Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g48610 | OGI:01084630 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:27868718-27871847 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CAACTTCCTCCAAGCAGCTAAGACATCGATCGAGGACGCATCACGCATCCATTCCCGGCTAGCTGTTCGAAAATGGCGCGGCCGTGGTGCCCCGACGACGCTTACGCCTGCCTCTCCCTCCTCCTCCTGCTCCTCCTTCCTGCAGCCATGGCCACGTCGTACTCCTCTCTCTGCAGCTTCCCCGCCGAGGCCGCCGACCTCGTCGTCACCGCCGGAGAACACCAGTCCATCGCGGACCGGCTCAATCTTCCCTTGCCCTCCGACGGTTACTTCTCCGGCGGCGACAAGCTCCTCTTCGCCTCCGACGACCACCGCCTCCCACGTTCCTTCTCCTTCTTCACTCGCCGCGCGGCCCGCACCACCGACCCCGCCATCACCCACCTCGTCGCCACGGTCACCCTCTCCGGCTACCGCTTCTTCGGCGGGCGCTCGTGGCGCACCAACGTTAGCGCCCACTCCGTGTCGTTCGACCTCGAAGGTTACTACTCCAACGACTCTGCCTCGGCGGCGCTCTGCATGGTCGGGTCAGGCTCCCGCGCAAGAGACGACGGCTTGGGTGTCGTCATCATCCCGGACGTCGCCCTCCGCCTCCGGCTGCCGCGCCCCGCCACCCTCACGCGGCCCTTCGTCACCGGCCGCCTCGAGGGCCCGGACTTCGGCGCCGTCACCCTCGTTGCGTACGCCGAGGGTGACTACAAGTACGGTGAGGCCGCCTCCTGCCCGACGCCGCCCGGCGCCGTGCGGTCCGAGAGCAAGGTGTTCGACGGAAACTTCACGTGCGACCGTCTCGGGGCGCTGCTCCGAGGCTCCTACACCATGGAGTACGCGGAGGGACGCGCGCCGAGCGGCTTCCCTCTGCGCCAACGCCTTCGCAGCATGCACATCAGCGAGATTTACTGCGGCGAGAACGGCGCCGTGCGCGCGTACATGGTGTTCGACTTCGACGACGCCTCATCGGACGCCATTCTTCTAGGCATCCACGAAGCGCCGTGGAGGCGTGGCTTCCAGGCCGACGGGGACGAGGCGCTCGTCGCCGACGGGTTCTGGAAACCGTCCCAGGGACGGCTCTGCCTCAGGGCGTGCCGCACCGTGCGCTCGACGGTGCGCGAGAGCGACTGCGGCATCCGGATCCACTTCTGGTTCCCGGCCGTGTGGTCGATCCAGCAACGGAGCTTCGTAGCCGGGATGATCCGGAACACGAGGAGCGACGACGACGGCGACACGAACAAAATGTCCGGCGCGATATCGGTGTCAAGAACTGGCTTCAGGGGCGATCTCTCCGACATCAAGTACCATTACACCAGAGTGGAGGACGCCAAGAACTACTACCACTCCAACCCAGAGCTGAGCAAGGAGAGGAACGGCAGGTTTCCGGGGAACTACTCCTACCGGGACTTCGCGTTCAGTTTGTACATCACGACACACGGCGGATACGGGTACGCCTCGCCGGTCACGCTCGGTTCCGCCATGGTTGACGGTGGCACGCTGACGGCCGACGACGCGTTCTCTCGCCACGCTGTGGCAGAGATGATCAAGCAGAGGCTCCTGAGTGTCAGCTACGAATTCGATATCCACCTCTATCGTCGCGTGAATTCATCCAGGGCGTGGAATGTGTCGCGTGTGCCTGATCGGTGGCGCGTCTCGGCGGAAGGCGTTTATGATACCAAGTCAGGTACCCTGTGCATGGTAGGTTGCCGAGTGATCAACAGTTCGTCGGACTGTCAGATCCTAGTGACCGTGCAACTCCCTGCGCTGGGCGGCGAGGACGGCACTGGGTCAATCAGCAGCCTGAGGAAGAAGAGTGACACCCTCTTCTTCGAGACGCTTGGTTTTGCTGCGTATGGTGCGCAGCCCGCCATAGAGGCGGCCCAGGCGATCTCGAGGGTGGACACGGAGCGCATCATGCTGGTGACCTCCATGACGCTGTCCTGCGTCTTCCTCGTCCTGCAGCTGCGCCACGCCAGGAAGAACCCCGACGCGCTCCCGGCCACGTCGATCACCATGCTCGCCGTCCTGGCCCTGGGTTACATGATCCCTCTCGTGGTCAACTACGAGGCCATGTTCGTGGACGACGGCGGCAGCAGAAACAGGCACTTCATCGAGCTGGCGAGGGGCGGCCGCCGGTGGCTCGAGCTGAACGAGTTCGTGCTGAGGCTCAGCACCATGGTGGCGTTCGTGCTGCAGCTGCGCCTCCTGCTTCTCGCGTTGTCCGCGAGATCAACGGCCGGAGCGAGCGGCGGCGGGGACGACCGGTGGGCAGCCGAGCGGAGCACGCTCTGGATATGCCTGCCCCTATACATCGCCGGAGCCATCCTGATCTGGATCCCCCACATCGGTGACGGGCACGATCATCAGCCGTTGGCCAGATGAAGTCCGCCATCCACGTGCCGCCGCCGCCGCCGCCGCCGCTGTCGGACGACCTCCTCTCCTACGCCGGCCTGATACTGGACGGGTTCCTGCTGCCCCAGATCGTGTCCAACGCGTTCTCGGCCTCCAGGGTGAACGCCATCTCGCCGTGGTTCTACGTGGGCGGCACCGCGATCCGCGCGGCGCCTCACGCGTACGACGGGCTCAGGGCTCGGGGGTACGTGCAGAGGTGGATCCCGTCCTACATCGACGTCTACGCGGGGCCTCGTGACGGGCTCTTCAGCGTCGCGTGGGACGTCGTGATACCGTGCGGGGCGGCGGCGCTGGCCGTGCTGCTCTTCTTTCAGCAGCGGCTCGGAGGTGATTTCCTGTGTTGTGTGAAGAGAAGGAAGCCGGGGGGATCATACGAGATAGTCTCGACGTCAACACTTTAACTGTTGACCGGCAATCCGTGGCATTCGTAGACATTAGTGCGGTTTGAATAAACAATACAGGGGGCGCAATTAGGGCCCGGGCGCCGGACGTCCTATATTTACACGGAATTGCAACTCATGTTTAAAAATGCGTCAAATTTAGTGTGGGACATTAAAAAAATAATCTTTGCTAGAATGATATCGAAAAAACGTGGTTTTGCTAGTACACTATTGAATGATTTTCGGCGGTTTTGGGAGGAAATTTTCACGAAATGATTATTTCCGCGCGCTGAAGTCCTGGAATGGATACGGCAAAAATTTAAAAATACACTGATCATTCATTTTTTTTC
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| CDS seq | ATGGCGCGGCCGTGGTGCCCCGACGACGCTTACGCCTGCCTCTCCCTCCTCCTCCTGCTCCTCCTTCCTGCAGCCATGGCCACGTCGTACTCCTCTCTCTGCAGCTTCCCCGCCGAGGCCGCCGACCTCGTCGTCACCGCCGGAGAACACCAGTCCATCGCGGACCGGCTCAATCTTCCCTTGCCCTCCGACGGTTACTTCTCCGGCGGCGACAAGCTCCTCTTCGCCTCCGACGACCACCGCCTCCCACGTTCCTTCTCCTTCTTCACTCGCCGCGCGGCCCGCACCACCGACCCCGCCATCACCCACCTCGTCGCCACGGTCACCCTCTCCGGCTACCGCTTCTTCGGCGGGCGCTCGTGGCGCACCAACGTTAGCGCCCACTCCGTGTCGTTCGACCTCGAAGGTTACTACTCCAACGACTCTGCCTCGGCGGCGCTCTGCATGGTCGGGTCAGGCTCCCGCGCAAGAGACGACGGCTTGGGTGTCGTCATCATCCCGGACGTCGCCCTCCGCCTCCGGCTGCCGCGCCCCGCCACCCTCACGCGGCCCTTCGTCACCGGCCGCCTCGAGGGCCCGGACTTCGGCGCCGTCACCCTCGTTGCGTACGCCGAGGGTGACTACAAGTACGGTGAGGCCGCCTCCTGCCCGACGCCGCCCGGCGCCGTGCGGTCCGAGAGCAAGGTGTTCGACGGAAACTTCACGTGCGACCGTCTCGGGGCGCTGCTCCGAGGCTCCTACACCATGGAGTACGCGGAGGGACGCGCGCCGAGCGGCTTCCCTCTGCGCCAACGCCTTCGCAGCATGCACATCAGCGAGATTTACTGCGGCGAGAACGGCGCCGTGCGCGCGTACATGGTGTTCGACTTCGACGACGCCTCATCGGACGCCATTCTTCTAGGCATCCACGAAGCGCCGTGGAGGCGTGGCTTCCAGGCCGACGGGGACGAGGCGCTCGTCGCCGACGGGTTCTGGAAACCGTCCCAGGGACGGCTCTGCCTCAGGGCGTGCCGCACCGTGCGCTCGACGGTGCGCGAGAGCGACTGCGGCATCCGGATCCACTTCTGGTTCCCGGCCGTGTGGTCGATCCAGCAACGGAGCTTCGTAGCCGGGATGATCCGGAACACGAGGAGCGACGACGACGGCGACACGAACAAAATGTCCGGCGCGATATCGGTGTCAAGAACTGGCTTCAGGGGCGATCTCTCCGACATCAAGTACCATTACACCAGAGTGGAGGACGCCAAGAACTACTACCACTCCAACCCAGAGCTGAGCAAGGAGAGGAACGGCAGGTTTCCGGGGAACTACTCCTACCGGGACTTCGCGTTCAGTTTGTACATCACGACACACGGCGGATACGGGTACGCCTCGCCGGTCACGCTCGGTTCCGCCATGGTTGACGGTGGCACGCTGACGGCCGACGACGCGTTCTCTCGCCACGCTGTGGCAGAGATGATCAAGCAGAGGCTCCTGAGTGTCAGCTACGAATTCGATATCCACCTCTATCGTCGCGTGAATTCATCCAGGGCGTGGAATGTGTCGCGTGTGCCTGATCGGTGGCGCGTCTCGGCGGAAGGCGTTTATGATACCAAGTCAGGTACCCTGTGCATGGTAGGTTGCCGAGTGATCAACAGTTCGTCGGACTGTCAGATCCTAGTGACCGTGCAACTCCCTGCGCTGGGCGGCGAGGACGGCACTGGGTCAATCAGCAGCCTGAGGAAGAAGAGTGACACCCTCTTCTTCGAGACGCTTGGTTTTGCTGCGTATGGTGCGCAGCCCGCCATAGAGGCGGCCCAGGCGATCTCGAGGGTGGACACGGAGCGCATCATGCTGGTGACCTCCATGACGCTGTCCTGCGTCTTCCTCGTCCTGCAGCTGCGCCACGCCAGGAAGAACCCCGACGCGCTCCCGGCCACGTCGATCACCATGCTCGCCGTCCTGGCCCTGGGTTACATGATCCCTCTCGTGGTCAACTACGAGGCCATGTTCGTGGACGACGGCGGCAGCAGAAACAGGCACTTCATCGAGCTGGCGAGGGGCGGCCGCCGGTGGCTCGAGCTGAACGAGTTCGTGCTGAGGCTCAGCACCATGGTGGCGTTCGTGCTGCAGCTGCGCCTCCTGCTTCTCGCGTTGTCCGCGAGATCAACGGCCGGAGCGAGCGGCGGCGGGGACGACCGGTGGGCAGCCGAGCGGAGCACGCTCTGGATATGCCTGCCCCTATACATCGCCGGAGCCATCCTGATCTGGATCCCCCACATCGGTGACGGGCACGATCATCAGCCGTTGGCCAGATGA
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| Protein seq | MARPWCPDDAYACLSLLLLLLLPAAMATSYSSLCSFPAEAADLVVTAGEHQSIADRLNLPLPSDGYFSGGDKLLFASDDHRLPRSFSFFTRRAARTTDPAITHLVATVTLSGYRFFGGRSWRTNVSAHSVSFDLEGYYSNDSASAALCMVGSGSRARDDGLGVVIIPDVALRLRLPRPATLTRPFVTGRLEGPDFGAVTLVAYAEGDYKYGEAASCPTPPGAVRSESKVFDGNFTCDRLGALLRGSYTMEYAEGRAPSGFPLRQRLRSMHISEIYCGENGAVRAYMVFDFDDASSDAILLGIHEAPWRRGFQADGDEALVADGFWKPSQGRLCLRACRTVRSTVRESDCGIRIHFWFPAVWSIQQRSFVAGMIRNTRSDDDGDTNKMSGAISVSRTGFRGDLSDIKYHYTRVEDAKNYYHSNPELSKERNGRFPGNYSYRDFAFSLYITTHGGYGYASPVTLGSAMVDGGTLTADDAFSRHAVAEMIKQRLLSVSYEFDIHLYRRVNSSRAWNVSRVPDRWRVSAEGVYDTKSGTLCMVGCRVINSSSDCQILVTVQLPALGGEDGTGSISSLRKKSDTLFFETLGFAAYGAQPAIEAAQAISRVDTERIMLVTSMTLSCVFLVLQLRHARKNPDALPATSITMLAVLALGYMIPLVVNYEAMFVDDGGSRNRHFIELARGGRRWLELNEFVLRLSTMVAFVLQLRLLLLALSARSTAGASGGGDDRWAAERSTLWICLPLYIAGAILIWIPHIGDGHDHQPLAR |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g48610 | LOC_Os01g48610.1 | Chr01 | 27868718 | 27871847 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCGCGGCCGTGGTGCCCCGACGACGCTTACGCCTGCCTCTCCCTCCTCCTCCTGCTCCTCCTTCCTGCAGCCATGGCCACGTCGTACTCCTCTCTCTGCAGCTTCCCCGCCGAGGCCGCCGACCTCGTCGTCACCGCCGGAGAACACCAGTCCATCGCGGACCGGCTCAATCTTCCCTTGCCCTCCGACGGTTACTTCTCCGGCGGCGACAAGCTCCTCTTCGCCTCCGACGACCACCGCCTCCCACGTTCCTTCTCCTTCTTCACTCGCCGCGCGGCCCGCACCACCGACCCCGCCATCACCCACCTCGTCGCCACGGTCACCCTCTCCGGCTACCGCTTCTTCGGCGGGCGCTCGTGGCGCACCAACGTTAGCGCCCACTCCGTGTCGTTCGACCTCGAAGGTTACTACTCCAACGACTCTGCCTCGGCGGCGCTCTGCATGGTCGGGTCAGGCTCCCGCGCAAGAGACGACGGCTTGGGTGTCGTCATCATCCCGGACGTCGCCCTCCGCCTCCGGCTGCCGCGCCCCGCCACCCTCACGCGGCCCTTCGTCACCGGCCGCCTCGAGGGCCCGGACTTCGGCGCCGTCACCCTCGTTGCGTACGCCGAGGGTGACTACAAGTACGGTGAGGCCGCCTCCTGCCCGACGCCGCCCGGCGCCGTGCGGTCCGAGAGCAAGGTGTTCGACGGAAACTTCACGTGCGACCGTCTCGGGGCGCTGCTCCGAGGCTCCTACACCATGGAGTACGCGGAGGGACGCGCGCCGAGCGGCTTCCCTCTGCGCCAACGCCTTCGCAGCATGCACATCAGCGAGATTTACTGCGGCGAGAACGGCGCCGTGCGCGCGTACATGGTGTTCGACTTCGACGACGCCTCATCGGACGCCATTCTTCTAGGCATCCACGAAGCGCCGTGGAGGCGTGGCTTCCAGGCCGACGGGGACGAGGCGCTCGTCGCCGACGGGTTCTGGAAACCGTCCCAGGGACGGCTCTGCCTCAGGGCGTGCCGCACCGTGCGCTCGACGGTGCGCGAGAGCGACTGCGGCATCCGGATCCACTTCTGGTTCCCGGCCGTGTGGTCGATCCAGCAACGGAGCTTCGTAGCCGGGATGATCCGGAACACGAGGAGCGACGACGACGGCGACACGAACAAAATGTCCGGCGCGATATCGGTGTCAAGAACTGGCTTCAGGGGCGATCTCTCCGACATCAAGTACCATTACACCAGAGTGGAGGACGCCAAGAACTACTACCACTCCAACCCAGAGCTGAGCAAGGAGAGGAACGGCAGGTTTCCGGGGAACTACTCCTACCGGGACTTCGCGTTCAGTTTGTACATCACGACACACGGCGGATACGGGTACGCCTCGCCGGTCACGCTCGGTTCCGCCATGGTTGACGGTGGCACGCTGACGGCCGACGACGCGTTCTCTCGCCACGCTGTGGCAGAGATGATCAAGCAGAGGCTCCTGAGTGTCAGCTACGAATTCGATATCCACCTCTATCGTCGCGTGAATTCATCCAGGGCGTGGAATGTGTCGCGTGTGCCTGATCGGTGGCGCGTCTCGGCGGAAGGCGTTTATGATACCAAGTCAGGTACCCTGTGCATGGTAGGTTGCCGAGTGATCAACAGTTCGTCGGACTGTCAGATCCTAGTGACCGTGCAACTCCCTGCGCTGGGCGGCGAGGACGGCACTGGGTCAATCAGCAGCCTGAGGAAGAAGAGTGACACCCTCTTCTTCGAGACGCTTGGTTTTGCTGCGTATGGTGCGCAGCCCGCCATAGAGGCGGCCCAGGCGATCTCGAGGGTGGACACGGAGCGCATCATGCTGGTGACCTCCATGACGCTGTCCTGCGTCTTCCTCGTCCTGCAGCTGCGCCACGCCAGGAAGAACCCCGACGCGCTCCCGGCCACGTCGATCACCATGCTCGCCGTCCTGGCCCTGGGTTACATGATCCCTCTCGTGGTCAACTACGAGGCCATGTTCGTGGACGACGGCGGCAGCAGAAACAGGCACTTCATCGAGCTGGCGAGGGGCGGCCGCCGGTGGCTCGAGCTGAACGAGTTCGTGCTGAGGCTCAGCACCATGGTGGCGTTCGTGCTGCAGCTGCGCCTCCTGCTTCTCGCGTTGTCCGCGAGATCAACGGCCGGAGCGAGCGGCGGCGGGGACGACCGGTGGGCAGCCGAGCGGAGCACGCTCTGGATATGCCTGCCCCTATACATCGCCGGAGCCATCCTGATCTGGATCCCCCACATCGGTGACGGGCACGATCATCAGCCGTTGGCCAGATGA
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| Protein seq | MARPWCPDDAYACLSLLLLLLLPAAMATSYSSLCSFPAEAADLVVTAGEHQSIADRLNLPLPSDGYFSGGDKLLFASDDHRLPRSFSFFTRRAARTTDPAITHLVATVTLSGYRFFGGRSWRTNVSAHSVSFDLEGYYSNDSASAALCMVGSGSRARDDGLGVVIIPDVALRLRLPRPATLTRPFVTGRLEGPDFGAVTLVAYAEGDYKYGEAASCPTPPGAVRSESKVFDGNFTCDRLGALLRGSYTMEYAEGRAPSGFPLRQRLRSMHISEIYCGENGAVRAYMVFDFDDASSDAILLGIHEAPWRRGFQADGDEALVADGFWKPSQGRLCLRACRTVRSTVRESDCGIRIHFWFPAVWSIQQRSFVAGMIRNTRSDDDGDTNKMSGAISVSRTGFRGDLSDIKYHYTRVEDAKNYYHSNPELSKERNGRFPGNYSYRDFAFSLYITTHGGYGYASPVTLGSAMVDGGTLTADDAFSRHAVAEMIKQRLLSVSYEFDIHLYRRVNSSRAWNVSRVPDRWRVSAEGVYDTKSGTLCMVGCRVINSSSDCQILVTVQLPALGGEDGTGSISSLRKKSDTLFFETLGFAAYGAQPAIEAAQAISRVDTERIMLVTSMTLSCVFLVLQLRHARKNPDALPATSITMLAVLALGYMIPLVVNYEAMFVDDGGSRNRHFIELARGGRRWLELNEFVLRLSTMVAFVLQLRLLLLALSARSTAGASGGGDDRWAAERSTLWICLPLYIAGAILIWIPHIGDGHDHQPLAR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.105322 | 0.161226 | 0.048913 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0677900 | RBH | 0.158530 | 0.243999 | 0.193411 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g48370 | SBH | 2.087881 | 0.922125 | 2.443221 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0677900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0029020 | SBH | 0.790318 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0028570 | RBH | 0.042951 | 0.359549 | 0.106668 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0029000 | SBH | 3.418253 | 0.0 | 0.229546 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0028190 | RBH | 0.023915 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0027920 | RBH | 0.0 | 0.604006 | 2.981863 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0463700 | RBH | 0.7588405 | 8.0848805 | 0.051146 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0027660 | RBH | 0.032349 | 0.053627 | 0.122797 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0452700 | RBH | 1.09554 | 13.7683525 | 0.0257505 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0027950 | RBH | 0.110058 | 0.040625 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0027820 | RBH | 0.0 | 3.023439 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0028120 | RBH | 1.575212 | 2.111091 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0028260 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0028010 | RBH | 0.161534 | 0.944716 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G028480 | RBH | 0.0 | 0.297369 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0028150 | RBH | 0.0 | 9.200320 | 0.524676 |
