Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g53500 | OGI:01092790 | 14/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:30730645-30731238 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCACCTGCTGCGCCTCCGATCGGCGGCGTACTGCGAGAGCGGGACGAGCTCCGACAGCGGCGTCGCCAGCGGCGTGGCCACCGGCGTGGGGATGGGCGAGGACCTGCACACGGGGCACGACGCGTTCCGGCGCAGCCAGGCGTCGAGGCAGCAGACGTGGAACCTGTGCCTGCAGTCGGGCATCACGCGCAGCATCTCCCCGTCCGCGTACTCGCTGAGGCAGATCGAGCACATGGCGTCGGCGTCCGCGCCGGCGCCGCTGTAGAAGGGGACCTTCGGGTACGACGCGATGGCCGCGGGGTCGAGCCCCACGGGGGACGACGCGGCCGCGACGCCCGAGGAGTAGGCGTCGGGGGACTCGGACCCCTCCGCGACGAAGAGCACGCGCGGGACGGTGATGGAGAGGTGGCTGGAGCTGGAGCTCGGGGTGAGCACGCCGGAGAAGTGCCCGCCGCCGCCCCCGCGGCGGAAGCAGAAGTATGACGCGAGGAGGAGCGACGCGAGCAGGACGAGGAATCCCAGCGCGATGGCGATCGAGTACCCGAGGCCGAGCGTGGCGAGCGAGGAGAGCAGCGAAGAGGATGAGGAGGACAT
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| CDS seq | ATGTCCTCCTCATCCTCTTCGCTGCTCTCCTCGCTCGCCACGCTCGGCCTCGGGTACTCGATCGCCATCGCGCTGGGATTCCTCGTCCTGCTCGCGTCGCTCCTCCTCGCGTCATACTTCTGCTTCCGCCGCGGGGGCGGCGGCGGGCACTTCTCCGGCGTGCTCACCCCGAGCTCCAGCTCCAGCCACCTCTCCATCACCGTCCCGCGCGTGCTCTTCGTCGCGGAGGGGTCCGAGTCCCCCGACGCCTACTCCTCGGGCGTCGCGGCCGCGTCGTCCCCCGTGGGGCTCGACCCCGCGGCCATCGCGTCGTACCCGAAGGTCCCCTTCTACAGCGGCGCCGGCGCGGACGCCGACGCCATGTGCTCGATCTGCCTCAGCGAGTACGCGGACGGGGAGATGCTGCGCGTGATGCCCGACTGCAGGCACAGGTTCCACGTCTGCTGCCTCGACGCCTGGCTGCGCCGGAACGCGTCGTGCCCCGTGTGCAGGTCCTCGCCCATCCCCACGCCGGTGGCCACGCCGCTGGCGACGCCGCTGTCGGAGCTCGTCCCGCTCTCGCAGTACGCCGCCGATCGGAGGCGCAGCAGGTGA
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| Protein seq | MSSSSSSLLSSLATLGLGYSIAIALGFLVLLASLLLASYFCFRRGGGGGHFSGVLTPSSSSSHLSITVPRVLFVAEGSESPDAYSSGVAAASSPVGLDPAAIASYPKVPFYSGAGADADAMCSICLSEYADGEMLRVMPDCRHRFHVCCLDAWLRRNASCPVCRSSPIPTPVATPLATPLSELVPLSQYAADRRRSR |
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| Function | RING-H2 finger protein ATL68 [UniProtKB/Swiss-Prot:Q9M313] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g53500 | LOC_Os01g53500.1 | Chr01 | 30730645 | 30731238 | - | MSU_osa1r7 | ||
| CDS seq | ATGTCCTCCTCATCCTCTTCGCTGCTCTCCTCGCTCGCCACGCTCGGCCTCGGGTACTCGATCGCCATCGCGCTGGGATTCCTCGTCCTGCTCGCGTCGCTCCTCCTCGCGTCATACTTCTGCTTCCGCCGCGGGGGCGGCGGCGGGCACTTCTCCGGCGTGCTCACCCCGAGCTCCAGCTCCAGCCACCTCTCCATCACCGTCCCGCGCGTGCTCTTCGTCGCGGAGGGGTCCGAGTCCCCCGACGCCTACTCCTCGGGCGTCGCGGCCGCGTCGTCCCCCGTGGGGCTCGACCCCGCGGCCATCGCGTCGTACCCGAAGGTCCCCTTCTACAGCGGCGCCGGCGCGGACGCCGACGCCATGTGCTCGATCTGCCTCAGCGAGTACGCGGACGGGGAGATGCTGCGCGTGATGCCCGACTGCAGGCACAGGTTCCACGTCTGCTGCCTCGACGCCTGGCTGCGCCGGAACGCGTCGTGCCCCGTGTGCAGGTCCTCGCCCATCCCCACGCCGGTGGCCACGCCGCTGGCGACGCCGCTGTCGGAGCTCGTCCCGCTCTCGCAGTACGCCGCCGATCGGAGGCGCAGCAGGTGA
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| Protein seq | MSSSSSSLLSSLATLGLGYSIAIALGFLVLLASLLLASYFCFRRGGGGGHFSGVLTPSSSSSHLSITVPRVLFVAEGSESPDAYSSGVAAASSPVGLDPAAIASYPKVPFYSGAGADADAMCSICLSEYADGEMLRVMPDCRHRFHVCCLDAWLRRNASCPVCRSSPIPTPVATPLATPLSELVPLSQYAADRRRSR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.115598 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0736600 | RBH | 0.0 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g45060 | RBH | 0.0 | 0.0 | 0.121129 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0736600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0032840 | RBH | 0.0 | 0.0 | 4.359143 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0032340 | RBH | 0.0 | 0.0 | 1.425224 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0032770 | RBH | 0.0 | 0.0 | 3.557442 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0032060 | RBH | 0.0 | 0.050719 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0031750 | RBH | 0.0 | 0.0 | 5.617946 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0526400 | SBH | 3.8766685 | 44.186781 | 11.0153685 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0031450 | RBH | 0.0 | 0.0 | 0.527342 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0522000 | SBH | 5.528393 | 69.572119 | 5.2357335 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0031690 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0031740 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0031920 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0032080 | RBH | 0.0 | 0.0 | 0.846546 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0031860 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G032320 | RBH | 0.058607 | 0.724495 | 2.192565 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0031980 | RBH | 0.405890 | 3.387359 | 1.340730 |
