Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g52840 | OGI:01091680 | 2/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:30389668-30391804 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTACCCTAATTGTTCGTCATCTAAATAAAGGTTTTCGAACTGTGCGGCCAATTCTTGGTTGTCAGCAGTGTATTGGGCATGTTCTGCAGCAAGTTCCCAGTCTTTGACGCTTAATAGTATTTCCACATGATCGCTGCTCAGACTTGTTCTCCTATCCTCGATAATTCTTCCGCATAGACTGAAGGCTGATTCGGAGGATACCGAAGATACGGGCACCGTCAACACATCCCGTGCTAGTTTTGATAGCACAGGATATGACATCTTATGATCATTCCACCACCCGAGTACGTTGAAGTCTGACGTTTCATGCCTGATGGCATCGCTATCCAAATAGTTGGACAACTCTTCGGCAGGACCATGCGATCTAGCATCTCCACTTGCTGCTGATGAACTGGTACCACCACCATGGCTAGAAGATGAACCGCCCCAAATTCTGCTCCACTGTAATTTTTTCTTACCTGCTGCAAGGACAGGTGGGGGTCTTTGCAAGCGATCTCCCTGAAACTTTAATTCATACTTTCGAAATACCTCATAGAATTTAGTTTTGACATCAGCATAATAGGTAGAATAATCAACATTAATAATATCTCCAATAAGTGAAAGAATATTGAGGAATCCCCGTAATTTTCCCCTAGGATCAAGAATAAATGCAAAAGAATACAACATGAGGATATCTTTCCAATATTTAAGATATTTTTGTTTCATATTAAAGACAACGGGCATTAAAAGGTCATCATTTTCATACTCTTTCAACAAAGTGGCAATTTCAAGAATATTATGCAAAATTAAATTAGCTGTTGGATAATATACTTGAGATAACAGAAGAGTACAGTCATGAAACGTTTCAAGAAATTGATTGAACCTTTCAACAATGTGCCAGGTATGATCAGTCAGTATTGGCTGGCCGTCACTGTTTTTTGGGCCATTACATGTTTGAAGGAAAACAGTAAGTAAATCCTTGTAAGGTAATACAACCTTTAACATAAAATAAATGGCATTCCACCGATGGTCTGCATCGGTTAAAAACTTACGTGGGGGCTCACCCGATGCACAACAATACCTTTTCCACTGTGCAATCCGTGGGTTTGAAGCAGTTAACCACGTGATTGCTTGACGAACAGCGTCGATCTGTACATTAACTCTCTTAAACCCACATTTAACAATTAGATTAATGATATGGCATGCACAACGCTGATGCAGAAGAAATGATTGAGCATAAATACAAAATAATGGTTGTAGAATTTCCATGGCCCTAGAATTTGCAGATGCATTATCCATTGTTACAGCAAAAATTTTATCTGCAAGGTTAAACTCATCAATAACCTCTCGAATTCTCTCTGCTATATTTTCACCAGTATGTGAAACATCAATTAACCTTAAGCCAAGAACTCTTTTTTGCATTTGCCAATCATCATCAATGAAATGTACAACTACACTAAGGTAATCCTCTTTAGCCCTACTACTCCATATGTCTGAGGTGACACTGACAGAAAAGGTGCATGTACTTAATAATTCCTTCAGTGATTCATAACCTTTGTCATAGACATTTTTCAAATCACGGGTTGTGGTTTGTCTACTAACAGCTTGAAACCTAGGATTATGAGAATTTTTTTATGTAATTTTCAAATGCAGGACTCTCACCAAAGTTCAAGGGTAAATCTTGTCTAGCAATTAAACGGGCAAGATTTTCTCGAGCTACCATAGGATCATACTCCCACGTACGTACCGTACCATCAGGATTTAGTAGTAGTTGTTGCTGTCGTAGTTGGATTCCTTGCTTCTTTGCACAAGCCTCGGCATGCCGCTTCAAATGTCCTATTCCACCAGATGATTTTGCAGATAACTTATTTTTGCATATTCTACATCTCGCGAATGTTACCTGCCTTCCATCAGGGCCTGTCACGGCCACCTCATCGAAATGTTGCCAAACACCGGAAGTTCTTGATCTCTTTGAGCCGGTGTTCGTCGATGCACTCCCACTCATAGCGCCGGATGCTTCTGAACCCGCTGGTGGCTCCATAACTGGTGGTGTTGGAGCCGATCCGGTGGCATCATACTCACCAGTTGGGAATGACCTCGACACGTAGTTAGGGTCGAAATCACCTAACGTGAACGATGGAATGTTCGATTCGTCCAT
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| CDS seq | ATGGACGAATCGAACATTCCATCGTTCACGTTAGGTGATTTCGACCCTAACTACGTGTCGAGGTCATTCCCAACTGGTGAGTATGATGCCACCGGATCGGCTCCAACACCACCAGTTATGGAGCCACCAGCGGGTTCAGAAGCATCCGGCGCTATGAGTGGGAGTGCATCGACGAACACCGGCTCAAAGAGATCAAGAACTTCCGGTGTTTGGCAACATTTCGATGAGGTGGCCGTGACAGGCCCTGATGGAAGGCAGGTAACATTCGCGAGATGTAGAATATGCAAAAATAAGTTATCTGCAAAATCATCTGGTGGAATAGGACATTTGAAGCGGCATGCCGAGGCTTGTGCAAAGAAGCAAGGAATCCAACTACGACAGCAACAACTACTACTAAATCCTGATGGTACGGAATTATTAAGTACATGCACCTTTTCTGTCAGTGTCACCTCAGACATATGGAGTAGTAGGGCTAAAGAGGATTACCTTAGTGTAGTTGTACATTTCATTGATGATGATTGGCAAATGCAAAAAAGAGTTCTTGGCTTAAGGTTAATTGATGTTTCACATACTGGTGAAAATATAGCAGAGAGAATTCGAGAGGTTATTGATGAGTTTAACCTTGCAGATAAAATTTTTGCTGTAACAATGGATAATGCATCTGCAAATTCTAGGGCCATGGAAATTCTACAACCATTATTTTGTATTTATGCTCAATCATTTCTTCTGCATCAGCGTTGTGCATGCCATATCATTAATCTAATTGTTAAATGTGGGTTTAAGAGAGTTAATGTACAGATCGACGCTGTTCGTCAAGCAATCACGTGGTTAACTGCTTCAAACCCACGGATTGCACAGTGGAAAAGGTATTGTTGTGCATCGGGTGAGCCCCCACAGTATGAAAATGATGACCTTTTAATGCCCGTTGTCTTTAATATGAAACAAAAATATCTTAAATATTGGAAAGATATCCTCATGTTGTATTCTTTTGCATTTATTCTTGATCCTAGGGGAAAATTACGGGGATTCCTCAATATTCTTTCACTTATTGGAGATATTATTAATGTTGATTATTCTACCTATTATGCTGATGTCAAAACTAAATTCTATGAGGTATTTCGAAAGTATGAATTAAAGTTTCAGGGAGATCGCTTGCAAAGACCCCCACCTGTCCTTGCAGCAGGTAAGAAAAAATTACAGTGGAGCAGAATTTGGGGCGGTTCATCTTCTAGCCATGGTGGTGGTACCAGTTCATCAGCAGCAAGTGGAGATGCTAGATCGCATGGTCCTGCCGAAGAGTTGTCCAACTATTTGGATAGCGATGCCATCAGGCATGAAACGTCAGACTTCAACGTACTCGGGTGGTGGAATGATCATAAGATGTCATATCCTGTGCTATCAAAACTAGCACGGGATGTGTTGACGGTGCCCGTATCTTCGGTATCCTCCGAATCAGCCTTCAGTCTATGCGGAAGAATTATCGAGGATAGGAGAACAAGTCTGAGCAGCGATCATGTGGAAATACTATTAAGCGTCAAAGACTGGGAACTTGCTGCAGAACATGCCCAATACACTGCTGACAACCAAGAATTGGCCGCACAGTTCGAAAACCTTTATTTAGATGACGAACAATTAGGGTAG
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| Protein seq | MDESNIPSFTLGDFDPNYVSRSFPTGEYDATGSAPTPPVMEPPAGSEASGAMSGSASTNTGSKRSRTSGVWQHFDEVAVTGPDGRQVTFARCRICKNKLSAKSSGGIGHLKRHAEACAKKQGIQLRQQQLLLNPDGTELLSTCTFSVSVTSDIWSSRAKEDYLSVVVHFIDDDWQMQKRVLGLRLIDVSHTGENIAERIREVIDEFNLADKIFAVTMDNASANSRAMEILQPLFCIYAQSFLLHQRCACHIINLIVKCGFKRVNVQIDAVRQAITWLTASNPRIAQWKRYCCASGEPPQYENDDLLMPVVFNMKQKYLKYWKDILMLYSFAFILDPRGKLRGFLNILSLIGDIINVDYSTYYADVKTKFYEVFRKYELKFQGDRLQRPPPVLAAGKKKLQWSRIWGGSSSSHGGGTSSSAASGDARSHGPAEELSNYLDSDAIRHETSDFNVLGWWNDHKMSYPVLSKLARDVLTVPVSSVSSESAFSLCGRIIEDRRTSLSSDHVEILLSVKDWELAAEHAQYTADNQELAAQFENLYLDDEQLG |
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| Function | Putative AC transposase [UniProtKB/Swiss-Prot:P08770] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g52840 | LOC_Os01g52840.1 | Chr01 | 30389668 | 30391804 | - | MSU_osa1r7 | ||
| CDS seq | ATGGACGAATCGAACATTCCATCGTTCACGTTAGGTGATTTCGACCCTAACTACGTGTCGAGGTCATTCCCAACTGGTGAGTATGATGCCACCGGATCGGCTCCAACACCACCAGTTATGGAGCCACCAGCGGGTTCAGAAGCATCCGGCGCTATGAGTGGGAGTGCATCGACGAACACCGGCTCAAAGAGATCAAGAACTTCCGGTGTTTGGCAACATTTCGATGAGGTGGCCGTGACAGGCCCTGATGGAAGGCAGGTAACATTCGCGAGATGTAGAATATGCAAAAATAAGTTATCTGCAAAATCATCTGGTGGAATAGGACATTTGAAGCGGCATGCCGAGGCTTGTGCAAAGAAGCAAGGAATCCAACTACGACAGCAACAACTACTACTAAATCCTGATGGTACGGAATTATTAAGTACATGCACCTTTTCTGTCAGTGTCACCTCAGACATATGGAGTAGTAGGGCTAAAGAGGATTACCTTAGTGTAGTTGTACATTTCATTGATGATGATTGGCAAATGCAAAAAAGAGTTCTTGGCTTAAGGTTAATTGATGTTTCACATACTGGTGAAAATATAGCAGAGAGAATTCGAGAGGTTATTGATGAGTTTAACCTTGCAGATAAAATTTTTGCTGTAACAATGGATAATGCATCTGCAAATTCTAGGGCCATGGAAATTCTACAACCATTATTTTGTATTTATGCTCAATCATTTCTTCTGCATCAGCGTTGTGCATGCCATATCATTAATCTAATTGTTAAATGTGGGTTTAAGAGAGTTAATGTACAGATCGACGCTGTTCGTCAAGCAATCACGTGGTTAACTGCTTCAAACCCACGGATTGCACAGTGGAAAAGGTATTGTTGTGCATCGGGTGAGCCCCCACAGTATGAAAATGATGACCTTTTAATGCCCGTTGTCTTTAATATGAAACAAAAATATCTTAAATATTGGAAAGATATCCTCATGTTGTATTCTTTTGCATTTATTCTTGATCCTAGGGGAAAATTACGGGGATTCCTCAATATTCTTTCACTTATTGGAGATATTATTAATGTTGATTATTCTACCTATTATGCTGATGTCAAAACTAAATTCTATGAGGTATTTCGAAAGTATGAATTAAAGTTTCAGGGAGATCGCTTGCAAAGACCCCCACCTGTCCTTGCAGCAGGTAAGAAAAAATTACAGTGGAGCAGAATTTGGGGCGGTTCATCTTCTAGCCATGGTGGTGGTACCAGTTCATCAGCAGCAAGTGGAGATGCTAGATCGCATGGTCCTGCCGAAGAGTTGTCCAACTATTTGGATAGCGATGCCATCAGGCATGAAACGTCAGACTTCAACGTACTCGGGTGGTGGAATGATCATAAGATGTCATATCCTGTGCTATCAAAACTAGCACGGGATGTGTTGACGGTGCCCGTATCTTCGGTATCCTCCGAATCAGCCTTCAGTCTATGCGGAAGAATTATCGAGGATAGGAGAACAAGTCTGAGCAGCGATCATGTGGAAATACTATTAAGCGTCAAAGACTGGGAACTTGCTGCAGAACATGCCCAATACACTGCTGACAACCAAGAATTGGCCGCACAGTTCGAAAACCTTTATTTAGATGACGAACAATTAGGGTAG
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| Protein seq | MDESNIPSFTLGDFDPNYVSRSFPTGEYDATGSAPTPPVMEPPAGSEASGAMSGSASTNTGSKRSRTSGVWQHFDEVAVTGPDGRQVTFARCRICKNKLSAKSSGGIGHLKRHAEACAKKQGIQLRQQQLLLNPDGTELLSTCTFSVSVTSDIWSSRAKEDYLSVVVHFIDDDWQMQKRVLGLRLIDVSHTGENIAERIREVIDEFNLADKIFAVTMDNASANSRAMEILQPLFCIYAQSFLLHQRCACHIINLIVKCGFKRVNVQIDAVRQAITWLTASNPRIAQWKRYCCASGEPPQYENDDLLMPVVFNMKQKYLKYWKDILMLYSFAFILDPRGKLRGFLNILSLIGDIINVDYSTYYADVKTKFYEVFRKYELKFQGDRLQRPPPVLAAGKKKLQWSRIWGGSSSSHGGGTSSSAASGDARSHGPAEELSNYLDSDAIRHETSDFNVLGWWNDHKMSYPVLSKLARDVLTVPVSSVSSESAFSLCGRIIEDRRTSLSSDHVEILLSVKDWELAAEHAQYTADNQELAAQFENLYLDDEQLG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0698300 | SBH | 0.749589 | 0.867366 | 1.800701 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g44620 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0698300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0000411 | SBH | 0.0 | 0.0 | 0.075276 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0030290 | SBH | 2.456088 | 9.163258 | 11.191405 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0397000 | SBH | 0.043993 | 0.048375 | 0.0167755 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0028951 | SBH | 0.108553 | 0.431461 | 0.467108 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0497100 | RBH | 0.0646585 | 0.353578 | 0.0425565 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
