Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g50410 | OGI:01087380 | 11/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:28938971-28940927 | ||||||||
| Gene Symbol | MAP3K6, OsMKKK70 | ||||||||||
| DNA seq | TCAGCATGTGGTTGCCAATTGAACACCAATATCTAGATCACTTCCAAAGGTTCGATCAATCCAGCTCGAATGTGGCAATCTTGAGCTCAGATTCCACTGGTGTTTTTGCAATGCTGTGAGCCGGTGGGCATCAAGCCCCTAAAAGAACAGAGGAAGATGAACAGGGCCTGTTCACAGTGCCTCGCTATCCATCCAAAAAGGTAAACAGCAGAGTTAGCTTTGACCTCTCCTCTCCTAAAGTGGATCATCGATATCTTTTTATTAAAAAAGAAATTCCACACAAAAAGGAGAGAGGAAGTACGATATGACGTCCTCGTGGGCCTAAAGTGACGTCATAGTGACGCGCAGTAAAACGGCATGCTTTTCTCCGTACGGCTCAACAACGGGTTTAGTGAAATCGCCGGGTGTAATCACACGTGATTAAGTCGCAATCCAGTATTCCGTACGCAAAACTGCTTGCAGAACAGACCTGCCAACTTTACTAGAAGGGGATGGATTGCCGTTCGCTAACGACTCCGATCCTGATCGCTGGAAACATGAGCTAATTTTGACATATTCATAATTCATGTCTCGCTCGAACTAATTTTGGTCTCGAACTGTCACGTGATTGATTTGCAAAGTAGTAAAGGAGACGTAATGAAAAGTTAAATGCACCAACTGGTTGGTCACAACGAGAGGAAATTTGAGCGGAATTTAATTTTATTACTCTGTTCCTGTTACAAACACAATCGAATCTCACTGATTCAGTCCCGTCAGTATCGAACGGGTGAAAAATTTCATTTTTACCACTGCCAAGATGTACGTGCAGGTAACTGCCCTGCCTAATGGAGGATTCGATCGCTTCTGCTTCATTGCGCGGGACATGGTTGACGCCATCCGCGGCGACGGCGAACTGCTCCATCTCTGGGTCAGACAGTTCTGCCCAGACGAAGTAGTCCGCGTCGCTGGCCGGCGGCGTGACGGCGGCGAAGGAGACCTCGTCGTGCACCTCGATCCATCCTTCGTCGGAGTCCCAGTCCGGCAAGGCCGAGGCGGCGCACGCCAATGCACCGATCCTCTCCGCCGCGCCGGTTGGCATCTCGTCGTCCTCGTCGTCGGTGTCTGAGTCCCAGAACGCGTCATGCAGCGTGCTCTTGGGGGATGCACGTTCTTGCTTCGCCGGCTCCGGCCAGCGGTCGAGGGCCGCGGCGGAGGCAACGAATGGGTGTTCCAGGAGCTGCGCCGCCGTTGACCTGTCGGACGCGTTCCTCTCGAAGCAGCCATCCAGGAAGTCCTTGGCCTCCGCTGACAGCCACCCGGGAACCTCCGGCACGGCGTTCGTGTACCCGATCCGGTGGACTGCGGCAAGGATGTCGTCCATGTCGCTCCACGGCGCGCGGCCGGTGGCCATCTCGATGATGGTGCAGCCGAGGGCCCAGACATCGGCCGCCGGCCCCTGCTCCTCCCCGCGCGCCACCTCCGGCGCCATGAACGCCGGCGTGCCGCCGATCGGCCCCGCCGAGTCCATGACCCTCGCGCACCCGAAGTCCGTGAGCCTCGCCCGGCCGTCGCTCCCGATCACGACGTTCCTCGCCTTGACGTCGCCGTGCACCAGCGAATTCCCGTGGAGGTACGCCAGCCCCCTCGCCACGTCAGCGGCGTACGCCCGGATGGCCGGCTCCGGGAGGCAGCCCCCGTTCCTGGCGGCCTCGTCGGCGAGCGACCCGCCGGGCGCGAACTCGAGGAACAGCTGGTACTCGCCGCCCGCGGCGGCGCGCGATCCGAGGCAGGGGACGATGTGCGGCGAGCAGAGCCCGGACAGGACACGCCCCTCTCGCCGCAGCTGCGCCGCGGCGCCGCCGGCGGAGGCCGACTTGACGGCCATGAGCTCCCCTGAGTCGTCGTCGGACGCGAGCCACACCACGGCGCCGGACGCCCCGCGGCCCAGCGTGCGCACCCGCCTGAGCTGCTTAGCCAT
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| CDS seq | ATGGCTAAGCAGCTCAGGCGGGTGCGCACGCTGGGCCGCGGGGCGTCCGGCGCCGTGGTGTGGCTCGCGTCCGACGACGACTCAGGGGAGCTCATGGCCGTCAAGTCGGCCTCCGCCGGCGGCGCCGCGGCGCAGCTGCGGCGAGAGGGGCGTGTCCTGTCCGGGCTCTGCTCGCCGCACATCGTCCCCTGCCTCGGATCGCGCGCCGCCGCGGGCGGCGAGTACCAGCTGTTCCTCGAGTTCGCGCCCGGCGGGTCGCTCGCCGACGAGGCCGCCAGGAACGGGGGCTGCCTCCCGGAGCCGGCCATCCGGGCGTACGCCGCTGACGTGGCGAGGGGGCTGGCGTACCTCCACGGGAATTCGCTGGTGCACGGCGACGTCAAGGCGAGGAACGTCGTGATCGGGAGCGACGGCCGGGCGAGGCTCACGGACTTCGGGTGCGCGAGGGTCATGGACTCGGCGGGGCCGATCGGCGGCACGCCGGCGTTCATGGCGCCGGAGGTGGCGCGCGGGGAGGAGCAGGGGCCGGCGGCCGATGTCTGGGCCCTCGGCTGCACCATCATCGAGATGGCCACCGGCCGCGCGCCGTGGAGCGACATGGACGACATCCTTGCCGCAGTCCACCGGATCGGGTACACGAACGCCGTGCCGGAGGTTCCCGGGTGGCTGTCAGCGGAGGCCAAGGACTTCCTGGATGGCTGCTTCGAGAGGAACGCGTCCGACAGGTCAACGGCGGCGCAGCTCCTGGAACACCCATTCGTTGCCTCCGCCGCGGCCCTCGACCGCTGGCCGGAGCCGGCGAAGCAAGAACGTGCATCCCCCAAGAGCACGCTGCATGACGCGTTCTGGGACTCAGACACCGACGACGAGGACGACGAGATGCCAACCGGCGCGGCGGAGAGGATCGGTGCATTGGCGTGCGCCGCCTCGGCCTTGCCGGACTGGGACTCCGACGAAGGATGGATCGAGGTGCACGACGAGGTCTCCTTCGCCGCCGTCACGCCGCCGGCCAGCGACGCGGACTACTTCGTCTGGGCAGAACTGTCTGACCCAGAGATGGAGCAGTTCGCCGTCGCCGCGGATGGCGTCAACCATGTCCCGCGCAATGAAGCAGAAGCGATCGAATCCTCCATTAGGCAGGGCAGTTACCTGCACGTACATCTTGGCAGTGGTAAAAATGAAATTTTTCACCCGTTCGATACTGACGGGACTGAATCAGGGCTTGATGCCCACCGGCTCACAGCATTGCAAAAACACCAGTGGAATCTGAGCTCAAGATTGCCACATTCGAGCTGGATTGATCGAACCTTTGGAAGTGATCTAGATATTGGTGTTCAATTGGCAACCACATGCTGA
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| Protein seq | MAKQLRRVRTLGRGASGAVVWLASDDDSGELMAVKSASAGGAAAQLRREGRVLSGLCSPHIVPCLGSRAAAGGEYQLFLEFAPGGSLADEAARNGGCLPEPAIRAYAADVARGLAYLHGNSLVHGDVKARNVVIGSDGRARLTDFGCARVMDSAGPIGGTPAFMAPEVARGEEQGPAADVWALGCTIIEMATGRAPWSDMDDILAAVHRIGYTNAVPEVPGWLSAEAKDFLDGCFERNASDRSTAAQLLEHPFVASAAALDRWPEPAKQERASPKSTLHDAFWDSDTDDEDDEMPTGAAERIGALACAASALPDWDSDEGWIEVHDEVSFAAVTPPASDADYFVWAELSDPEMEQFAVAADGVNHVPRNEAEAIESSIRQGSYLHVHLGSGKNEIFHPFDTDGTESGLDAHRLTALQKHQWNLSSRLPHSSWIDRTFGSDLDIGVQLATTC |
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| Function | Mitogen-activated protein kinase kinase kinase 17 [UniProtKB/Swiss-Prot:O80888] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g50410 | LOC_Os01g50410.1 | Chr01 | 28938971 | 28940927 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCTAAGCAGCTCAGGCGGGTGCGCACGCTGGGCCGCGGGGCGTCCGGCGCCGTGGTGTGGCTCGCGTCCGACGACGACTCAGGGGAGCTCATGGCCGTCAAGTCGGCCTCCGCCGGCGGCGCCGCGGCGCAGCTGCGGCGAGAGGGGCGTGTCCTGTCCGGGCTCTGCTCGCCGCACATCGTCCCCTGCCTCGGATCGCGCGCCGCCGCGGGCGGCGAGTACCAGCTGTTCCTCGAGTTCGCGCCCGGCGGGTCGCTCGCCGACGAGGCCGCCAGGAACGGGGGCTGCCTCCCGGAGCCGGCCATCCGGGCGTACGCCGCTGACGTGGCGAGGGGGCTGGCGTACCTCCACGGGAATTCGCTGGTGCACGGCGACGTCAAGGCGAGGAACGTCGTGATCGGGAGCGACGGCCGGGCGAGGCTCACGGACTTCGGGTGCGCGAGGGTCATGGACTCGGCGGGGCCGATCGGCGGCACGCCGGCGTTCATGGCGCCGGAGGTGGCGCGCGGGGAGGAGCAGGGGCCGGCGGCCGATGTCTGGGCCCTCGGCTGCACCATCATCGAGATGGCCACCGGCCGCGCGCCGTGGAGCGACATGGACGACATCCTTGCCGCAGTCCACCGGATCGGGTACACGAACGCCGTGCCGGAGGTTCCCGGGTGGCTGTCAGCGGAGGCCAAGGACTTCCTGGATGGCTGCTTCGAGAGGAACGCGTCCGACAGGTCAACGGCGGCGCAGCTCCTGGAACACCCATTCGTTGCCTCCGCCGCGGCCCTCGACCGCTGGCCGGAGCCGGCGAAGCAAGAACGTGCATCCCCCAAGAGCACGCTGCATGACGCGTTCTGGGACTCAGACACCGACGACGAGGACGACGAGATGCCAACCGGCGCGGCGGAGAGGATCGGTGCATTGGCGTGCGCCGCCTCGGCCTTGCCGGACTGGGACTCCGACGAAGGATGGATCGAGGTGCACGACGAGGTCTCCTTCGCCGCCGTCACGCCGCCGGCCAGCGACGCGGACTACTTCGTCTGGGCAGAACTGTCTGACCCAGAGATGGAGCAGTTCGCCGTCGCCGCGGATGGCGTCAACCATGTCCCGCGCAATGAAGCAGAAGCGATCGAATCCTCCATTAGGCAGGGCAGTTACCTGCACGTACATCTTGGCAGTGGTAAAAATGAAATTTTTCACCCGTTCGATACTGACGGGACTGAATCAGGGCTTGATGCCCACCGGCTCACAGCATTGCAAAAACACCAGTGGAATCTGAGCTCAAGATTGCCACATTCGAGCTGGATTGATCGAACCTTTGGAAGTGATCTAGATATTGGTGTTCAATTGGCAACCACATGCTGA
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| Protein seq | MAKQLRRVRTLGRGASGAVVWLASDDDSGELMAVKSASAGGAAAQLRREGRVLSGLCSPHIVPCLGSRAAAGGEYQLFLEFAPGGSLADEAARNGGCLPEPAIRAYAADVARGLAYLHGNSLVHGDVKARNVVIGSDGRARLTDFGCARVMDSAGPIGGTPAFMAPEVARGEEQGPAADVWALGCTIIEMATGRAPWSDMDDILAAVHRIGYTNAVPEVPGWLSAEAKDFLDGCFERNASDRSTAAQLLEHPFVASAAALDRWPEPAKQERASPKSTLHDAFWDSDTDDEDDEMPTGAAERIGALACAASALPDWDSDEGWIEVHDEVSFAAVTPPASDADYFVWAELSDPEMEQFAVAADGVNHVPRNEAEAIESSIRQGSYLHVHLGSGKNEIFHPFDTDGTESGLDAHRLTALQKHQWNLSSRLPHSSWIDRTFGSDLDIGVQLATTC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.216066 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0699500 | RBH | 0.0 | 0.0 | 0.882064 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g46760 | SBH | 0.0 | 0.474696 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0699500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0030370 | RBH | 0.0 | 0.0 | 0.411344 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0029990 | RBH | 0.0 | 0.0 | 0.838919 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0030340 | RBH | 0.0 | 0.0 | 0.627434 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0029610 | RBH | 0.0 | 0.019861 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0029280 | RBH | 0.0 | 0.0 | 2.325252 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0480600 | RBH | 2.5381065 | 53.89843 | 59.6600625 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0029010 | RBH | 0.0 | 0.051920 | 0.404378 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0471100 | RBH | 3.9254675 | 52.62718 | 0.988999 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0029260 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0029200 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0029460 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0029630 | SBH | 0.404072 | 0.160759 | 0.659123 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0029440 | SBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G029870 | SBH | 0.0 | 0.214505 | 0.501729 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0029560 | RBH | 0.0 | 1.331000 | 5.009419 |
