Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g48390 | OGI:01084240 | 15/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:27733409-27739844 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GTTTGGGCTCCATTTCCTCTCTGCTCATCTCCTCCTCCGTTGCCCCAACCACCGGGTGAGCAGAGCAGCCTTCTCTTCTCTTCTTCTCTCGATCGAATCCTCCTTTTCGGTTTCTTGATTCGAATCGCGTGCGGTGTAAGCTAGATAGGCAGTGGTGGCCAATCAGGCAGAGAGAAAAAGTAGCTAAAGCTGTCTCCTTCCTTGCTTTGGGGCGATGCAAGGTTTCTCTATTTGTCGGCGTCCCTGAGCTTTTTGTCTGCTGTCACCTGCATGCAGGAGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGGTAGTGAGGTCGCCGCCGCGGAGGAAGAGGCGCAATGGCTGTTGCTGCTGCTGCTGCTCGCGCCTGATCAGACCATGCACTCCAGGCTGCTCAAGAGGCTCGCGAAGAGGATCATGTGACGTGGAGCGAGCCGCAATGTGGAAGATGGTGGACGCGCTGCTGCGTTGCTCCGCGCTCGTCGCGCTGGTTCTTCATTTCGTCGTCAATGGCTGCTCGGCGGTCAACACTGAAGGTTAGCGGCGGCGGCGGCGGTGGCGTCTCGCCGGTGTTGTGGGCTGCGTTCATTATTAGGTCTGTGGGTGATTGATTGGGAGCTCTTCTTGGTTGCTTGTGGTTGCAGGGTCGGCGCTGCTCAAGTTTCAGTCGAGGGTGGAGGAGGATCCGCATGGCGCCATGGCAGGTTGGAGCGAGCGGGATGGCGATCCTTGCAGTTGGAACGGCGTCCGCTGCGTGGATGGCAGGGTGGTGATTCTGTGAGTTCATTGCCCTTCCTTTTTTATTCTTCTGAATGTGCAGTGATTCTGATTGGAAATGCAGTTTACCCATTCGATCAAGGATCATTGTTGCAAAATGTAGCAGGTTTTCTCTCTTTGATGATCCTCCGTTTGACTAAAACCATTCTGTTGAAGAGTTGCGTTGATTTATTGTTAAAATGGACGTTCCTTCCCCACTACTTTTCTCCTCTGATCTATGTGCGGTTTGACTTGAGAATACATGTTAGAAAATGCAGCAATGCTTCAGTTGAATTTCTGGCAACACAAGCATCTATCAACTTTATAGCCCAGAGAAGTTAGATGTGCAATGATTGACTTGTTGTATTTGGTAACAGAGCCTCCTTGGCTCCTTTGGACTGTGGGATTTCTCCGGATTCTTGTGAAAATCCTTTAGATTCGTGCAAAATGGTCCTGCGTTCTAAAGGAGGCCTTGGTGCAATCAGCTCCTCTTCCAGCCAAACAGTCAATACAAAGCATCATACACAATATTAATTCCGTCCCATTTTGATTTGAATTCTTATTTCTTTGATACATATACAGTATTCAGAATGTCCATAAAATGTGCTGTAGAAATTAATTTTCCCTTTAGAAGCCTGTATGGAAGTTTAAAACATAATGTTGATATCATTATTTGGTTTATTTAAATGGTTTCTTGACTCAGCCAATGTGAACAAGTGGCCAGATGGTACATTCAATTCTGTGACAGGGAGATGTTGACTAATAAAGTGAGATTATCGACTAAAACAATTTAGTTGATTCTTTTAAATTGTAATTATATTGGAGGCCCAAAATAGAGGCTAACATTGGTTAGCTTGATACTTCAGCAGAAGGTCAAGTATAATCACCATCAACTGAACGTTGTGATCTGCCTAGATAAGACTGCTTAGTAGGGCCATATGTTCATTGAACATCCTTATGTGTCAGCGCTCATATCTAGAAAGCTTTTCTTAGGCAGCACATTAAGAAAGCCAAACTAATGCTGTTTGGCATGCTTCACGCTTATATACTATTCAATAGGAAAACTGACATTTCCATTCGTAGTTCTAGATCCCTAACATATTAGTCTAGCAAATAAAAGGTTTGTTCAATACTCTACATGTACTTCAACCAAGCACAATAGCAGCCCTTTTTCTTTCCTGATTACAAGGTAGGCAGACACACACGGACATTGCCACTCACACCACACGCAGAAATGCACTATTGTGTGCGCTTTGAACTCTTTCGATGTCAAGATTTGCTATCAAATGCCTCAGGACGTGTGACAGGTTGAGTTTCATACACCAATCATCTCATTCAGAAGTTTAAGTTACTAGGAAAAGAGACATCATTTTCTGCTCATAGAGCTTTGGAGTAGTCCCTTCAGTGCTACTTAATATTGATATTTTTACATGAAAACACCTTAAGGTGATTCTCCGACTCACTAGGTTAATAATTTTTTCTTCTCAAGATGATCTATTACAGAAAAACTCATGTTCAGATTCTTGTGTTTCACTATATAAGATTCATTTATAATTGCCGCAGTGTTTCTACATATTTTGAGTGGATAATGGTTGCTTTATCATCTTAAGAATTGTACTTACTATGAACTCTCTTTCTGTAGGAATCTAAAGGATCTCTCACTAAGAGGTACCTTGGGTCCAGAACTAGGAAGTCTTAGTCATCTGAGGGCTCTGTAAGTTATCTTGACTTTGCTTTAAAGAATATACATTGGACATCTTTTGAATTGGATTTCTTTAAGATCTAGTAACGAGAAATTACTATAGATAAATATATTAATTCTTTATCGGTTGATGCTTGACTAGCTTATTCAGTTTGTCTTCCAGGAACCAGGTGTCTAAATAAGTCAATTACCGTCAGTAAGGACATCTGAAGCATATGTATCCAATTAAATGAATATTGGTTTCAATAGGCCATAATCAAATGGTGTAGTTCATATCAACTAAACTCCGTGCTAAATAAAAATGAGACTAAAATGCCACATGAATACATTGTGCATTTGTGTGAGTAACTGAGGAGTTTACACAGTAGCATAAGATCTTGGCTAATCTTTTGATGGGGCATCCATTACTTGAATTACTAGAGCTAATGAGTTGTAACACTGTAATCTTACTCCTGAATGTGATTTGAGTGTTTTCTACAACATTTTAATTCAATACCTGGCTCACTTGCAGTGTACTCTCCAACAACTTGTTCGATGGACCAATACCGAAGGAAATGAGTGATCTTGCAATGCTGGAAATACTGGATTTAAGCAATAACAATTTGACTGGTGAAGTTCCGCAGGAGATAGCAGAAATGCAATCAATTAAGCACTTGTAGGTCGTCTGACTGATTAACTTTGCCAAAATTTGACCAACATCAAGTAATATAGCCATGATATATTTTCTACTGCTCTGCAGGTTGCTTTCCAACAATAACTTTCAATGGCCTCTCATCCAAAATTCCTACAGGAATTTTGATCAGGAAATTGATTTTGACGTCTATGATGAGAGGGGCGATGTGTATCAAAGATCTGAGAATGGGTAAGAAGAATTAGATTGATATACATTCTGGTCAATACCAGTTTTTTATTTTTATAAAACAAATTATCAGTGCGTGTTGATGGTAACAGTTGTGAATGTGAACCATTGTAGATTCGAGTCTGATTCTTCATCAGAAGAGAACACAAAAGACAATAACAATCTTTCTGGTAATTTAACCTGCTCTTATCTTTTTCAAGTTTGTTCATAGAACCCTGTATACATTAGCTAGTACATAACATACCTTCATCTTTCGACCAGCTCATCTTTCTTCACAATTTGCTGCAAGAAATCCAACTGTACAACTTAGCCGGCGCAGACTATTGGAGGATACCAATCTTGCTGCAGCTTCAGCAAATGCTCCTGTTCCAGCTGTTGCTTCTGTTCCTTCTACTGGAACTGGATCATTTTCAGCATTTAAGGAAATCAAGGTGCCTCCACCACTAAGTCCTCCAAGTAGTCCACCCATGTCCAGTGGTCCTCCACAAAGATCTAAGAGATGGTTGTATGCCATTGTGATTTCATCAATCGCTCTGCTGTTTATCGGCATAGCATGCATGTTTTTGCTATGCCGCAACAAATCAGTGGCGACAATAGGTCCATGGAAGACTGGGCTCAGTGGACAGCTGCAGAAGGCATTTGTGACAGGTAAATATTTTATTTCTTCTCTGATCTGTCTGGATAAAAATGTGCATAATCATCCTGTTATTTTGTTTATTATGGTCAAATATGAACTTCAGAGCATTTTCTATCATATGCTTTCTACTGTTGTTTTACTTTTCTTCAGATATACCTAATTTTTAATCATTTATTTCTAAAGGATAACATGGATTAGCTAAATTAAATAATTGGGATGCAGAACTCATTAATTTTGTAAAATTTTCAACGTCAGTTTATATTTGAACAAATGCAACACCTGTTTTTGTGGGCCATAGATATTTATCTCCTTTACAAATAAAAGTATGTGCAAGGCAGAAATAATATCAAGCAATTGTTAATAGGAGATATAAGATATATAAAAATGGTTCAAGATGAGATTATTTGATCATTAATATTTCTGCAAAGTTTAGACTTTAGAGGGACAGATATTTAGCTTCATTGAGCTCTCCCTTTTCAAAGATCGTCAAATATCCAGTTGAATTGCCTCTTATCATTTGTTGCAAATTGTGGTGCCTTACTGTACTTCAGGAGTACCAAAGTTGCAGCGCTCAGAGCTGGAAGGTGCTTGTGAGGACTTCAGTAACATTGTCGCAAGCTATCCACACTACACTGTATATAAGGGAACCTTATCAAGTGGCGTTGAGATAGCTGTTGTATCAACTGTTATTGCGACTAACAAAGATTGGTCGAAGCATTCCGAAGGGAGATTCAGAAAAAAGGTAATATAGTGTTATTTATTGTAAGGATAAAAGCACCCTGCTACTAAAGTTTGTAATGTTGGTCTAGTTTACGAATAAAAGGTAGTTTGGAAAAAGGTTGTTTCTTCTAACTTATTTTTCTGAACACATAGATAGATTTGCTCTCACGAATTAATCACAAGAACTTCATCAACCTGCTTGGGTACTGTGAGGAGGAGAATCCTTTTATGAGGATGATGGTGTTAGAATATGCACCCAATGGAACACTCTATGAGCATCTCCATGGTAAAAGCCTGTTAAATGCTGATTCCACTGCTAAAATGTTTGTTCTTTATGCCAAATTAAATTGGTTTTATTTCCTTTTTGCAGTTGAGGGATTCGATCATATTGATTGGAATGGTAGGATGAGAGTAATTATGGGGGTAGCATACTGCATCCAACACATGCATGAGCTGAACCCTTCTATCACACATCCTGACTTACATTCAAGTGCCATATTGTTGTCTGAGGATGGAGCTGCAAAGGTACAAATATGCTTATGGAAATTTCAAATTGTATTTGTTCTAGTTTGTGGAGATCTTCACAGGATTGTCCAAAATTTCAGTAATATGAAAACAAAAAGGAAATAGTGTAAGATCAGAATTTCAGCTTCTAAACCATTTTTCTGGACATTATACCTTCAATTTAGAGTCACATTGTTTGGAAAAGCAAACTGGATAAAATGTTTGTCTACATCACAATTGAGCAATATGAAGTACTCCCTAGTTCGTTTGCACAAACACTTTAGTTGTAATATCAGACTACATGTTTATGCTTTCCTCTAAACCGAGTCCTTTTCGCAGGTAGCAGACATGAGTGTTTGGCAAGAAGTGATTTCTAAAGGAAAAATGCCCAAGAACGATGACATTGTTGATCACCATGAGCCTGTGTCTGCCGATCCAGCTGGGAACGTGTGCAGTTTTGGTCTACTCATGCTGGAAATCATCTCAGGAAGGCCTCCATATTCTGAACACAAGGGCTCCCTTGCGAACTTGGTAAGGATGACAATTAATAAATCGAGTGTAGTTACTAAAGTCGTTGCAACTTCCACAAAATGGGATCTTGAAGCAAATGTTGCTTCTTCTTTTTTTCCGTCTGGTGACAGGCTATGGAGTGCATTAAAGATGACCGGAATATATCATGTTTGCTTGATCCTACCTTGAAGACTCACAAAGAAAACGAGCTAGAAATCATCTGTGAGTTAATCCAGGAGTGCATCCAAAGCGACCCGAAGAAGAGACCAGGCATGCGAGAGGTCACCACTAGACTGAGAGAAGTTCTAGCAATCTCACCGGAGGCAGCAACGCCGAGACTGTCTCCACTTTGGTGGGCAGAGCTTGAGATCCTTTCGGTTGAAGCAACCTAGGAGAAAGAAAGTGTCAATATGATGTGGTTCTTACAGCAACTCTGAGTTTCTGTGCGCAAACTTGTACATCCCCGTTTGTGCGTTTCTGCATTTCTGGTGAGTTCGCTGTCCGCATTGCGGTACTTTCTCCCCCTCCAGTAAATTTCTGGTGAGTTTGTTGTTTTCTTTTTTTTTTCTCTGTATACTAAACATACATGGTGTGAAAATAGAATGATTCAGGTTATCCTAGAGGTGAATGTAACTATGTAAGCAGGAAATGTGTGTGATTGTGTAATGTACCATGGGGTTTAAGGAAATATTCTTTAATTTTTTTGAAGAAAGAAAGAACAATCACTATCGACTCTGAGTGGCA
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| CDS seq | ATGTGGAAGATGGTGGACGCGCTGCTGCGTTGCTCCGCGCTCGTCGCGCTGGTTCTTCATTTCGTCGTCAATGGCTGCTCGGCGGTCAACACTGAAGGGTCGGCGCTGCTCAAGTTTCAGTCGAGGGTGGAGGAGGATCCGCATGGCGCCATGGCAGGTTGGAGCGAGCGGGATGGCGATCCTTGCAGTTGGAACGGCGTCCGCTGCGTGGATGGCAGGGTGGTGATTCTGAATCTAAAGGATCTCTCACTAAGAGGTACCTTGGGTCCAGAACTAGGAAGTCTTAGTCATCTGAGGGCTCTTGTACTCTCCAACAACTTGTTCGATGGACCAATACCGAAGGAAATGAGTGATCTTGCAATGCTGGAAATACTGGATTTAAGCAATAACAATTTGACTGGTGAAGTTCCGCAGGAGATAGCAGAAATGCAATCAATTAAGCACTTGTTGCTTTCCAACAATAACTTTCAATGGCCTCTCATCCAAAATTCCTACAGGAATTTTGATCAGGAAATTGATTTTGACGTCTATGATGAGAGGGGCGATGTGTATCAAAGATCTGAGAATGGATTCGAGTCTGATTCTTCATCAGAAGAGAACACAAAAGACAATAACAATCTTTCTGCTCATCTTTCTTCACAATTTGCTGCAAGAAATCCAACTGTACAACTTAGCCGGCGCAGACTATTGGAGGATACCAATCTTGCTGCAGCTTCAGCAAATGCTCCTGTTCCAGCTGTTGCTTCTGTTCCTTCTACTGGAACTGGATCATTTTCAGCATTTAAGGAAATCAAGGTGCCTCCACCACTAAGTCCTCCAAGTAGTCCACCCATGTCCAGTGGTCCTCCACAAAGATCTAAGAGATGGTTGTATGCCATTGTGATTTCATCAATCGCTCTGCTGTTTATCGGCATAGCATGCATGTTTTTGCTATGCCGCAACAAATCAGTGGCGACAATAGGTCCATGGAAGACTGGGCTCAGTGGACAGCTGCAGAAGGCATTTGTGACAGGAGTACCAAAGTTGCAGCGCTCAGAGCTGGAAGGTGCTTGTGAGGACTTCAGTAACATTGTCGCAAGCTATCCACACTACACTGTATATAAGGGAACCTTATCAAGTGGCGTTGAGATAGCTGTTGTATCAACTGTTATTGCGACTAACAAAGATTGGTCGAAGCATTCCGAAGGGAGATTCAGAAAAAAGATAGATTTGCTCTCACGAATTAATCACAAGAACTTCATCAACCTGCTTGGGTACTGTGAGGAGGAGAATCCTTTTATGAGGATGATGGTGTTAGAATATGCACCCAATGGAACACTCTATGAGCATCTCCATGTTGAGGGATTCGATCATATTGATTGGAATGGTAGGATGAGAGTAATTATGGGGGTAGCATACTGCATCCAACACATGCATGAGCTGAACCCTTCTATCACACATCCTGACTTACATTCAAGTGCCATATTGTTGTCTGAGGATGGAGCTGCAAAGGTAGCAGACATGAGTGTTTGGCAAGAAGTGATTTCTAAAGGAAAAATGCCCAAGAACGATGACATTGTTGATCACCATGAGCCTGTGTCTGCCGATCCAGCTGGGAACGTGTGCAGTTTTGGTCTACTCATGCTGGAAATCATCTCAGGAAGGCCTCCATATTCTGAACACAAGGGCTCCCTTGCGAACTTGGCTATGGAGTGCATTAAAGATGACCGGAATATATCATGTTTGCTTGATCCTACCTTGAAGACTCACAAAGAAAACGAGCTAGAAATCATCTGTGAGTTAATCCAGGAGTGCATCCAAAGCGACCCGAAGAAGAGACCAGGCATGCGAGAGGTCACCACTAGACTGAGAGAAGTTCTAGCAATCTCACCGGAGGCAGCAACGCCGAGACTGTCTCCACTTTGGTGGGCAGAGCTTGAGATCCTTTCGGTTGAAGCAACCTAG
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| Protein seq | MWKMVDALLRCSALVALVLHFVVNGCSAVNTEGSALLKFQSRVEEDPHGAMAGWSERDGDPCSWNGVRCVDGRVVILNLKDLSLRGTLGPELGSLSHLRALVLSNNLFDGPIPKEMSDLAMLEILDLSNNNLTGEVPQEIAEMQSIKHLLLSNNNFQWPLIQNSYRNFDQEIDFDVYDERGDVYQRSENGFESDSSSEENTKDNNNLSAHLSSQFAARNPTVQLSRRRLLEDTNLAAASANAPVPAVASVPSTGTGSFSAFKEIKVPPPLSPPSSPPMSSGPPQRSKRWLYAIVISSIALLFIGIACMFLLCRNKSVATIGPWKTGLSGQLQKAFVTGVPKLQRSELEGACEDFSNIVASYPHYTVYKGTLSSGVEIAVVSTVIATNKDWSKHSEGRFRKKIDLLSRINHKNFINLLGYCEEENPFMRMMVLEYAPNGTLYEHLHVEGFDHIDWNGRMRVIMGVAYCIQHMHELNPSITHPDLHSSAILLSEDGAAKVADMSVWQEVISKGKMPKNDDIVDHHEPVSADPAGNVCSFGLLMLEIISGRPPYSEHKGSLANLAMECIKDDRNISCLLDPTLKTHKENELEIICELIQECIQSDPKKRPGMREVTTRLREVLAISPEAATPRLSPLWWAELEILSVEAT |
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| Function | Protein MALE DISCOVERER 1 [UniProtKB/Swiss-Prot:C0LGU7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g48390 | LOC_Os01g48390.1 | Chr01 | 27733409 | 27739844 | + | MSU_osa1r7 | ||
| CDS seq | ATGTGGAAGATGGTGGACGCGCTGCTGCGTTGCTCCGCGCTCGTCGCGCTGGTTCTTCATTTCGTCGTCAATGGCTGCTCGGCGGTCAACACTGAAGGGTCGGCGCTGCTCAAGTTTCAGTCGAGGGTGGAGGAGGATCCGCATGGCGCCATGGCAGGTTGGAGCGAGCGGGATGGCGATCCTTGCAGTTGGAACGGCGTCCGCTGCGTGGATGGCAGGGTGGTGATTCTGAATCTAAAGGATCTCTCACTAAGAGGTACCTTGGGTCCAGAACTAGGAAGTCTTAGTCATCTGAGGGCTCTTGTACTCTCCAACAACTTGTTCGATGGACCAATACCGAAGGAAATGAGTGATCTTGCAATGCTGGAAATACTGGATTTAAGCAATAACAATTTGACTGGTGAAGTTCCGCAGGAGATAGCAGAAATGCAATCAATTAAGCACTTGTTGCTTTCCAACAATAACTTTCAATGGCCTCTCATCCAAAATTCCTACAGGAATTTTGATCAGGAAATTGATTTTGACGTCTATGATGAGAGGGGCGATGTGTATCAAAGATCTGAGAATGGATTCGAGTCTGATTCTTCATCAGAAGAGAACACAAAAGACAATAACAATCTTTCTGCTCATCTTTCTTCACAATTTGCTGCAAGAAATCCAACTGTACAACTTAGCCGGCGCAGACTATTGGAGGATACCAATCTTGCTGCAGCTTCAGCAAATGCTCCTGTTCCAGCTGTTGCTTCTGTTCCTTCTACTGGAACTGGATCATTTTCAGCATTTAAGGAAATCAAGGTGCCTCCACCACTAAGTCCTCCAAGTAGTCCACCCATGTCCAGTGGTCCTCCACAAAGATCTAAGAGATGGTTGTATGCCATTGTGATTTCATCAATCGCTCTGCTGTTTATCGGCATAGCATGCATGTTTTTGCTATGCCGCAACAAATCAGTGGCGACAATAGGTCCATGGAAGACTGGGCTCAGTGGACAGCTGCAGAAGGCATTTGTGACAGGAGTACCAAAGTTGCAGCGCTCAGAGCTGGAAGGTGCTTGTGAGGACTTCAGTAACATTGTCGCAAGCTATCCACACTACACTGTATATAAGGGAACCTTATCAAGTGGCGTTGAGATAGCTGTTGTATCAACTGTTATTGCGACTAACAAAGATTGGTCGAAGCATTCCGAAGGGAGATTCAGAAAAAAGATAGATTTGCTCTCACGAATTAATCACAAGAACTTCATCAACCTGCTTGGGTACTGTGAGGAGGAGAATCCTTTTATGAGGATGATGGTGTTAGAATATGCACCCAATGGAACACTCTATGAGCATCTCCATGTTGAGGGATTCGATCATATTGATTGGAATGGTAGGATGAGAGTAATTATGGGGGTAGCATACTGCATCCAACACATGCATGAGCTGAACCCTTCTATCACACATCCTGACTTACATTCAAGTGCCATATTGTTGTCTGAGGATGGAGCTGCAAAGGTAGCAGACATGAGTGTTTGGCAAGAAGTGATTTCTAAAGGAAAAATGCCCAAGAACGATGACATTGTTGATCACCATGAGCCTGTGTCTGCCGATCCAGCTGGGAACGTGTGCAGTTTTGGTCTACTCATGCTGGAAATCATCTCAGGAAGGCCTCCATATTCTGAACACAAGGGCTCCCTTGCGAACTTGGCTATGGAGTGCATTAAAGATGACCGGAATATATCATGTTTGCTTGATCCTACCTTGAAGACTCACAAAGAAAACGAGCTAGAAATCATCTGTGAGTTAATCCAGGAGTGCATCCAAAGCGACCCGAAGAAGAGACCAGGCATGCGAGAGGTCACCACTAGACTGAGAGAAGTTCTAGCAATCTCACCGGAGGCAGCAACGCCGAGACTGTCTCCACTTTGGTGGGCAGAGCTTGAGATCCTTTCGGTTGAAGCAACCTAG
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| Protein seq | MWKMVDALLRCSALVALVLHFVVNGCSAVNTEGSALLKFQSRVEEDPHGAMAGWSERDGDPCSWNGVRCVDGRVVILNLKDLSLRGTLGPELGSLSHLRALVLSNNLFDGPIPKEMSDLAMLEILDLSNNNLTGEVPQEIAEMQSIKHLLLSNNNFQWPLIQNSYRNFDQEIDFDVYDERGDVYQRSENGFESDSSSEENTKDNNNLSAHLSSQFAARNPTVQLSRRRLLEDTNLAAASANAPVPAVASVPSTGTGSFSAFKEIKVPPPLSPPSSPPMSSGPPQRSKRWLYAIVISSIALLFIGIACMFLLCRNKSVATIGPWKTGLSGQLQKAFVTGVPKLQRSELEGACEDFSNIVASYPHYTVYKGTLSSGVEIAVVSTVIATNKDWSKHSEGRFRKKIDLLSRINHKNFINLLGYCEEENPFMRMMVLEYAPNGTLYEHLHVEGFDHIDWNGRMRVIMGVAYCIQHMHELNPSITHPDLHSSAILLSEDGAAKVADMSVWQEVISKGKMPKNDDIVDHHEPVSADPAGNVCSFGLLMLEIISGRPPYSEHKGSLANLAMECIKDDRNISCLLDPTLKTHKENELEIICELIQECIQSDPKKRPGMREVTTRLREVLAISPEAATPRLSPLWWAELEILSVEAT
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g48390 | LOC_Os01g48390.2 | Chr01 | 27733658 | 27739844 | + | MSU_osa1r7 | ||
| CDS seq | ATGTGGAAGATGGTGGACGCGCTGCTGCGTTGCTCCGCGCTCGTCGCGCTGGTTCTTCATTTCGTCGTCAATGGCTGCTCGGCGGTCAACACTGAAGGGTCGGCGCTGCTCAAGTTTCAGTCGAGGGTGGAGGAGGATCCGCATGGCGCCATGGCAGGTTGGAGCGAGCGGGATGGCGATCCTTGCAGTTGGAACGGCGTCCGCTGCGTGGATGGCAGGGTGGTGATTCTGAATCTAAAGGATCTCTCACTAAGAGGTACCTTGGGTCCAGAACTAGGAAGTCTTAGTCATCTGAGGGCTCTTGTACTCTCCAACAACTTGTTCGATGGACCAATACCGAAGGAAATGAGTGATCTTGCAATGCTGGAAATACTGGATTTAAGCAATAACAATTTGACTGGTGAAGTTCCGCAGGAGATAGCAGAAATGCAATCAATTAAGCACTTGTTGCTTTCCAACAATAACTTTCAATGGCCTCTCATCCAAAATTCCTACAGGAATTTTGATCAGGAAATTGATTTTGACGTCTATGATGAGAGGGGCGATGTGTATCAAAGATCTGAGAATGGATTCGAGTCTGATTCTTCATCAGAAGAGAACACAAAAGACAATAACAATCTTTCTGCTCATCTTTCTTCACAATTTGCTGCAAGAAATCCAACTGTACAACTTAGCCGGCGCAGACTATTGGAGGATACCAATCTTGCTGCAGCTTCAGCAAATGCTCCTGTTCCAGCTGTTGCTTCTGTTCCTTCTACTGGAACTGGATCATTTTCAGCATTTAAGGAAATCAAGGTGCCTCCACCACTAAGTCCTCCAAGTAGTCCACCCATGTCCAGTGGTCCTCCACAAAGATCTAAGAGATGGTTGTATGCCATTGTGATTTCATCAATCGCTCTGCTGTTTATCGGCATAGCATGCATGTTTTTGCTATGCCGCAACAAATCAGTGGCGACAATAGGTCCATGGAAGACTGGGCTCAGTGGACAGCTGCAGAAGGCATTTGTGACAGGAGTACCAAAGTTGCAGCGCTCAGAGCTGGAAGGTGCTTGTGAGGACTTCAGTAACATTGTCGCAAGCTATCCACACTACACTGTATATAAGGGAACCTTATCAAGTGGCGTTGAGATAGCTGTTGTATCAACTGTTATTGCGACTAACAAAGATTGGTCGAAGCATTCCGAAGGGAGATTCAGAAAAAAGATAGATTTGCTCTCACGAATTAATCACAAGAACTTCATCAACCTGCTTGGGTACTGTGAGGAGGAGAATCCTTTTATGAGGATGATGGTGTTAGAATATGCACCCAATGGAACACTCTATGAGCATCTCCATGTTGAGGGATTCGATCATATTGATTGGAATGGTAGGATGAGAGTAATTATGGGGGTAGCATACTGCATCCAACACATGCATGAGCTGAACCCTTCTATCACACATCCTGACTTACATTCAAGTGCCATATTGTTGTCTGAGGATGGAGCTGCAAAGGTAGCAGACATGAGTGTTTGGCAAGAAGTGATTTCTAAAGGAAAAATGCCCAAGAACGATGACATTGTTGATCACCATGAGCCTGTGTCTGCCGATCCAGCTGGGAACGTGTGCAGTTTTGGTCTACTCATGCTGGAAATCATCTCAGGAAGGCCTCCATATTCTGAACACAAGGGCTCCCTTGCGAACTTGGCTATGGAGTGCATTAAAGATGACCGGAATATATCATGTTTGCTTGATCCTACCTTGAAGACTCACAAAGAAAACGAGCTAGAAATCATCTGTGAGTTAATCCAGGAGTGCATCCAAAGCGACCCGAAGAAGAGACCAGGCATGCGAGAGGTCACCACTAGACTGAGAGAAGTTCTAGCAATCTCACCGGAGGCAGCAACGCCGAGACTGTCTCCACTTTGGTGGGCAGAGCTTGAGATCCTTTCGGTTGAAGCAACCTAG
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| Protein seq | MWKMVDALLRCSALVALVLHFVVNGCSAVNTEGSALLKFQSRVEEDPHGAMAGWSERDGDPCSWNGVRCVDGRVVILNLKDLSLRGTLGPELGSLSHLRALVLSNNLFDGPIPKEMSDLAMLEILDLSNNNLTGEVPQEIAEMQSIKHLLLSNNNFQWPLIQNSYRNFDQEIDFDVYDERGDVYQRSENGFESDSSSEENTKDNNNLSAHLSSQFAARNPTVQLSRRRLLEDTNLAAASANAPVPAVASVPSTGTGSFSAFKEIKVPPPLSPPSSPPMSSGPPQRSKRWLYAIVISSIALLFIGIACMFLLCRNKSVATIGPWKTGLSGQLQKAFVTGVPKLQRSELEGACEDFSNIVASYPHYTVYKGTLSSGVEIAVVSTVIATNKDWSKHSEGRFRKKIDLLSRINHKNFINLLGYCEEENPFMRMMVLEYAPNGTLYEHLHVEGFDHIDWNGRMRVIMGVAYCIQHMHELNPSITHPDLHSSAILLSEDGAAKVADMSVWQEVISKGKMPKNDDIVDHHEPVSADPAGNVCSFGLLMLEIISGRPPYSEHKGSLANLAMECIKDDRNISCLLDPTLKTHKENELEIICELIQECIQSDPKKRPGMREVTTRLREVLAISPEAATPRLSPLWWAELEILSVEAT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.614834 | 0.315024 | 1.824334 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0674800 | RBH | 0.811238 | 0.651813 | 10.774468 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g48660 | RBH | 1.329663 | 0.842379 | 0.217333 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0674800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0028880 | RBH | 0.723038 | 53.431423 | 8.743356 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0028420 | RBH | 0.233461 | 4.891382 | 3.790421 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0028850 | RBH | 1.266976 | 41.252071 | 11.471619 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0028040 | RBH | 0.000000 | 0.659881 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0023300 | SBH | 0.352614 | 0.000000 | 0.306255 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0461300 | RBH | 10.1762535 | 19.6620505 | 9.1450315 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0027510 | RBH | 0.093811 | 2.176964 | 1.428822 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0449900 | RBH | 8.635676 | 11.6780125 | 11.697538 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0027810 | RBH | 0.105563 | 0.096551 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0027670 | RBH | 0.181169 | 6.605370 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0027980 | RBH | 2.336105 | 7.505695 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0028110 | RBH | 0.301825 | 1.319327 | 0.922716 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0027860 | RBH | 0.186543 | 13.906193 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G028330 | RBH | 0.242266 | 5.253355 | 3.704741 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0028000 | RBH | 0.000000 | 14.228470 | 8.589832 |
