Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g49770 | OGI:01086440 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:28582843-28586527 | ||||||||
| Gene Symbol | OsRFPH2-23 | ||||||||||
| DNA seq | ATAAGAAAAGGTCTTTTTGCCAGGAAGATACAAGTATTTGTAATGGCAGCACCGCAGCAGCTAGTATCTTGGCTAGATAGCTGCTAATACAGTATTGACTACTTGCCGAATCAGCTTCATTGGAAACGTAACTGAAAACACGATTTTGTTAAAAGAAACTCGCAGAGTGGTAATATTCAGACGTGCTCATCTGATTGTTTCAAGCTAAAGCAACTAACACGTGAAGGATCGAATGAGGTTGCACAAGACACTAGCTGCCGTCCCGGACTGTGCCAATATTGACACCTGAGATAAGAGTAACATATATTTGATAAAGGATGCCTCAATATGGCATTTCTATCTGCAAATGCAAAAGAATGGATGATGTGTTTATACAATAACATATGTAATTGACTGTACAGAGCACAAACAAACATGTTTTGAAAGTTTGACCCAGGTATACAATCGTCGTTGCCCGGAGTCCGGACTTCAAGTCTTGGTAACGGCAGTCTTGCAAACTGGGCAAACGTTCTTCTGAGAAAGCCATTGCTTAATGCAGTAAACATGGTAGCTGTGGCCGCAATCCAGCCTCCCCATCTCTTCATTGGCTTCAAACTCTTCCTGCAACACATTGACATGAGAATGAAGTTTGTTCACATGCCAGACACTGGATACCCTGTATAATGACTGAAGGGAAGAAGATAACTCAAGAGAAGAGGTTGTGGCATACTTGACAAATACTGCATTTCTTTTCCATTTCTGTTGAATACCGGAACGAGGAGTCAAAGGCTGGGTGTTTGACCTTCCTAAGGTTGCGAACTATCTCATCCTCACGCAATCCAGTGTTGACATAACCTATTTTATCTCCAAGCTCAAGCAACTCCTGTAAAACGAAGCAATTGATGATGATGGTGGTGGTGGTGGTGAAAAGTGATGCTACAAGGCAAAGAGACAAACCTCGTATGTCATGTTATCAACATCAAGGCGCCAATCCTGGTACCGATCATACATGCTCATTCCTCCCAACAGAACTCTTGTCTGAAACATCATGATCTGCCATATCAAAAACAGTTTCATTAAGTATTTGAACTCGCTACCTTTGATAAGGCTGCTTATTGAGCTAGCAACATGCATAATTATGTATATGTCTGCCAGGAAGATCACAGATTAACAACTGCACCGCTTAGCACAAGTTAACCCTCAATCACTGACCATCGGGCTGGTTATTCTTCCAAGTAGAGTACAAAGTGTGCAGCTAAATATGCTTCTACAGCTGCACTGACGTATCTCTTATATTCTTTACGATTACATAGAAAGGTTAGATTGAAGCACCAGATAAATATATAGTAGCTTTCTTTACGACTGTTTGGAATGTGCACCAAAATCAAATATGAATTCTTATGACAGTGGAAAACCTAAGTCAGAAAACAGAGGTATAGCACAGAAGTAAAACTAGATAGAAAAAATGTTTATAGGTAAGGAAATGGACTTCCCTGAACTAGGCACCAAAGCACATTAAAGCAAATCCCCTCAAATATATATCTTGATAGGCAATGGCAGTGCGGGACCGACAATCCTTGTGGATCTTGATGTTGAGCTATTATTAAGGAGTCATCACCAATCACATGCCCACATGAAATCCAGAAGGACCAGAAGGAATGACTACAACTCTAGATCTGATTATGACTGAAGCAACAGGAACATGATAAGGAGCGTTGGTCCCCCTTAAGCACCAAAAGAATAGTTCAGTCAAGCAGCACAGCCGAGCACTAATCATAAATGGTGAACTGCTAGGACTCTCGATCTGCCATCGGAGGCAACCAATCATTCACGCACCATACCAGCATGCCCATTCCTACCAACCGTACGATCCACCACAGAACAGCATGACAGTAGATAGAATAAACCATACTATTGCTTGGCATTCCCAGGTGTGCTCCAGCACTCCTTGCCCGCATCCTGAAATACTAGCACCGTTGAGACAACAATTGACCATTACCGGCAACATTTCTGATCAGCTCAGCAAGAGTATCCAGCATTTATACTTGTAGTTGGCACGGTGTATACACACAACGAGAAGCATTCATGGAAGTGTATGACCATGGTTGAGAGGTCTCTTTCCAAAGCTGTGGCCACATCCCACTGTCTCGTTCCCTCCCTTCTCAGCCGCATTAATCCTAAACGAGTGTACGGCCACTACGCTAACCAGCGCGCATAATGCAGGTGCCATGGCTTGCAACTGCAACCGCTTATACAATTATTGTGCGCGCCTGTGTAAGGCTGCCGATTAGTTAACCTCCAAGAAGGCCACGATCTCACGTCACGTTTAGCGCACGAAAGATGCAAGTCAACCACTTCCAACGCCCACCCGGCCAGCCGGCCACCCCCCAGGTTCACTCGCGCACCACCAGACAATCAATCTACTCCACTTCTAATACTACTACTATTAATCTATATCACGCGTTACAGCTGCTTAATACGCATGTCAGATCACGCGCTAAACTACCCTACGCACGGGAATCTTATGCAGGCAGGCAGCGTGTCGCACCACCAACCGCTGTCAGCATGCGCACTTGTTGCGGGCCGTGTCCATCTCCGACTTAGGAGTACGTTGGAAAAATGTATCTACCGATGCATGCAATGCGGTGGCTCAGGACAAGTGTGCAAGCAAGCAAAATGCAGTGTGGGGGCAACGAGGAAACGAACGAACGTTTGTTGCAGTGTGCGCTACTGTGCCAGTACTAGTACTGCTGCTACTACCGTGAGCCTGTGACGTTTTTTACCTCTTCCTCGAGGCCGACGGGGGAGTGGCGGTACCCGCGCATCCGGCGGAGGCGGCCGGAGGGGAGGAGGTCGGCGCCGAAGAAGGGCGCGACGTCGAGGTGCGGCGGCGGCGGCGAGTCCATGAACGACGACGATATCTGCTCCTGCACGGTCACCCTCCTGGACAGGCACGGTCTCTGCGCAAAGGCAAAAAAAAAAAAAAAGCGTAGCGGGTGAGATCATCATCAACTTGGTGAGGAGGGAGAGAGAATTTCAGAGAAACATGGCAAAGATTCCGCTCGCGCACAGCGCGCATCGGTACAGGGGAATTCAGTACGCCCAGAAGAGATACATGTCACATGTTTAGATAACAAGAACTTAATTAGACTGACCAAACACGACATTAAAGACTGGCTTTAATTGGTTCGTCAGGAACTCAGGACTATACAAGTGGTAGAACAGTGGCAAATGCTACGGTTTTTTTAAAGCCGCCAGAATTGATTGTGGGAGGAAAACAGCAACAGAAGAACGGAAAAAAAGAACAGAGTATTGAATGTTGAATTTAAATCTTTTTTCGCCAACAGACAAAAAGGAGTGGAAGAAAAGGCACAAAGAAACACAAGTAAATGAGAGACGAAAACTCCGAATCGATCGACCACCCACCGGAAAGCAAAGAACAAGCAAAACCAATCGGTTCCAAGAGCACGAACAGATCCGAACATGAGGCGAAATCAACAAGTAGAAGCGAAGGATCAACGGCATCCATCCATCCACGCACGCAAGCGACGAACCTCTCTGTGCGGCCTCTCCGCGTCGCCGCCACGGCCTCTCCCCACCATCTGGTGCCGCGCCACCACGCAGTCCACGGACGACGCCTCCGCGGCGAACGGTATCCCAGGCGCGCACCACACGTCGGCGCCGATCCCTCCACCCACGAGGTGGC
More
|
||||||||||
| CDS seq | ATGGTGGGGAGAGGCCGTGGCGGCGACGCGGAGAGGCCGCACAGAGAGAGACCGTGCCTGTCCAGGAGGGTGACCGTGCAGGAGCAGATATCGTCGTCGTTCATGGACTCGCCGCCGCCGCCGCACCTCGACGTCGCGCCCTTCTTCGGCGCCGACCTCCTCCCCTCCGGCCGCCTCCGCCGGATGCGCGGGTACCGCCACTCCCCCGTCGGCCTCGAGGAAGAGATCATGATGTTTCAGACAAGAGTTCTGTTGGGAGGAATGAGCATGTATGATCGGTACCAGGATTGGCGCCTTGATGTTGATAACATGACATACGAGGAGTTGCTTGAGCTTGGAGATAAAATAGGTTATGTCAACACTGGATTGCGTGAGGATGAGATAGTTCGCAACCTTAGGAAGGTCAAACACCCAGCCTTTGACTCCTCGTTCCGGTATTCAACAGAAATGGAAAAGAAATGCAGTATTTGTCAAGAAGAGTTTGAAGCCAATGAAGAGATGGGGAGGCTGGATTGCGGCCACAGCTACCATGTTTACTGCATTAAGCAATGGCTTTCTCAGAAGAACGTTTGCCCAGTTTGCAAGACTGCCGTTACCAAGACTTGA
More
|
||||||||||
| Protein seq | MVGRGRGGDAERPHRERPCLSRRVTVQEQISSSFMDSPPPPHLDVAPFFGADLLPSGRLRRMRGYRHSPVGLEEEIMMFQTRVLLGGMSMYDRYQDWRLDVDNMTYEELLELGDKIGYVNTGLREDEIVRNLRKVKHPAFDSSFRYSTEMEKKCSICQEEFEANEEMGRLDCGHSYHVYCIKQWLSQKNVCPVCKTAVTKT |
||||||||||
| Function | Probable E3 ubiquitin-protein ligase RHG1A [UniProtKB/Swiss-Prot:Q9FMM4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g49770 | LOC_Os01g49770.1 | Chr01 | 28582843 | 28586527 | - | MSU_osa1r7 | ||
| CDS seq | ATGGTGGGGAGAGGCCGTGGCGGCGACGCGGAGAGGCCGCACAGAGAGAGACCGTGCCTGTCCAGGAGGGTGACCGTGCAGGAGCAGATATCGTCGTCGTTCATGGACTCGCCGCCGCCGCCGCACCTCGACGTCGCGCCCTTCTTCGGCGCCGACCTCCTCCCCTCCGGCCGCCTCCGCCGGATGCGCGGGTACCGCCACTCCCCCGTCGGCCTCGAGGAAGAGATCATGATGTTTCAGACAAGAGTTCTGTTGGGAGGAATGAGCATGTATGATCGGTACCAGGATTGGCGCCTTGATGTTGATAACATGACATACGAGGAGTTGCTTGAGCTTGGAGATAAAATAGGTTATGTCAACACTGGATTGCGTGAGGATGAGATAGTTCGCAACCTTAGGAAGGTCAAACACCCAGCCTTTGACTCCTCGTTCCGGTATTCAACAGAAATGGAAAAGAAATGCAGTATTTGTCAAGAAGAGTTTGAAGCCAATGAAGAGATGGGGAGGCTGGATTGCGGCCACAGCTACCATGTTTACTGCATTAAGCAATGGCTTTCTCAGAAGAACGTTTGCCCAGTTTGCAAGACTGCCGTTACCAAGACTTGA
More
|
|||||||
| Protein seq | MVGRGRGGDAERPHRERPCLSRRVTVQEQISSSFMDSPPPPHLDVAPFFGADLLPSGRLRRMRGYRHSPVGLEEEIMMFQTRVLLGGMSMYDRYQDWRLDVDNMTYEELLELGDKIGYVNTGLREDEIVRNLRKVKHPAFDSSFRYSTEMEKKCSICQEEFEANEEMGRLDCGHSYHVYCIKQWLSQKNVCPVCKTAVTKT
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g49770 | LOC_Os01g49770.2 | Chr01 | 28582843 | 28586527 | - | MSU_osa1r7 | ||
| CDS seq | ATGCATGTTGCTAGCTCAATAAGCAGCCTTATCAAAGGTAGCGAGTTCAAATACTTAATGAAACTGTTTTTGATATGGCAGATCATGATGTTTCAGACAAGAGTTCTGTTGGGAGGAATGAGCATGTATGATCGGTACCAGGATTGGCGCCTTGATGTTGATAACATGACATACGAGGAGTTGCTTGAGCTTGGAGATAAAATAGGTTATGTCAACACTGGATTGCGTGAGGATGAGATAGTTCGCAACCTTAGGAAGGTCAAACACCCAGCCTTTGACTCCTCGTTCCGGTATTCAACAGAAATGGAAAAGAAATGCAGTATTTGTCAAGAAGAGTTTGAAGCCAATGAAGAGATGGGGAGGCTGGATTGCGGCCACAGCTACCATGTTTACTGCATTAAGCAATGGCTTTCTCAGAAGAACGTTTGCCCAGTTTGCAAGACTGCCGTTACCAAGACTTGA
More
|
|||||||
| Protein seq | MHVASSISSLIKGSEFKYLMKLFLIWQIMMFQTRVLLGGMSMYDRYQDWRLDVDNMTYEELLELGDKIGYVNTGLREDEIVRNLRKVKHPAFDSSFRYSTEMEKKCSICQEEFEANEEMGRLDCGHSYHVYCIKQWLSQKNVCPVCKTAVTKT |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.709220 | 1.250672 | 0.405822 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0667700 | SBH | 3.339944 | 7.125320 | 16.496805 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g47670 | RBH | 1.628421 | 0.488869 | 0.155532 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0692700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0029900 | RBH | 1.446170 | 21.389759 | 10.522289 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0029510 | RBH | 0.180134 | 4.273169 | 3.250072 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0029890 | RBH | 0.931300 | 14.232161 | 11.772209 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0029110 | RBH | 0.364099 | 0.477574 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0028800 | RBH | 0.691404 | 9.276583 | 10.256100 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0474700 | RBH | 15.259508 | 13.9320685 | 20.9592035 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0028540 | RBH | 0.610933 | 0.718324 | 0.677242 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0464400 | RBH | 14.1777195 | 5.0551385 | 17.260036 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0028790 | RBH | 0.112023 | 0.097760 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0028690 | RBH | 0.416058 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0028980 | RBH | 4.403860 | 7.665726 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0029150 | RBH | 1.762888 | 0.677241 | 0.793330 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0028950 | RBH | 0.599299 | 9.833805 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G029390 | RBH | 0.197266 | 2.389191 | 2.591562 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0029080 | RBH | 1.252793 | 23.550850 | 3.067369 |
