCCCACTCCGTCGTCCGCTCCAAGTCCGGCAGGGAGCAGTTCGGTGCATTCGTCGAGCAGTTCAACCGCGGCGCGGCACGGAGGCAGAGAGGGCCCGGTTCAGGGTTCATGCTCCATGGCCTCAACTTGGAACCGAGGGCGAGGCTCCCAGCCACCACCTCGGCGAATTCCTCCGTTCCGAGGACGACAGGATCGTCGAATGCTCAGCCATCGTCGGAGACGAAGCCAGCTTCGTCGTCCTCGGACGCCAAACTGGAGCAGCACGAGAAGAGCCTCAACTTGGAACCAAGGACGAGGCTCTCGGCCACCACCTCGGCGAATTCCTCTGTTCCGTGGACGACAGGATCGTCGAATGCCCAGCCGTTGTCAGAGACAAAGACAGCTTCGTCCTCCTCGGACGCCAAACCGGAGCAGCAAGAGAAGCCTCGTGATCATCAGCCGTCGCAAGAAGTGTCCACCAAGCAGGATGATAAGGCTGAAAATGACACGAAGGCAACAGCCACATCTGGGCCTCTCGAGTTCTCCTTCCATCCTGATGAGCAAACCTTGAGGCTGCAGAGGGCGTGTTCCAGCCCTGTTCCTTTCCCAAGCAACAAGAACATGCTGGTGGCTGATGCTGCAGCACGTAGCTCATCTCTCAAGGTTGCCGGCGAGGGGCCGAAGCCGAAGCCGAAGCAGAGAGCAAGGTCCCCTCCCCTGCGTCGTGACGTTCCTGAGCTGTTCAAGGAGGCCAAATCGTCAAGCAAGAGGTTTTCCACACCGCCACCGCGCCGGAAGCCTTCGTCTCCACCGGCGCCGAGCAGGAGCCCTCCTCATGTCTTTGCCACGGCGAGAGCGCATGGCAAGCCGAAGCATAAGAAGGATTCCTCTGCCAATGGAAGGGCGAAGGTCGCCGCACTTGAGGTGCTCGAGAAATGGACCGTCGATCGCTCGCAGCTGCTCATCGGGCACAGGTTCGCCTCCGGGGCGCACAGTCGCTTGTTCCATGGAATCTACAAGGAGCAGCCTGTCGCCGTGAAGTTCATCAGGCAACCTGAGGATGAGGAAGATGCAGAGCTGGCCGCGCAGCTTGAAAAGCAGTTCAACACGGAGGTCACCACACTGTCCCGCCTGAACCATCCTAATGTCATTAAGCTGATTGGAGCATGCAGTAGCCCACCTGTCTTTTGTGTCATCACCGAGTTTCTTTCTGGGGGTTCTTTAAGAACATTTCTGCACAAGCAGGAGCACAAATCTCTACCTTTAGAGAAGATCATTTCAATTGGTTTGGATATTGCAAATGGCATTGGATATATTCACTCACAAGGAGTTGTTCATCGTGATGTGAAACCAGAGAACATCATATTTGATTCAGAATTTTGTGCGAAGATTGTTGATTTTGGAATATCTTGTGAAGAAGCAGAGTGTGACCCTCTGGCGAATGACACTGGGACTTTCAGATGGATGGCTCCAGAGATGATGAAGCACAAACCTTATGGTCGAAAGGTTGATGTTTACAGCTTTGGCCTTATCTTATGGGAAATGTTTACCGGGTCGGTACCTTATGAAGACTTGAATCCATTCCAGGCAGCTTTTGCTGTTTTTGATAAGAACGAGAGGCCGGTCATCCCCAGTAGCTGCCCTGCGCCACTACGGCTTCTAATTGAGCAATGTTGGGCCTCGCAACCAGATAAAAGGCCTGAATTCTGGCAAATAGTACAGATATTGGACAAGTTTAAGGCGGTTCTAGATAAAGATGGAACACTGGACAATATGCCATGCTTAAACTTGCAAGGAACTCATGATCACAAGAATTGGCTAGCTCACTGGGTCCAGAAGCTCAAACATACCCATCATGATCTCTCTGGACCTCCGCCACCAAAATTGATGTAG
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| Protein seq | MDEEDYSWVRRTRFSHSVVRSKSGREQFGAFVEQFNRGAARRQRGPGSGFMLHGLNLEPRARLPATTSANSSVPRTTGSSNAQPSSETKPASSSSDAKLEQHEKSLNLEPRTRLSATTSANSSVPWTTGSSNAQPLSETKTASSSSDAKPEQQEKPRDHQPSQEVSTKQDDKAENDTKATATSGPLEFSFHPDEQTLRLQRACSSPVPFPSNKNMLVADAAARSSSLKVAGEGPKPKPKQRARSPPLRRDVPELFKEAKSSSKRFSTPPPRRKPSSPPAPSRSPPHVFATARAHGKPKHKKDSSANGRAKVAALEVLEKWTVDRSQLLIGHRFASGAHSRLFHGIYKEQPVAVKFIRQPEDEEDAELAAQLEKQFNTEVTTLSRLNHPNVIKLIGACSSPPVFCVITEFLSGGSLRTFLHKQEHKSLPLEKIISIGLDIANGIGYIHSQGVVHRDVKPENIIFDSEFCAKIVDFGISCEEAECDPLANDTGTFRWMAPEMMKHKPYGRKVDVYSFGLILWEMFTGSVPYEDLNPFQAAFAVFDKNERPVIPSSCPAPLRLLIEQCWASQPDKRPEFWQIVQILDKFKAVLDKDGTLDNMPCLNLQGTHDHKNWLAHWVQKLKHTHHDLSGPPPPKLM |
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| Function | Serine/threonine/tyrosine-protein kinase HT1 [UniProtKB/Swiss-Prot:Q2MHE4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g54350 | LOC_Os01g54350.1 | Chr01 | 31275097 | 31279534 | - | MSU_osa1r7 | ||
| CDS seq | ATGGACGAGGAGGATTACTCGTGGGTTCGGCGGACAAGGTTCTCCCACTCCGTCGTCCGCTCCAAGTCCGGCAGGGAGCAGTTCGGTGCATTCGTCGAGCAGTTCAACCGCGGCGCGGCACGGAGGCAGAGAGGGCCCGGTTCAGGGTTCATGCTCCATGGCCTCAACTTGGAACCGAGGGCGAGGCTCCCAGCCACCACCTCGGCGAATTCCTCCGTTCCGAGGACGACAGGATCGTCGAATGCTCAGCCATCGTCGGAGACGAAGCCAGCTTCGTCGTCCTCGGACGCCAAACTGGAGCAGCACGAGAAGAGCCTCAACTTGGAACCAAGGACGAGGCTCTCGGCCACCACCTCGGCGAATTCCTCTGTTCCGTGGACGACAGGATCGTCGAATGCCCAGCCGTTGTCAGAGACAAAGACAGCTTCGTCCTCCTCGGACGCCAAACCGGAGCAGCAAGAGAAGCCTCGTGATCATCAGCCGTCGCAAGAAGTGTCCACCAAGCAGGATGATAAGGCTGAAAATGACACGAAGGCAACAGCCACATCTGGGCCTCTCGAGTTCTCCTTCCATCCTGATGAGCAAACCTTGAGGCTGCAGAGGGCGTGTTCCAGCCCTGTTCCTTTCCCAAGCAACAAGAACATGCTGGTGGCTGATGCTGCAGCACGTAGCTCATCTCTCAAGGTTGCCGGCGAGGGGCCGAAGCCGAAGCCGAAGCAGAGAGCAAGGTCCCCTCCCCTGCGTCGTGACGTTCCTGAGCTGTTCAAGGAGGCCAAATCGTCAAGCAAGAGGTTTTCCACACCGCCACCGCGCCGGAAGCCTTCGTCTCCACCGGCGCCGAGCAGGAGCCCTCCTCATGTCTTTGCCACGGCGAGAGCGCATGGCAAGCCGAAGCATAAGAAGGATTCCTCTGCCAATGGAAGGGCGAAGGTCGCCGCACTTGAGGTGCTCGAGAAATGGACCGTCGATCGCTCGCAGCTGCTCATCGGGCACAGGTTCGCCTCCGGGGCGCACAGTCGCTTGTTCCATGGAATCTACAAGGAGCAGCCTGTCGCCGTGAAGTTCATCAGGCAACCTGAGGATGAGGAAGATGCAGAGCTGGCCGCGCAGCTTGAAAAGCAGTTCAACACGGAGGTCACCACACTGTCCCGCCTGAACCATCCTAATGTCATTAAGCTGATTGGAGCATGCAGTAGCCCACCTGTCTTTTGTGTCATCACCGAGTTTCTTTCTGGGGGTTCTTTAAGAACATTTCTGCACAAGCAGGAGCACAAATCTCTACCTTTAGAGAAGATCATTTCAATTGGTTTGGATATTGCAAATGGCATTGGATATATTCACTCACAAGGAGTTGTTCATCGTGATGTGAAACCAGAGAACATCATATTTGATTCAGAATTTTGTGCGAAGATTGTTGATTTTGGAATATCTTGTGAAGAAGCAGAGTGTGACCCTCTGGCGAATGACACTGGGACTTTCAGATGGATGGCTCCAGAGATGATGAAGCACAAACCTTATGGTCGAAAGGTTGATGTTTACAGCTTTGGCCTTATCTTATGGGAAATGTTTACCGGGTCGGTACCTTATGAAGACTTGAATCCATTCCAGGCAGCTTTTGCTGTTTTTGATAAGAACGAGAGGCCGGTCATCCCCAGTAGCTGCCCTGCGCCACTACGGCTTCTAATTGAGCAATGTTGGGCCTCGCAACCAGATAAAAGGCCTGAATTCTGGCAAATAGTACAGATATTGGACAAGTTTAAGGCGGTTCTAGATAAAGATGGAACACTGGACAATATGCCATGCTTAAACTTGCAAGGAACTCATGATCACAAGAATTGGCTAGCTCACTGGGTCCAGAAGCTCAAACATACCCATCATGATCTCTCTGGACCTCCGCCACCAAAATTGATGTAG
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| Protein seq | MDEEDYSWVRRTRFSHSVVRSKSGREQFGAFVEQFNRGAARRQRGPGSGFMLHGLNLEPRARLPATTSANSSVPRTTGSSNAQPSSETKPASSSSDAKLEQHEKSLNLEPRTRLSATTSANSSVPWTTGSSNAQPLSETKTASSSSDAKPEQQEKPRDHQPSQEVSTKQDDKAENDTKATATSGPLEFSFHPDEQTLRLQRACSSPVPFPSNKNMLVADAAARSSSLKVAGEGPKPKPKQRARSPPLRRDVPELFKEAKSSSKRFSTPPPRRKPSSPPAPSRSPPHVFATARAHGKPKHKKDSSANGRAKVAALEVLEKWTVDRSQLLIGHRFASGAHSRLFHGIYKEQPVAVKFIRQPEDEEDAELAAQLEKQFNTEVTTLSRLNHPNVIKLIGACSSPPVFCVITEFLSGGSLRTFLHKQEHKSLPLEKIISIGLDIANGIGYIHSQGVVHRDVKPENIIFDSEFCAKIVDFGISCEEAECDPLANDTGTFRWMAPEMMKHKPYGRKVDVYSFGLILWEMFTGSVPYEDLNPFQAAFAVFDKNERPVIPSSCPAPLRLLIEQCWASQPDKRPEFWQIVQILDKFKAVLDKDGTLDNMPCLNLQGTHDHKNWLAHWVQKLKHTHHDLSGPPPPKLM
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.830362 | 1.389737 | 0.635397 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0747400 | RBH | 3.009079 | 2.263457 | 2.744158 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g44290 | RBH | 0.642011 | 0.411640 | 1.319824 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0747400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0033440 | RBH | 0.461995 | 12.309299 | 2.425297 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0032960 | RBH | 0.133309 | 0.734114 | 2.622617 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0033400 | RBH | 1.116006 | 0.774391 | 3.147262 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0032660 | RBH | 0.028086 | 0.091046 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0032430 | RBH | 4.046308 | 7.122228 | 8.576097 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0433400 | SBH | 5.303554 | 8.505974 | 12.309381 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0032140 | RBH | 0.182934 | 0.325143 | 0.686847 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0513600 | RBH | 4.1723575 | 25.917039 | 0.5081545 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0032320 | RBH | 0.392322 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0032390 | RBH | 0.405297 | 1.044979 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0032620 | RBH | 10.430895 | 4.339686 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0032710 | RBH | 0.566933 | 0.493851 | 0.629473 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0032510 | RBH | 0.277503 | 3.785875 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G032970 | RBH | 0.215584 | 1.834501 | 1.386223 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0032600 | RBH | 1.478474 | 13.714063 | 4.837892 |
