Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
LOC_Os01g50640 OGI:01090000 | 3/16 Nipponbare | IRGSP 1.0 | MSU Chr01:29084957-29090885
Gene Symbol -
DNA seq

ATGGCCGAACGGGCAGTGGCGCACAATCTCTCTCCGAGCGCTAGCGGTGAAGACGGGGAGCAGAACCCGCGCCGTCGAGCTCGTACTCCACTGTCCCCCTCTCGCCGAAGTCTTGGGCGGGAGGAGGCGCTCGAGGAGGTCGAAAGATCCGCGACTTCGCCGCACGCGGGCGATGGAGAAGGACGGCGAGACGGGGAGCGTCGTCTCCTCGTCTACGGTGATGGCAGCACGCCCCAGGGCGCGCTCCAGGCTGCGGGCGCGCTCCTGCGTCACCCGCCCGTCATCCCTGATCCAGAGACTCCAACCCGACGTTGGCTAGATGACGTGGCCAATTTGGTCATGACGGCGCAGCAGCGCCTAGGCGCCGGCTGGTGGTCCTCCGCCACCAAGGCCACTGGCGTTGCTACTGCTGGCTCCGTGTCGTCGAGGCGGAGGGCGCGGCGAGCGGCGGCCGCTACCCGCCGTTCGTCCGCCATTCCCTCGTCAACGCCTCCAACCCAAGAAGATGTGCGTAGGGGGCCAGATGCCCGCTTCAATATCGAGCGCCGGTGCAATGATCGCCGTGCTGCCCACGCATCGGAGGGCGCTTCCTCGTCCGGAGCGCCACTTCGGTCCGGGCACGGGGGCCAGCCCCCTGTGTCCCCAGTTGGCGGTGCCGGCTGTCGAGCCTTTGTGGCGAGCCTTCGGAACGTCCGTTGGCCCCCAAGGTTCCGGCCCACCATCACCGAAAAATACGACGGAAGCATCAACCCCTCCGAGTTTCTCCAGATCTACACGACTGGGATCGAGGCCACCGGGGGTGACGACAGGGTCATGGCGAATTTCTTCCCCATGGCCCTGAAAGGACAGGCGCGGGGTTGGCTAATGAACTTGCCACCCGCGTCGGTCCACTCTTGGGAGGATTTGTGCCAGCAGTTCACTATGAACTTCCAGGGCACATATCCGCGCCCAGGTGAAGAAGCGGACTTGCACGCGGTACAGCGAGGGGACGATGAGTCTCTTCGCTCATACATTCAGCGGTTTTGTCAAGTCCGCAACACCATACCGTGCATCCCTGCACACGCGGTGATCTACGCGTTCAGGGGGGGCGTGCGCCACAACCGCATGCTCGAGAAGATCGCCTCCAAGGAGCCCCAGACCACCGCGGAGCTTTTTCAGCTCGCGGACCGTGTGGCTCGCAAGGAGGAGGCCTGGACCTGGAACTCCTCCGGTTCCGGTGTGGCAGCTTCGGCCGCCCCCGGATCCGCCGCTCGGTCAGGGCGACGGGACAGGAGGAGGAAGAAGAGGTCGGCCCATTCCGACGACGAGGGTCACGTCCTCGCCGTCGAGGGCGCTTTGCGGGCCACCCGAAAGGGGAGGCCTGCGAGCGACAAAAAGAAGGAGGCCGGCGCTCCCAGCAGGGAGCGCCCGACCAGCAAGTGGTGCACCGTGCACAACACCTCCCTCCACGACCTCGCGGACTGCCGCGCGGTCAAAAGTTTGGCTGAGCGGACGAGGAAGTGGGAGGAGGAGAGGAGGCAGGAGCGCCGTGAGGGCAATACCCCGGCGGCTCCCGCCGGCAACCGGCGAGGTGAGGCCAAGCAGAAGGCCCCCGCCGAGGACATCAACGATGGCGACGATGACCTAGGGTTCCAGGAGCCTGAGGCCACTGTCGCCACCGTTGATGGGGGAGCGTGTGCTCACGCTTCTCGCCGGAGCCTCAAGGCCATGAAGCGAGAGCTTCTGGCCGTGGCCCCTACCCATGAGGCGACGCGGCGGGCGCGGTGGTCGGAGGTTGCCCTCACCTTCGACCAGACCGACCACCCACCGTGCGTTGCCCGGGGAGGACAGATCGCGATGGTGGTTTCCCCCACCGTTTGCAATGTGAAGTTGGGGCGTGTCCTCGTTGACGGGGGTGCAGCCCTCAACATCCTTTCCCCCGCTGCCTTTGACGCCATCAAGGCCCCGGGGATGGTGCTCCGGTCGTCCCAGCCAATCATCGGTGTGACGCCGGGGCACACTTGGCCGCTAGGCCATATCGACCTCCCGGTCACCTTCGGTGGTTCCGCCAACTTCCGCACGGAGCGGGTGAACTTCGATGTGGCGGACCTCAGTCTGCCCTACAACGCGGTCCTGGGGAGGCCCGCGTTGGTGAAGTTCATGGTGGCGGTCCACTACGCATATCTCCAGATGAAGATGCCGGGCCCCGGTGGCCCCATCACCGTCCATGGCGACCTCAAAGTCGCGCTTGCTTGCATGGAGCAGCGCGCGGACCACCTCGCCGTGGCATCCAAGCCCGCGGGTGGCGACGAGAGGCTCAGCACCTCCGTCCCAGCCGCCCCGAGGCAGCGGATGATCACGTGCGACGAGGTCCCGATCAAGCAGGTTGCCCTGGGCGACGGCCCGTCCAAGACCACACGAATCGGTGGTCTTCTGGACGACAAATAGGAAGACGCGCTCGTCTCCTTCCTGCGGGCAAACGCCGACGTCTTCGCCTGGAGACCAGCGGACATGCCCGGGGTCCCCAGGGAGGTGATTGAGCACCGTCTCACCGTACGGCCGGGCGCAAGGCCGGTCCGGCAGAAAGTGCGGCGGCAGGCCCCGGAACGTCAAGCCTTCATCCGCGAGGAGGTGGCGCGACTTCTGGAGGCCGGATTCATCCGAGAGGTCATCCATCCGAAGTGGCTGGCGAACCCGGTCGTCGTTCCCAAGGCGAACGGCAAGCTTCGGATGTGCATCGACTACACCGACCTTAACAAGGCATGTCCTAAGGACCCTTACCCCCTGCCACGCATAAATCAGATTGTCGACTCCACCGCGGGGTGCGACCTTTTGTGTTTTCTAGATGCATACTCTGGTTATCATCAGATTCGCATGGCTAGGGAGGATGAGGAAAAAACTGCATTCATTACCCCCATAGGAACTTATTGTTATACGACAATGCATTTTGGGTTAAAGAATGCAGGTCCTACTTTTCAACGTACTACTCGAATTTCTTTGGGTAGCCAAATAGGACGTAATGTTGAGGCCTATGTTGATGACTTGGTTGTGAAAACACGCAACCAGGAGACCTTACTCGGATCTAGCGGAAACTTTCGAAAGTCTCCGCACCGCCCGCATAAAGCTGAACCCCGACAAGTGCGTGTTCGGCGTGCCTGCGGGCAAGCTTCTCGGGTTCTTGATCTCTGCCCGAGGCATTGAGGCCAACCCCGAGAAGATACGAGCTATAGAGCGGATGCGCCCCCCCAGCAAGCTTAGGGATGTGCAATGCGTCACTGGCTGTATGGCCGCCCTAAGTCGGTTCATATCGAGGCTGGGAGAGAAGGCGCTACCCCTATTTAAGCTCCTCAAACGCTCCGGGCCGTTTATCTGGACGGAGGAGGCTGAACGGGCCCTCACTCAGTTGAAGGCGTACCTCAGTTCTCCCCCAGTCCTGGTCGCCCCGGAGCCAGATGAGCCGTTGCTACTCTACCTGGCGGCAACTCCGCAGGTGGTCAGCGCGGCGTTGGTCATGGAGCGCGACGAGGACGACCCTCGCTCCGCGCATCCCCACCCTGTGTCGACTCGACCCGGGAGAGAGCAGGGAGGAGAGGCCCCCGAGCCGAACGGCGGCCCGAGGCCCCCGACGACCGGAGCTGGCCCTCTGCCCGCTTGTCCGACGGTGCCAGGCGCCCCCGACCCCCAGGATGGCCCCGGGGCCACTGCGGGAAGGCCGCGCCTGTCGCCTTCCGACCCCGAGGTCGTCGACACAGAAGCCGAGTGCGCCCCGCGCGGCCTCTCGGACGAAAAGCGCCCTATAGATGCGGCCCCTGGCGAAGAGGATCGGCCCCGACAAAAGGTGCAGCGGCCCGTCTACTTTGTTAGTGAGGCCTTCCGGGACGCCAAGACCCGATACCCTCAGGCCCAGAAGATGCTTTACGCTATTCTGATGGCTTCGAGGAAGTTGCGCCATTATTTCCAGGCGCATCGGGTCACGGTGGTTACGTCCTACCCCCTCGGCCAAATCTTGCATAACCGAGAGGGTACTGGACGGGTGGTGAAATGGGCAATCGAACTCTCTGAGTTCGATTTGCACTTTGAACCACGCCACGCGATCAAGAGCCAGGCCCTCGCCGACTTTGTGGCAGAGTGGACACCGGCTCCCGAGCCCGTCTCCATCCCCGAGGCCAGCTCGGGCCCTTCGCAGCTGCCTCACACCGCCTATTGGGTGATGCAGTTCGACGGCTCCCTGTCTCTTCAGGGCGCCGGTGCGGGGGTCACGTTGACCTCGCCGAGCGGAGATGTCCTCAAATACCTGGTCCGCCTTGACTTTCGGGCAACCAACAATATGGCAGAGTACGAGGGACTCCTTGCGGGACTCAGAGTGGCGGCTGGACTGGGGATCCGCCGCCTCCTGGTGTGAGGTGACTCTCAGTTGGTTGTTAACCAGGTCTCCAAGGAGTACCAGTGCTCTGACCCGCAGATGGATGCTTACGTGCGCCAGGTGCGGCGTATGGAGCGCCATTTTGACGGGATAGAGCTTCGGCACGTGCCCAGACGGGATAACGCGGTCGCCGACGAACTCTCAAGGCTCGCTTCCTCGCGAGCCCAGACCCCACCGGGCGCCTTTGAAGAAAGGCTTGCCCAGCCGTCGGCGCGACCCGACCCCCTAGGGGAGACGGACGAGCCTGAACGGCCCCCGAGGCCCGTCGGAGTCCAGGCCTCGGGACCCGAGGGGGGCGCTCCCAGCTCCCTTAGATTGATTGCTTGGATCGCTGAGATCCAGGCGTACCTCGCAGATAAGACTCTACCCGAGGACCGCGAAGGGAGTGAACGCGTCCAGCGCATCTCCAAGCGCTACGTGCTGGTGGAAGGGACCCTCTATCGGCACGCGGCTAACGGAGTCCTCCTGAAGTGCATTCCTCGGGAACAAGGCGTCGAGCTTCTTGCCGATATCCATGAAGGCGAGTGCGGAGCCCACTCTGCCTCACGCACCTTGGTTGGCAAGGCCTTTCGCCAGGGTTTCTATTGGCCGACGGCTCTCAACGATGCGATCGACCTGGTCTGGCGGTGCAGGGCGTGCCAGTTCCATGCCAAGCAAACCCATCAGCCGGCCCAGGCCCTGCAGACCATACCTCTTTCATGGCCGTTTGCTGTCTGGGGGCTCGATATCCTGGGTCCGTTTAGACGGGCCCCGGGCGGGTTCGAGTATCTGTATGTCGCTTTCGACAAGTTCACTAAGTGGCCCGAGGCTTATCCGGTCATCAAGATCGATAAGCACTCCGCACTTAAATTCATCAGGGGTATCACTGCTCGGTTTGGGGTGCCTAACCGTATCATTACGGATAACGGCACCCAGTTCACTAGTGAGCTCTTCGGTGACTACTGCGAAGACATGGGCATTAAGCTCTGCTTCGCCTCTCCCGCCCACCCTAGAAGCAATGGCCAAGTGGAGCGCGCCAACGCAGAAATCCTCAAGGGCCTCAAAACCAAGACCTTCAACATCCTCAAGAAGCATGGCGACTCGTGGATCGAGGAGCTGCCAGCGGTGCTCTGGGCGAACCGAACCACGCCAAGCCGAGCAACCGGGGAAACGCCTTTCTTCCTCGTCTACGGCGCGGAGGCGGTTCTCCCATCCGAGCTCACCCTGAGGTCCCCTCGGGCCACCATGTACTGCGAGGCTGATCAAGATCAGCATCGCAGAGATGACCTCGACTTCTTGGAAGAACGAAGGCGGCGCGCGGCCCTTCGAGCCGCGCGCTACCAGCAGAGCCTGCGGCGCTACCATCAGCGTCACGTCCGGGCCCGATCACTCTGCGTCGACGACCTCGTCCTACGCCGCGTCCAAACGCGTGCTGGACTGAGCAAGCTCTCACCAATGTGGGAGGGTCCGTATCGAGTGATCGGCGTCCCCCGGCCGGGCTCCGTTCGGCTGGCCACGGGCGACGGCACAGAGCTGCCTAACCCATAG

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CDS seq

ATGGCCGAACGGGCAGTGGCGCACAATCTCTCTCCGAGCGCTAGCGGTGAAGACGGGGAGCAGAACCCGCGCCGTCGAGCTCGTACTCCACTGTCCCCCTCTCGCCGAAGTCTTGGGCGGGAGGAGGCGCTCGAGGAGGTCGAAAGATCCGCGACTTCGCCGCACGCGGGCGATGGAGAAGGACGGCGAGACGGGGAGCGTCGTCTCCTCGTCTACGGTGATGGCAGCACGCCCCAGGGCGCGCTCCAGGCTGCGGGCGCGCTCCTGCGTCACCCGCCCGTCATCCCTGATCCAGAGACTCCAACCCGACGTTGGCTAGATGACGTGGCCAATTTGGTCATGACGGCGCAGCAGCGCCTAGGCGCCGGCTGGTGGTCCTCCGCCACCAAGGCCACTGGCGTTGCTACTGCTGGCTCCGTGTCGTCGAGGCGGAGGGCGCGGCGAGCGGCGGCCGCTACCCGCCGTTCGTCCGCCATTCCCTCGTCAACGCCTCCAACCCAAGAAGATGTGCGTAGGGGGCCAGATGCCCGCTTCAATATCGAGCGCCGGTGCAATGATCGCCGTGCTGCCCACGCATCGGAGGGCGCTTCCTCGTCCGGAGCGCCACTTCGGTCCGGGCACGGGGGCCAGCCCCCTGTGTCCCCAGTTGGCGGTGCCGGCTGTCGAGCCTTTGTGGCGAGCCTTCGGAACGTCCGTTGGCCCCCAAGGTTCCGGCCCACCATCACCGAAAAATACGACGGAAGCATCAACCCCTCCGAGTTTCTCCAGATCTACACGACTGGGATCGAGGCCACCGGGGGTGACGACAGGGTCATGGCGAATTTCTTCCCCATGGCCCTGAAAGGACAGGCGCGGGGTTGGCTAATGAACTTGCCACCCGCGTCGGTCCACTCTTGGGAGGATTTGTGCCAGCAGTTCACTATGAACTTCCAGGGCACATATCCGCGCCCAGGTGAAGAAGCGGACTTGCACGCGGTACAGCGAGGGGACGATGAGTCTCTTCGCTCATACATTCAGCGGTTTTGTCAAGTCCGCAACACCATACCGTGCATCCCTGCACACGCGGTGATCTACGCGTTCAGGGGGGGCGTGCGCCACAACCGCATGCTCGAGAAGATCGCCTCCAAGGAGCCCCAGACCACCGCGGAGCTTTTTCAGCTCGCGGACCGTGTGGCTCGCAAGGAGGAGGCCTGGACCTGGAACTCCTCCGGTTCCGGTGTGGCAGCTTCGGCCGCCCCCGGATCCGCCGCTCGGTCAGGGCGACGGGACAGGAGGAGGAAGAAGAGGTCGGCCCATTCCGACGACGAGGGTCACGTCCTCGCCGTCGAGGGCGCTTTGCGGGCCACCCGAAAGGGGAGGCCTGCGAGCGACAAAAAGAAGGAGGCCGGCGCTCCCAGCAGGGAGCGCCCGACCAGCAAGTGGTGCACCGTGCACAACACCTCCCTCCACGACCTCGCGGACTGCCGCGCGGTCAAAAGTTTGGCTGAGCGGACGAGGAAGTGGGAGGAGGAGAGGAGGCAGGAGCGCCGTGAGGGCAATACCCCGGCGGCTCCCGCCGGCAACCGGCGAGGTGAGGCCAAGCAGAAGGCCCCCGCCGAGGACATCAACGATGGCGACGATGACCTAGGGTTCCAGGAGCCTGAGGCCACTGTCGCCACCGTTGATGGGGGAGCGTGTGCTCACGCTTCTCGCCGGAGCCTCAAGGCCATGAAGCGAGAGCTTCTGGCCGTGGCCCCTACCCATGAGGCGACGCGGCGGGCGCGGTGGTCGGAGGTTGCCCTCACCTTCGACCAGACCGACCACCCACCGTGCGTTGCCCGGGGAGGACAGATCGCGATGGTGGTTTCCCCCACCGTTTGCAATGTGAAGTTGGGGCGTGTCCTCGTTGACGGGGGTGCAGCCCTCAACATCCTTTCCCCCGCTGCCTTTGACGCCATCAAGGCCCCGGGGATGGTGCTCCGGTCGTCCCAGCCAATCATCGGTGTGACGCCGGGGCACACTTGGCCGCTAGGCCATATCGACCTCCCGGTCACCTTCGGTGGTTCCGCCAACTTCCGCACGGAGCGGGTGAACTTCGATGTGGCGGACCTCAGTCTGCCCTACAACGCGGTCCTGGGGAGGCCCGCGTTGGTGAAGTTCATGGTGGCGGTCCACTACGCATATCTCCAGATGAAGATGCCGGGCCCCGGTGGCCCCATCACCGTCCATGGCGACCTCAAAGTCGCGCTTGCTTGCATGGAGCAGCGCGCGGACCACCTCGCCGTGGCATCCAAGCCCGCGGGTGGCGACGAGAGGCTCAGCACCTCCGTCCCAGCCGCCCCGAGGCAGCGGATGATCACGTGCGACGAGGTCCCGATCAAGCAGGAAGACGCGCTCGTCTCCTTCCTGCGGGCAAACGCCGACGTCTTCGCCTGGAGACCAGCGGACATGCCCGGGGTCCCCAGGGAGGTGATTGAGCACCGTCTCACCGTACGGCCGGGCGCAAGGCCGGTCCGGCAGAAAGTGCGGCGGCAGGCCCCGGAACGTCAAGCCTTCATCCGCGAGGAGGTGGCGCGACTTCTGGAGGCCGGATTCATCCGAGAGGTCATCCATCCGAAGTGGCTGGCGAACCCGGTCGTCGTTCCCAAGGCGAACGGCAAGCTTCGGATGTGCATCGACTACACCGACCTTAACAAGGCATGTCCTAAGGACCCTTACCCCCTGCCACGCATAAATCAGATTGTCGACTCCACCGCGGGGAGACCTTACTCGGATCTAGCGGAAACTTTCGAAAGTCTCCGCACCGCCCGCATAAAGCTGAACCCCGACAAGTGCGTGTTCGGCGTGCCTGCGGGCAAGCTTCTCGGGTTCTTGATCTCTGCCCGAGGCATTGAGGCCAACCCCGAGAAGATACGAGCTATAGAGCGGATGCGCCCCCCCAGCAAGCTTAGGGATGTGCAATGCGTCACTGGCTGTATGGCCGCCCTAAGTCGGTTCATATCGAGGCTGGGAGAGAAGGCGCTACCCCTATTTAAGCTCCTCAAACGCTCCGGGCCGTTTATCTGGACGGAGGAGGCTGAACGGGCCCTCACTCAGTTGAAGGCGTACCTCAGTTCTCCCCCAGTCCTGGTCGCCCCGGAGCCAGATGAGCCGTTGCTACTCTACCTGGCGGCAACTCCGCAGGTGGTCAGCGCGGCGTTGGTCATGGAGCGCGACGAGGACGACCCTCGCTCCGCGCATCCCCACCCTGTGTCGACTCGACCCGGGAGAGAGCAGGGAGGAGAGGCCCCCGAGCCGAACGGCGGCCCGAGGCCCCCGACGACCGGAGCTGGCCCTCTGCCCGCTTGTCCGACGGTGCCAGGCGCCCCCGACCCCCAGGATGGCCCCGGGGCCACTGCGGGAAGGCCGCGCCTGTCGCCTTCCGACCCCGAGGTCGTCGACACAGAAGCCGAGTGCGCCCCGCGCGGCCTCTCGGACGAAAAGCGCCCTATAGATGCGGCCCCTGGCGAAGAGGATCGGCCCCGACAAAAGGTGCAGCGGCCCGTCTACTTTGTTAGTGAGGCCTTCCGGGACGCCAAGACCCGATACCCTCAGGCCCAGAAGATGCTTTACGCTATTCTGATGGCTTCGAGGAAGTTGCGCCATTATTTCCAGGCGCATCGGGTCACGGTGGTTACGTCCTACCCCCTCGGCCAAATCTTGCATAACCGAGAGGGTACTGGACGGGTGGTGAAATGGGCAATCGAACTCTCTGAGTTCGATTTGCACTTTGAACCACGCCACGCGATCAAGAGCCAGGCCCTCGCCGACTTTGTGGCAGAGTGGACACCGGCTCCCGAGCCCGTCTCCATCCCCGAGGCCAGCTCGGGCCCTTCGCAGCTGCCTCACACCGCCTATTGGGTGATGCAGTTCGACGGCTCCCTGTCTCTTCAGGGCGCCGGTGCGGGGGTCACGTTGACCTCGCCGAGCGGAGATGTCCTCAAATACCTGGTCCGCCTTGACTTTCGGGCAACCAACAATATGGCAGAGTACGAGGGACTCCTTGCGGGACTCAGAGTGGCGGCTGGACTGGGGATCCGCCGCCTCCTGGTCTCCAAGGAGTACCAGTGCTCTGACCCGCAGATGGATGCTTACGTGCGCCAGGTGCGGCGTATGGAGCGCCATTTTGACGGGATAGAGCTTCGGCACGTGCCCAGACGGGATAACGCGGTCGCCGACGAACTCTCAAGGCTCGCTTCCTCGCGAGCCCAGACCCCACCGGGCGCCTTTGAAGAAAGGCTTGCCCAGCCGTCGGCGCGACCCGACCCCCTAGGGGAGACGGACGAGCCTGAACGGCCCCCGAGGCCCGTCGGAGTCCAGGCCTCGGGACCCGAGGGGGGCGCTCCCAGCTCCCTTAGATTGATTGCTTGGATCGCTGAGATCCAGGCGTACCTCGCAGATAAGACTCTACCCGAGGACCGCGAAGGGAGTGAACGCGTCCAGCGCATCTCCAAGCGCTACGTGCTGGTGGAAGGGACCCTCTATCGGCACGCGGCTAACGGAGTCCTCCTGAAGTGCATTCCTCGGGAACAAGGCGTCGAGCTTCTTGCCGATATCCATGAAGGCGAGTGCGGAGCCCACTCTGCCTCACGCACCTTGGTTGGCAAGGCCTTTCGCCAGGGTTTCTATTGGCCGACGGCTCTCAACGATGCGATCGACCTGGTCTGGCGGTGCAGGGCGTGCCAGTTCCATGCCAAGCAAACCCATCAGCCGGCCCAGGCCCTGCAGACCATACCTCTTTCATGGCCGTTTGCTGTCTGGGGGCTCGATATCCTGGGTCCGTTTAGACGGGCCCCGGGCGGGTTCGAGTATCTGTATGTCGCTTTCGACAAGTTCACTAAGTGGCCCGAGGCTTATCCGGTCATCAAGATCGATAAGCACTCCGCACTTAAATTCATCAGGGGTATCACTGCTCGGTTTGGGGTGCCTAACCGTATCATTACGGATAACGGCACCCAGTTCACTAGTGAGCTCTTCGGTGACTACTGCGAAGACATGGGCATTAAGCTCTGCTTCGCCTCTCCCGCCCACCCTAGAAGCAATGGCCAAGTGGAGCGCGCCAACGCAGAAATCCTCAAGGGCCTCAAAACCAAGACCTTCAACATCCTCAAGAAGCATGGCGACTCGTGGATCGAGGAGCTGCCAGCGGTGCTCTGGGCGAACCGAACCACGCCAAGCCGAGCAACCGGGGAAACGCCTTTCTTCCTCGTCTACGGCGCGGAGGCGGTTCTCCCATCCGAGCTCACCCTGAGGTCCCCTCGGGCCACCATGTACTGCGAGGCTGATCAAGATCAGCATCGCAGAGATGACCTCGACTTCTTGGAAGAACGAAGGCGGCGCGCGGCCCTTCGAGCCGCGCGCTACCAGCAGAGCCTGCGGCGCTACCATCAGCGTCACGTCCGGGCCCGATCACTCTGCGTCGACGACCTCGTCCTACGCCGCGTCCAAACGCGTGCTGGACTGAGCAAGCTCTCACCAATGTGGGAGGGTCCGTATCGAGTGATCGGCGTCCCCCGGCCGGGCTCCGTTCGGCTGGCCACGGGCGACGGCACAGAGCTGCCTAACCCATAG

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Protein seq

MAERAVAHNLSPSASGEDGEQNPRRRARTPLSPSRRSLGREEALEEVERSATSPHAGDGEGRRDGERRLLVYGDGSTPQGALQAAGALLRHPPVIPDPETPTRRWLDDVANLVMTAQQRLGAGWWSSATKATGVATAGSVSSRRRARRAAAATRRSSAIPSSTPPTQEDVRRGPDARFNIERRCNDRRAAHASEGASSSGAPLRSGHGGQPPVSPVGGAGCRAFVASLRNVRWPPRFRPTITEKYDGSINPSEFLQIYTTGIEATGGDDRVMANFFPMALKGQARGWLMNLPPASVHSWEDLCQQFTMNFQGTYPRPGEEADLHAVQRGDDESLRSYIQRFCQVRNTIPCIPAHAVIYAFRGGVRHNRMLEKIASKEPQTTAELFQLADRVARKEEAWTWNSSGSGVAASAAPGSAARSGRRDRRRKKRSAHSDDEGHVLAVEGALRATRKGRPASDKKKEAGAPSRERPTSKWCTVHNTSLHDLADCRAVKSLAERTRKWEEERRQERREGNTPAAPAGNRRGEAKQKAPAEDINDGDDDLGFQEPEATVATVDGGACAHASRRSLKAMKRELLAVAPTHEATRRARWSEVALTFDQTDHPPCVARGGQIAMVVSPTVCNVKLGRVLVDGGAALNILSPAAFDAIKAPGMVLRSSQPIIGVTPGHTWPLGHIDLPVTFGGSANFRTERVNFDVADLSLPYNAVLGRPALVKFMVAVHYAYLQMKMPGPGGPITVHGDLKVALACMEQRADHLAVASKPAGGDERLSTSVPAAPRQRMITCDEVPIKQEDALVSFLRANADVFAWRPADMPGVPREVIEHRLTVRPGARPVRQKVRRQAPERQAFIREEVARLLEAGFIREVIHPKWLANPVVVPKANGKLRMCIDYTDLNKACPKDPYPLPRINQIVDSTAGRPYSDLAETFESLRTARIKLNPDKCVFGVPAGKLLGFLISARGIEANPEKIRAIERMRPPSKLRDVQCVTGCMAALSRFISRLGEKALPLFKLLKRSGPFIWTEEAERALTQLKAYLSSPPVLVAPEPDEPLLLYLAATPQVVSAALVMERDEDDPRSAHPHPVSTRPGREQGGEAPEPNGGPRPPTTGAGPLPACPTVPGAPDPQDGPGATAGRPRLSPSDPEVVDTEAECAPRGLSDEKRPIDAAPGEEDRPRQKVQRPVYFVSEAFRDAKTRYPQAQKMLYAILMASRKLRHYFQAHRVTVVTSYPLGQILHNREGTGRVVKWAIELSEFDLHFEPRHAIKSQALADFVAEWTPAPEPVSIPEASSGPSQLPHTAYWVMQFDGSLSLQGAGAGVTLTSPSGDVLKYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLVSKEYQCSDPQMDAYVRQVRRMERHFDGIELRHVPRRDNAVADELSRLASSRAQTPPGAFEERLAQPSARPDPLGETDEPERPPRPVGVQASGPEGGAPSSLRLIAWIAEIQAYLADKTLPEDREGSERVQRISKRYVLVEGTLYRHAANGVLLKCIPREQGVELLADIHEGECGAHSASRTLVGKAFRQGFYWPTALNDAIDLVWRCRACQFHAKQTHQPAQALQTIPLSWPFAVWGLDILGPFRRAPGGFEYLYVAFDKFTKWPEAYPVIKIDKHSALKFIRGITARFGVPNRIITDNGTQFTSELFGDYCEDMGIKLCFASPAHPRSNGQVERANAEILKGLKTKTFNILKKHGDSWIEELPAVLWANRTTPSRATGETPFFLVYGAEAVLPSELTLRSPRATMYCEADQDQHRRDDLDFLEERRRRAALRAARYQQSLRRYHQRHVRARSLCVDDLVLRRVQTRAGLSKLSPMWEGPYRVIGVPRPGSVRLATGDGTELPNP

Function Gag-Pol polyprotein (Fragment) [UniProtKB/Swiss-Prot:P03360]

Transcripts

Gene Transcript Chromosome Start End Strand Source
LOC_Os01g50640 LOC_Os01g50640.1 Chr01 29084957 29090885 + MSU_osa1r7
CDS seq

ATGGCCGAACGGGCAGTGGCGCACAATCTCTCTCCGAGCGCTAGCGGTGAAGACGGGGAGCAGAACCCGCGCCGTCGAGCTCGTACTCCACTGTCCCCCTCTCGCCGAAGTCTTGGGCGGGAGGAGGCGCTCGAGGAGGTCGAAAGATCCGCGACTTCGCCGCACGCGGGCGATGGAGAAGGACGGCGAGACGGGGAGCGTCGTCTCCTCGTCTACGGTGATGGCAGCACGCCCCAGGGCGCGCTCCAGGCTGCGGGCGCGCTCCTGCGTCACCCGCCCGTCATCCCTGATCCAGAGACTCCAACCCGACGTTGGCTAGATGACGTGGCCAATTTGGTCATGACGGCGCAGCAGCGCCTAGGCGCCGGCTGGTGGTCCTCCGCCACCAAGGCCACTGGCGTTGCTACTGCTGGCTCCGTGTCGTCGAGGCGGAGGGCGCGGCGAGCGGCGGCCGCTACCCGCCGTTCGTCCGCCATTCCCTCGTCAACGCCTCCAACCCAAGAAGATGTGCGTAGGGGGCCAGATGCCCGCTTCAATATCGAGCGCCGGTGCAATGATCGCCGTGCTGCCCACGCATCGGAGGGCGCTTCCTCGTCCGGAGCGCCACTTCGGTCCGGGCACGGGGGCCAGCCCCCTGTGTCCCCAGTTGGCGGTGCCGGCTGTCGAGCCTTTGTGGCGAGCCTTCGGAACGTCCGTTGGCCCCCAAGGTTCCGGCCCACCATCACCGAAAAATACGACGGAAGCATCAACCCCTCCGAGTTTCTCCAGATCTACACGACTGGGATCGAGGCCACCGGGGGTGACGACAGGGTCATGGCGAATTTCTTCCCCATGGCCCTGAAAGGACAGGCGCGGGGTTGGCTAATGAACTTGCCACCCGCGTCGGTCCACTCTTGGGAGGATTTGTGCCAGCAGTTCACTATGAACTTCCAGGGCACATATCCGCGCCCAGGTGAAGAAGCGGACTTGCACGCGGTACAGCGAGGGGACGATGAGTCTCTTCGCTCATACATTCAGCGGTTTTGTCAAGTCCGCAACACCATACCGTGCATCCCTGCACACGCGGTGATCTACGCGTTCAGGGGGGGCGTGCGCCACAACCGCATGCTCGAGAAGATCGCCTCCAAGGAGCCCCAGACCACCGCGGAGCTTTTTCAGCTCGCGGACCGTGTGGCTCGCAAGGAGGAGGCCTGGACCTGGAACTCCTCCGGTTCCGGTGTGGCAGCTTCGGCCGCCCCCGGATCCGCCGCTCGGTCAGGGCGACGGGACAGGAGGAGGAAGAAGAGGTCGGCCCATTCCGACGACGAGGGTCACGTCCTCGCCGTCGAGGGCGCTTTGCGGGCCACCCGAAAGGGGAGGCCTGCGAGCGACAAAAAGAAGGAGGCCGGCGCTCCCAGCAGGGAGCGCCCGACCAGCAAGTGGTGCACCGTGCACAACACCTCCCTCCACGACCTCGCGGACTGCCGCGCGGTCAAAAGTTTGGCTGAGCGGACGAGGAAGTGGGAGGAGGAGAGGAGGCAGGAGCGCCGTGAGGGCAATACCCCGGCGGCTCCCGCCGGCAACCGGCGAGGTGAGGCCAAGCAGAAGGCCCCCGCCGAGGACATCAACGATGGCGACGATGACCTAGGGTTCCAGGAGCCTGAGGCCACTGTCGCCACCGTTGATGGGGGAGCGTGTGCTCACGCTTCTCGCCGGAGCCTCAAGGCCATGAAGCGAGAGCTTCTGGCCGTGGCCCCTACCCATGAGGCGACGCGGCGGGCGCGGTGGTCGGAGGTTGCCCTCACCTTCGACCAGACCGACCACCCACCGTGCGTTGCCCGGGGAGGACAGATCGCGATGGTGGTTTCCCCCACCGTTTGCAATGTGAAGTTGGGGCGTGTCCTCGTTGACGGGGGTGCAGCCCTCAACATCCTTTCCCCCGCTGCCTTTGACGCCATCAAGGCCCCGGGGATGGTGCTCCGGTCGTCCCAGCCAATCATCGGTGTGACGCCGGGGCACACTTGGCCGCTAGGCCATATCGACCTCCCGGTCACCTTCGGTGGTTCCGCCAACTTCCGCACGGAGCGGGTGAACTTCGATGTGGCGGACCTCAGTCTGCCCTACAACGCGGTCCTGGGGAGGCCCGCGTTGGTGAAGTTCATGGTGGCGGTCCACTACGCATATCTCCAGATGAAGATGCCGGGCCCCGGTGGCCCCATCACCGTCCATGGCGACCTCAAAGTCGCGCTTGCTTGCATGGAGCAGCGCGCGGACCACCTCGCCGTGGCATCCAAGCCCGCGGGTGGCGACGAGAGGCTCAGCACCTCCGTCCCAGCCGCCCCGAGGCAGCGGATGATCACGTGCGACGAGGTCCCGATCAAGCAGGAAGACGCGCTCGTCTCCTTCCTGCGGGCAAACGCCGACGTCTTCGCCTGGAGACCAGCGGACATGCCCGGGGTCCCCAGGGAGGTGATTGAGCACCGTCTCACCGTACGGCCGGGCGCAAGGCCGGTCCGGCAGAAAGTGCGGCGGCAGGCCCCGGAACGTCAAGCCTTCATCCGCGAGGAGGTGGCGCGACTTCTGGAGGCCGGATTCATCCGAGAGGTCATCCATCCGAAGTGGCTGGCGAACCCGGTCGTCGTTCCCAAGGCGAACGGCAAGCTTCGGATGTGCATCGACTACACCGACCTTAACAAGGCATGTCCTAAGGACCCTTACCCCCTGCCACGCATAAATCAGATTGTCGACTCCACCGCGGGGAGACCTTACTCGGATCTAGCGGAAACTTTCGAAAGTCTCCGCACCGCCCGCATAAAGCTGAACCCCGACAAGTGCGTGTTCGGCGTGCCTGCGGGCAAGCTTCTCGGGTTCTTGATCTCTGCCCGAGGCATTGAGGCCAACCCCGAGAAGATACGAGCTATAGAGCGGATGCGCCCCCCCAGCAAGCTTAGGGATGTGCAATGCGTCACTGGCTGTATGGCCGCCCTAAGTCGGTTCATATCGAGGCTGGGAGAGAAGGCGCTACCCCTATTTAAGCTCCTCAAACGCTCCGGGCCGTTTATCTGGACGGAGGAGGCTGAACGGGCCCTCACTCAGTTGAAGGCGTACCTCAGTTCTCCCCCAGTCCTGGTCGCCCCGGAGCCAGATGAGCCGTTGCTACTCTACCTGGCGGCAACTCCGCAGGTGGTCAGCGCGGCGTTGGTCATGGAGCGCGACGAGGACGACCCTCGCTCCGCGCATCCCCACCCTGTGTCGACTCGACCCGGGAGAGAGCAGGGAGGAGAGGCCCCCGAGCCGAACGGCGGCCCGAGGCCCCCGACGACCGGAGCTGGCCCTCTGCCCGCTTGTCCGACGGTGCCAGGCGCCCCCGACCCCCAGGATGGCCCCGGGGCCACTGCGGGAAGGCCGCGCCTGTCGCCTTCCGACCCCGAGGTCGTCGACACAGAAGCCGAGTGCGCCCCGCGCGGCCTCTCGGACGAAAAGCGCCCTATAGATGCGGCCCCTGGCGAAGAGGATCGGCCCCGACAAAAGGTGCAGCGGCCCGTCTACTTTGTTAGTGAGGCCTTCCGGGACGCCAAGACCCGATACCCTCAGGCCCAGAAGATGCTTTACGCTATTCTGATGGCTTCGAGGAAGTTGCGCCATTATTTCCAGGCGCATCGGGTCACGGTGGTTACGTCCTACCCCCTCGGCCAAATCTTGCATAACCGAGAGGGTACTGGACGGGTGGTGAAATGGGCAATCGAACTCTCTGAGTTCGATTTGCACTTTGAACCACGCCACGCGATCAAGAGCCAGGCCCTCGCCGACTTTGTGGCAGAGTGGACACCGGCTCCCGAGCCCGTCTCCATCCCCGAGGCCAGCTCGGGCCCTTCGCAGCTGCCTCACACCGCCTATTGGGTGATGCAGTTCGACGGCTCCCTGTCTCTTCAGGGCGCCGGTGCGGGGGTCACGTTGACCTCGCCGAGCGGAGATGTCCTCAAATACCTGGTCCGCCTTGACTTTCGGGCAACCAACAATATGGCAGAGTACGAGGGACTCCTTGCGGGACTCAGAGTGGCGGCTGGACTGGGGATCCGCCGCCTCCTGGTCTCCAAGGAGTACCAGTGCTCTGACCCGCAGATGGATGCTTACGTGCGCCAGGTGCGGCGTATGGAGCGCCATTTTGACGGGATAGAGCTTCGGCACGTGCCCAGACGGGATAACGCGGTCGCCGACGAACTCTCAAGGCTCGCTTCCTCGCGAGCCCAGACCCCACCGGGCGCCTTTGAAGAAAGGCTTGCCCAGCCGTCGGCGCGACCCGACCCCCTAGGGGAGACGGACGAGCCTGAACGGCCCCCGAGGCCCGTCGGAGTCCAGGCCTCGGGACCCGAGGGGGGCGCTCCCAGCTCCCTTAGATTGATTGCTTGGATCGCTGAGATCCAGGCGTACCTCGCAGATAAGACTCTACCCGAGGACCGCGAAGGGAGTGAACGCGTCCAGCGCATCTCCAAGCGCTACGTGCTGGTGGAAGGGACCCTCTATCGGCACGCGGCTAACGGAGTCCTCCTGAAGTGCATTCCTCGGGAACAAGGCGTCGAGCTTCTTGCCGATATCCATGAAGGCGAGTGCGGAGCCCACTCTGCCTCACGCACCTTGGTTGGCAAGGCCTTTCGCCAGGGTTTCTATTGGCCGACGGCTCTCAACGATGCGATCGACCTGGTCTGGCGGTGCAGGGCGTGCCAGTTCCATGCCAAGCAAACCCATCAGCCGGCCCAGGCCCTGCAGACCATACCTCTTTCATGGCCGTTTGCTGTCTGGGGGCTCGATATCCTGGGTCCGTTTAGACGGGCCCCGGGCGGGTTCGAGTATCTGTATGTCGCTTTCGACAAGTTCACTAAGTGGCCCGAGGCTTATCCGGTCATCAAGATCGATAAGCACTCCGCACTTAAATTCATCAGGGGTATCACTGCTCGGTTTGGGGTGCCTAACCGTATCATTACGGATAACGGCACCCAGTTCACTAGTGAGCTCTTCGGTGACTACTGCGAAGACATGGGCATTAAGCTCTGCTTCGCCTCTCCCGCCCACCCTAGAAGCAATGGCCAAGTGGAGCGCGCCAACGCAGAAATCCTCAAGGGCCTCAAAACCAAGACCTTCAACATCCTCAAGAAGCATGGCGACTCGTGGATCGAGGAGCTGCCAGCGGTGCTCTGGGCGAACCGAACCACGCCAAGCCGAGCAACCGGGGAAACGCCTTTCTTCCTCGTCTACGGCGCGGAGGCGGTTCTCCCATCCGAGCTCACCCTGAGGTCCCCTCGGGCCACCATGTACTGCGAGGCTGATCAAGATCAGCATCGCAGAGATGACCTCGACTTCTTGGAAGAACGAAGGCGGCGCGCGGCCCTTCGAGCCGCGCGCTACCAGCAGAGCCTGCGGCGCTACCATCAGCGTCACGTCCGGGCCCGATCACTCTGCGTCGACGACCTCGTCCTACGCCGCGTCCAAACGCGTGCTGGACTGAGCAAGCTCTCACCAATGTGGGAGGGTCCGTATCGAGTGATCGGCGTCCCCCGGCCGGGCTCCGTTCGGCTGGCCACGGGCGACGGCACAGAGCTGCCTAACCCATAG

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Protein seq

MAERAVAHNLSPSASGEDGEQNPRRRARTPLSPSRRSLGREEALEEVERSATSPHAGDGEGRRDGERRLLVYGDGSTPQGALQAAGALLRHPPVIPDPETPTRRWLDDVANLVMTAQQRLGAGWWSSATKATGVATAGSVSSRRRARRAAAATRRSSAIPSSTPPTQEDVRRGPDARFNIERRCNDRRAAHASEGASSSGAPLRSGHGGQPPVSPVGGAGCRAFVASLRNVRWPPRFRPTITEKYDGSINPSEFLQIYTTGIEATGGDDRVMANFFPMALKGQARGWLMNLPPASVHSWEDLCQQFTMNFQGTYPRPGEEADLHAVQRGDDESLRSYIQRFCQVRNTIPCIPAHAVIYAFRGGVRHNRMLEKIASKEPQTTAELFQLADRVARKEEAWTWNSSGSGVAASAAPGSAARSGRRDRRRKKRSAHSDDEGHVLAVEGALRATRKGRPASDKKKEAGAPSRERPTSKWCTVHNTSLHDLADCRAVKSLAERTRKWEEERRQERREGNTPAAPAGNRRGEAKQKAPAEDINDGDDDLGFQEPEATVATVDGGACAHASRRSLKAMKRELLAVAPTHEATRRARWSEVALTFDQTDHPPCVARGGQIAMVVSPTVCNVKLGRVLVDGGAALNILSPAAFDAIKAPGMVLRSSQPIIGVTPGHTWPLGHIDLPVTFGGSANFRTERVNFDVADLSLPYNAVLGRPALVKFMVAVHYAYLQMKMPGPGGPITVHGDLKVALACMEQRADHLAVASKPAGGDERLSTSVPAAPRQRMITCDEVPIKQEDALVSFLRANADVFAWRPADMPGVPREVIEHRLTVRPGARPVRQKVRRQAPERQAFIREEVARLLEAGFIREVIHPKWLANPVVVPKANGKLRMCIDYTDLNKACPKDPYPLPRINQIVDSTAGRPYSDLAETFESLRTARIKLNPDKCVFGVPAGKLLGFLISARGIEANPEKIRAIERMRPPSKLRDVQCVTGCMAALSRFISRLGEKALPLFKLLKRSGPFIWTEEAERALTQLKAYLSSPPVLVAPEPDEPLLLYLAATPQVVSAALVMERDEDDPRSAHPHPVSTRPGREQGGEAPEPNGGPRPPTTGAGPLPACPTVPGAPDPQDGPGATAGRPRLSPSDPEVVDTEAECAPRGLSDEKRPIDAAPGEEDRPRQKVQRPVYFVSEAFRDAKTRYPQAQKMLYAILMASRKLRHYFQAHRVTVVTSYPLGQILHNREGTGRVVKWAIELSEFDLHFEPRHAIKSQALADFVAEWTPAPEPVSIPEASSGPSQLPHTAYWVMQFDGSLSLQGAGAGVTLTSPSGDVLKYLVRLDFRATNNMAEYEGLLAGLRVAAGLGIRRLLVSKEYQCSDPQMDAYVRQVRRMERHFDGIELRHVPRRDNAVADELSRLASSRAQTPPGAFEERLAQPSARPDPLGETDEPERPPRPVGVQASGPEGGAPSSLRLIAWIAEIQAYLADKTLPEDREGSERVQRISKRYVLVEGTLYRHAANGVLLKCIPREQGVELLADIHEGECGAHSASRTLVGKAFRQGFYWPTALNDAIDLVWRCRACQFHAKQTHQPAQALQTIPLSWPFAVWGLDILGPFRRAPGGFEYLYVAFDKFTKWPEAYPVIKIDKHSALKFIRGITARFGVPNRIITDNGTQFTSELFGDYCEDMGIKLCFASPAHPRSNGQVERANAEILKGLKTKTFNILKKHGDSWIEELPAVLWANRTTPSRATGETPFFLVYGAEAVLPSELTLRSPRATMYCEADQDQHRRDDLDFLEERRRRAALRAARYQQSLRRYHQRHVRARSLCVDDLVLRRVQTRAGLSKLSPMWEGPYRVIGVPRPGSVRLATGDGTELPNP

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.000000 0.000000 0.000000

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) NA NA NA NA NA
Nipponbare | IRGSP 1.0 | MSU LOC_Os02g22400 RBH 0.0 0.0 0.0
Nipponbare | IRGSP 1.0 | RAP-db NA NA NA NA NA
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_01g0034311 SBH 0.043118 2.382331 1.872674
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_01g0033831 SBH 0.076553 2.436650 1.151488
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) NA NA NA NA NA
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) NA NA NA NA NA
PR 106 | Os127742RS1 | Gramene(+IsoSeq) NA NA NA NA NA
Minghui 63 | MH63RS3 | HZAU OsMH63_01G0494600 RBH 0 0 0
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_01g0033031 SBH 0.043880 0.160660 0.697742
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_01G0602700 SBH 0.011484 0.0024565 0.0008355
LIMA | Os127564RS1 | Gramene(+IsoSeq) NA NA NA NA NA
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) NA NA NA NA NA
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) NA NA NA NA NA
LIU XU | Os125827RS1 | Gramene(+IsoSeq) NA NA NA NA NA
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) NA NA NA NA NA
N22 | OsN22RS2 | Gramene(+IsoSeq) NA NA NA NA NA
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) NA NA NA NA NA
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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