Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g52790 | OGI:01013090 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:30372204-30376917 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CGACAAGTACCATTCATGTTTTATAATATAATAACAATAAAAGTACTGATCATAAAAAAAATACGGGCGATCAAAGTTAGACACAAAAAACTCATGGGTGCGCTTATTTTAGGATGGAGGGAGTACATATTTAGTAATAAAATTATCACAAAACTACATTGTTGGCACCATGTTAAGTACAAAACTTGCAACATTTATAACTCTAACGTAACATTAGTGGCAGAGATTTAAACTATAAAACCTGTAGTTTTGTGATAACTCTAGTATTAAATCTATAGTTTTGTACTTGGCCCTAAATTTGTAGTTCTCTAATAAATATTGTGTTAAATCTATAGTTTGTGATAATTTGATTAAAATACATGTAGTTTTATGAAATTTATTCATATAGATTTAGATTTCAGCATGTACGGGGTAGCTTTATGTTCTCCTCGACCGAGATCACTAGAGCTTCTTCAATTTAATTGGAGAACCGTACTGTGGTTGGAGAGTTAGCACGGTGTGTGGTGCGTGGGTGTATGACGGCGAGAGCTCGAAGGAGAAGCTCTGGAGGATGGTGGCGAGCGCCATCTTGGCTTCCAGAATTGCAAAGCTCTGGCCAAGGCAGATCCGAGGACCCCATGCAAACGAAAAGAACGCGGTCTGAAACTTCGTTGCCTTGGAGACTCCGTTGGCGAACCTTTCCGGGTTGAATTTGATTGCATCTTGTCCCCAGATGCTAGGATCGTGGTGAATGGATAGAACAGGCAATGTGAAGTTCACTCCTTCAGGGTATTTGATGCCACCAAGCTCTATTTCCTTGTGTGTTGTTCTTTGGAGGAATACCACCGGTGGGTACAACCTAAGAACCTCGTGGAGAATCATCGTTACCTGCAAAAATACAACAAAGATAAATGCGGTTGATACAATTATTCTGAGCATTTTTAGATGATGAAAGTATAACTTAAAGCCTCTACACCAACTAAACATGTGCAGGCGTATTTGTAAACATCATGATTTGAGTTAAAGTCATGTACCCACAACTTCACCACTGTCCACCATAACAATGGTACAAAGATTTTAAATTTAGGCCCCGTTAGACCTTCACATTTGGAGATAAATGTAGGTTGCACACAAAACGAGAAATCTCATTAGTACATGGTTAATTAACTATTAATTATTACAATTAATGAATTTATTTGTTTTTTAAAAGCAACTTTTATATAGATTTTTTTTTAAAAAAAAAGACGCACCATTTAACAGTTTGAAAAGAGTGCTAATGGAAAACAAGGAAGTTGGAGTTTGGAGTTGAAGAATAGAACAGGGCCTTGGAACATACTTCCTCTATCCTAAAATGTAAGTTTCTTACATGGTCTTCACATATTAGAACTTTAGCCATTAATTCTTTTTTTTTGCATAACATATATCACAAATTACATAATCAGCATCATATAAATACTTTCAAATAAAAATCTAATGATGTTATATGCATAAAACTAAAAATATATATTGCTAATTTAATTACTAGTCGAAAGTTGTAAATGTTGTCTTTCCTTAAAATATGGACACCTTACAATTAGGATGAAGGGAGCAAATCTCTGGAATTAGCTAGTATTTCACTTGATTGTGGAAAAGATAGATTCCATAAGCATATTTACTAATCAATTTTGATGGGGAATAGACAAAAGGTTGACATGTTTTTGAACAATTTGTTCTGAAGCCGTAGAAAATTATTCTGGCAATGAAATCTCAAAATGAACTGAAGTTTATATAAACTACTTTGCTATTTTGGAAAACATCAGAGAATGTTGAAGTCATACTTACAATCTTTAGACGACTCAAGCCATCATGATCTGGTGTGGTTCTTCCAAAATGGTGCATCACTTCCTCTCTTGCCTGCTCTTGCCATTCAGGGTGCATGCTTAGCAGAATTAAAGTCCAAGTGAGCAACATTGATGTTGTCTCCGAACCAGCAGCGTAAAATAACTTGCATTCCTCAATCATATCTTCTATACTCATTCCCACATCTTCTTTTTCATTTGATTGCCTCATATTCGATTCCACCAATAATCCCAACAAATCATCATTGCTACCTTCACCATTTCTAACTGCCTTGTCTCTTTTTACTATTATTCCTCGCAGAATTGTGCGGATTTCTTGATCAATTTCCCTGATCCTTCTGTTGTTTTCGATTGGTAAGTACCTACAGAAATATAAAAAGGATGAAAAAAAAGTAGTTTTGACATCTGTATATATGTATGCTGCATCAAAATGTATGTCCACAAACACATTCATTCTCTTAGAAAACAAAAATCAACTATGTACTTCTCTTGCAAATCCTTTCATCTATATATAAAAAAAGAATACTACTTTTCTTTAAGCTTCTGTATTTCGTGTATCATATGTTTTTTTCATTTCACAATGCACTAGAAAGCTTATAAAACGGTGTGTTATGTCAAATAGTCCAACAACTTAGTTTATAATTATCTTTCTTACCTTCTTAATCTTGCCTAATAAATAATGATATTGTTCTCATAATAAAAGGACTTATATTTTCCATTTGCGATATAAAATGAAGGGTAAAAGAACAATTCAATCTACTTTCATAATTGTCTGTACTAATCTAAAGAATTACTCTATATTAGAGGGGAGGCAAAAGTTTTTCCTTATTTCAATGATAGAGAAGATAATAATAGCAACTGTTTGTCAAATTATTGGAAATTTACTCCCAGAAGTCCATTTTCCCCCTCCAAATGTATAAAAAGCAAAGTACCAACCAGTAGCCTGGGATAAAGATTCTCTGAAAAGCTTTAAGTACGCGTTTAGCTTGCTCTTCTTGTAACTGAAAAATTCTCCACCCCTCCTGGTAGCTGCTCCCAAATGCCGTTCTTGAGATGACATCTCCAGTAAGATTTTGAAATTCATCCCAAACGTCTAACTCAGATATTCCTTCTGAAGACATTGAATTCACCCATCTAGTGATCATTTTGGTGCAACATGCTAAAAACACTGGCAGCATCCGCTGTGAGCAAAAGATAACTGTTAATCAATTCAGATTTTAGGGAGGGCATATCCCACGAAAAATAGTATGAATTCTACACTATATAAAGTTAGAAAATAAAAGCAGCGGAAAACAATATTACTACACGGACCTATCATGTGGAAATATGCTGTGCTAAGAGTTGAAAATGTGAAAAATGTGCTGCAGTCCTTGATTTTGATTTGTTGTGAGCAGTATTTGAAAAGGTTGCGAGTACTTGTACATTGCGCTATTGCACCATCCCACACATGTTGTGCAACATCTCCAAATATTGCTCGCGACAAATCAAATCAACAAGTAACAAAATTTTCAGCAGATTGGCTCTCATATGGAACAGCTACCTTTATTTTCTCCTGGTGGAAGGCAGGGTTGAGAATTCTCCGATGTTTTGCCCATTTCTCACCTTCATACGTTACAACTCCGCCAACTACGAACTTAGCAATACCCGCGGTCGTTTGCTTGGCGAAATTGCCAGACTTGTTGGACAAAATCTCCCTCGCTAAGTCAGGGTCTCTGATAATCACGAATGGCTTTGGGCCAGTCCAAACGAACGACAGTTTCCCTGCAATTGAGCTAAAGAGTCTGATGAGAAGGGAGACAATATATTCTACGTATCCTACTAAGGTGAATAACACAGGATATTTGAAGGGTCTATCCACTTTAATACTAAAATTAACCCTTTCAAAATTTGGCAATACCAAAATTTATCAAAATTTGATAGTGCCAAAATTCAGTAGAATGAAATATGTGAGTGTTGTCAGGTTTGCTATCATGTCAAAAAATTTTGGTTAGAACATATTATTTGCTCAACTCTTCGAAAATATGTTTTCTAAATTTTTTTTTCTTATTCTGCATCGCTTAGACCACTTATTTTGAATCTAAATATTCGATTTATCTCTATATCAAGTACTCCCTCCGTTTCACAATGTAAGTCATTCTAACATTTTCCACATTCATGTTGATATTAATGAATCTAGACATATATATCTATTTAGATTCATTAATATCAATATGAATGTGAGAAATGTTAGAATGAAACGGAGGAATTAGATAATCTGCCACAATAATCCACTGAATAATTTAAAAAGAACATGACCTTAAATCTGACACGTAAGCCACCTGTTAATAATGCACAAACGGAACTACCGTTTGACCCTTCATATCCGGGACAATCCCTCCCCGAGAAGAACGAATTGCGACGAGGCGACGAGCGATGCTAGTCGCTGGTTCAATACCAGAAGCGCGCGGCGTTTTTGACATCACAAAAGCCATGGGGAACATGGTGATCAGCTGGCAGTGGTGTGTTACCGTGCTCTTTCAGGACGTTGCAGAAGAAGGGCATGACGCGCGGGACGACGTCGTGCGAGCCGAGCGGCAGCGGCCTTGACGCGGCCTCTCTGTTGAGCCGGCCGTTCTCGGCCACGTCGCCGATGAAGAGGCGGTACCTGGTGCCCCGGAGGCCCTGCGCCCGCAGGGCCCGCTCCAGCCGCCGCGGCGTCCACCACGCCCACTGCAGCGTCCAGGCGCACAGCCACAGCAGCGCCACGGCCGCGCCCGCGCCGGCCAGGCTCCACGGTGAGGCGGCCTCTCCCAGCATCAGCGACGCGCCGGTGCAACTCTCCTTCGCCGTTGGCGGGCTCTCAGCCTCCGGTGGTGTCAGTGCAAGCCGAACAATCGGTGGTGTCGCAAGACCGCCCT
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| CDS seq | ATGCTGGGAGAGGCCGCCTCACCGTGGAGCCTGGCCGGCGCGGGCGCGGCCGTGGCGCTGCTGTGGCTGTGCGCCTGGACGCTGCAGTGGGCGTGGTGGACGCCGCGGCGGCTGGAGCGGGCCCTGCGGGCGCAGGGCCTCCGGGGCACCAGGTACCGCCTCTTCATCGGCGACGTGGCCGAGAACGGCCGGCTCAACAGAGAGGCCGCGTCAAGGCCGCTGCCGCTCGGCTCGCACGACGTCGTCCCGCGCGTCATGCCCTTCTTCTGCAACGTCCTGAAAGAGCACGGGAAACTGTCGTTCGTTTGGACTGGCCCAAAGCCATTCGTGATTATCAGAGACCCTGACTTAGCGAGGGAGATTTTGTCCAACAAGTCTGGCAATTTCGCCAAGCAAACGACCGCGGGTATTGCTAAGTTCGTAGTTGGCGGAGTTGTAACGTATGAAGGTGAGAAATGGGCAAAACATCGGAGAATTCTCAACCCTGCCTTCCACCAGGAGAAAATAAAGCGGATGCTGCCAGTGTTTTTAGCATGTTGCACCAAAATGATCACTAGATGGGTGAATTCAATGTCTTCAGAAGGAATATCTGAGTTAGACGTTTGGGATGAATTTCAAAATCTTACTGGAGATGTCATCTCAAGAACGGCATTTGGGAGCAGCTACCAGGAGGGGTGGAGAATTTTTCAGTTACAAGAAGAGCAAGCTAAACGCGTACTTAAAGCTTTTCAGAGAATCTTTATCCCAGGCTACTGGTACTTACCAATCGAAAACAACAGAAGGATCAGGGAAATTGATCAAGAAATCCGCACAATTCTGCGAGGAATAATAGTAAAAAGAGACAAGGCAGTTAGAAATGGTGAAGGTAGCAATGATGATTTGTTGGGATTATTGGTGGAATCGAATATGAGGCAATCAAATGAAAAAGAAGATGTGGGAATGAGTATAGAAGATATGATTGAGGAATGCAAGTTATTTTACGCTGCTGGTTCGGAGACAACATCAATGTTGCTCACTTGGACTTTAATTCTGCTAAGCATGCACCCTGAATGGCAAGAGCAGGCAAGAGAGGAAGTGATGCACCATTTTGGAAGAACCACACCAGATCATGATGGCTTGAGTCGTCTAAAGATTGTAACGATGATTCTCCACGAGGTTCTTAGGTTGTACCCACCGGTGGTATTCCTCCAAAGAACAACACACAAGGAAATAGAGCTTGGTGGCATCAAATACCCTGAAGGAGTGAACTTCACATTGCCTGTTCTATCCATTCACCACGATCCTAGCATCTGGGGACAAGATGCAATCAAATTCAACCCGGAAAGGTTCGCCAACGGAGTCTCCAAGGCAACGAAGTTTCAGACCGCGTTCTTTTCGTTTGCATGGGGTCCTCGGATCTGCCTTGGCCAGAGCTTTGCAATTCTGGAAGCCAAGATGGCGCTCGCCACCATCCTCCAGAGCTTCTCCTTCGAGCTCTCGCCGTCATACACCCACGCACCACACACCGTGCTAACTCTCCAACCACAGTACGGTTCTCCAATTAAATTGAAGAAGCTCTAG
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| Protein seq | MLGEAASPWSLAGAGAAVALLWLCAWTLQWAWWTPRRLERALRAQGLRGTRYRLFIGDVAENGRLNREAASRPLPLGSHDVVPRVMPFFCNVLKEHGKLSFVWTGPKPFVIIRDPDLAREILSNKSGNFAKQTTAGIAKFVVGGVVTYEGEKWAKHRRILNPAFHQEKIKRMLPVFLACCTKMITRWVNSMSSEGISELDVWDEFQNLTGDVISRTAFGSSYQEGWRIFQLQEEQAKRVLKAFQRIFIPGYWYLPIENNRRIREIDQEIRTILRGIIVKRDKAVRNGEGSNDDLLGLLVESNMRQSNEKEDVGMSIEDMIEECKLFYAAGSETTSMLLTWTLILLSMHPEWQEQAREEVMHHFGRTTPDHDGLSRLKIVTMILHEVLRLYPPVVFLQRTTHKEIELGGIKYPEGVNFTLPVLSIHHDPSIWGQDAIKFNPERFANGVSKATKFQTAFFSFAWGPRICLGQSFAILEAKMALATILQSFSFELSPSYTHAPHTVLTLQPQYGSPIKLKKL |
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| Function | Cytochrome P450 72A14 [UniProtKB/Swiss-Prot:Q9LUC6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g52790 | LOC_Os01g52790.1 | Chr01 | 30372204 | 30376917 | - | MSU_osa1r7 | ||
| CDS seq | ATGCTGGGAGAGGCCGCCTCACCGTGGAGCCTGGCCGGCGCGGGCGCGGCCGTGGCGCTGCTGTGGCTGTGCGCCTGGACGCTGCAGTGGGCGTGGTGGACGCCGCGGCGGCTGGAGCGGGCCCTGCGGGCGCAGGGCCTCCGGGGCACCAGGTACCGCCTCTTCATCGGCGACGTGGCCGAGAACGGCCGGCTCAACAGAGAGGCCGCGTCAAGGCCGCTGCCGCTCGGCTCGCACGACGTCGTCCCGCGCGTCATGCCCTTCTTCTGCAACGTCCTGAAAGAGCACGGGAAACTGTCGTTCGTTTGGACTGGCCCAAAGCCATTCGTGATTATCAGAGACCCTGACTTAGCGAGGGAGATTTTGTCCAACAAGTCTGGCAATTTCGCCAAGCAAACGACCGCGGGTATTGCTAAGTTCGTAGTTGGCGGAGTTGTAACGTATGAAGGTGAGAAATGGGCAAAACATCGGAGAATTCTCAACCCTGCCTTCCACCAGGAGAAAATAAAGCGGATGCTGCCAGTGTTTTTAGCATGTTGCACCAAAATGATCACTAGATGGGTGAATTCAATGTCTTCAGAAGGAATATCTGAGTTAGACGTTTGGGATGAATTTCAAAATCTTACTGGAGATGTCATCTCAAGAACGGCATTTGGGAGCAGCTACCAGGAGGGGTGGAGAATTTTTCAGTTACAAGAAGAGCAAGCTAAACGCGTACTTAAAGCTTTTCAGAGAATCTTTATCCCAGGCTACTGGTACTTACCAATCGAAAACAACAGAAGGATCAGGGAAATTGATCAAGAAATCCGCACAATTCTGCGAGGAATAATAGTAAAAAGAGACAAGGCAGTTAGAAATGGTGAAGGTAGCAATGATGATTTGTTGGGATTATTGGTGGAATCGAATATGAGGCAATCAAATGAAAAAGAAGATGTGGGAATGAGTATAGAAGATATGATTGAGGAATGCAAGTTATTTTACGCTGCTGGTTCGGAGACAACATCAATGTTGCTCACTTGGACTTTAATTCTGCTAAGCATGCACCCTGAATGGCAAGAGCAGGCAAGAGAGGAAGTGATGCACCATTTTGGAAGAACCACACCAGATCATGATGGCTTGAGTCGTCTAAAGATTGTAACGATGATTCTCCACGAGGTTCTTAGGTTGTACCCACCGGTGGTATTCCTCCAAAGAACAACACACAAGGAAATAGAGCTTGGTGGCATCAAATACCCTGAAGGAGTGAACTTCACATTGCCTGTTCTATCCATTCACCACGATCCTAGCATCTGGGGACAAGATGCAATCAAATTCAACCCGGAAAGGTTCGCCAACGGAGTCTCCAAGGCAACGAAGTTTCAGACCGCGTTCTTTTCGTTTGCATGGGGTCCTCGGATCTGCCTTGGCCAGAGCTTTGCAATTCTGGAAGCCAAGATGGCGCTCGCCACCATCCTCCAGAGCTTCTCCTTCGAGCTCTCGCCGTCATACACCCACGCACCACACACCGTGCTAACTCTCCAACCACAGTACGGTTCTCCAATTAAATTGAAGAAGCTCTAG
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| Protein seq | MLGEAASPWSLAGAGAAVALLWLCAWTLQWAWWTPRRLERALRAQGLRGTRYRLFIGDVAENGRLNREAASRPLPLGSHDVVPRVMPFFCNVLKEHGKLSFVWTGPKPFVIIRDPDLAREILSNKSGNFAKQTTAGIAKFVVGGVVTYEGEKWAKHRRILNPAFHQEKIKRMLPVFLACCTKMITRWVNSMSSEGISELDVWDEFQNLTGDVISRTAFGSSYQEGWRIFQLQEEQAKRVLKAFQRIFIPGYWYLPIENNRRIREIDQEIRTILRGIIVKRDKAVRNGEGSNDDLLGLLVESNMRQSNEKEDVGMSIEDMIEECKLFYAAGSETTSMLLTWTLILLSMHPEWQEQAREEVMHHFGRTTPDHDGLSRLKIVTMILHEVLRLYPPVVFLQRTTHKEIELGGIKYPEGVNFTLPVLSIHHDPSIWGQDAIKFNPERFANGVSKATKFQTAFFSFAWGPRICLGQSFAILEAKMALATILQSFSFELSPSYTHAPHTVLTLQPQYGSPIKLKKL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.298887 | 2.509248 | 0.146153 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0728300 | RBH | 3.310023 | 3.396738 | 0.569116 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0728300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0032340 | SBH | 0.000000 | 0.0 | 1.652570 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0031840 | SBH | 0.046196 | 0.643570 | 0.213658 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0032310 | RBH | 0.000000 | 0.0 | 0.333570 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0031560 | RBH | 0.085354 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0031240 | RBH | 1.879417 | 2.060481 | 10.876412 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0504600 | RBH | 1.3688155 | 4.4098745 | 1.0931405 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0030970 | RBH | 0.0 | 0.156096 | 0.735727 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0496600 | RBH | 1.789241 | 6.9859255 | 0.391256 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0031210 | RBH | 0.538801 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0031260 | RBH | 0.375850 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0031440 | RBH | 0.799170 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0031610 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0031390 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G031840 | RBH | 0.318687 | 0.0 | 1.272716 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0031490 | RBH | 0.503227 | 4.410191 | 4.925917 |
