Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g48060 | OGI:01083750 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:27501506-27507181 | ||||||||
| Gene Symbol | OsARF2, OsETT2, ETT2, ARF3a, DLN16, OsDLN16, OsETTIN2 | ||||||||||
| DNA seq | CGCCCTACACCTTAATTCTGATGTGCCCTGGTGTCACCAATGGATTCTATGTCATGTACCGATGTCGTCCCAGGAGCAAACAAACCCCTCGAACGGTCGCCATACTTGGAATTTGGAAATTAAGGGTTGCTAACATAAGCAAGCCCTCTAAAAGGGCTGTCTTAACGGACAAATTGAAAAATATGCAAGTAGGTCAGGCAACATAAATGCCGATTACAACGGGAGCTTAAAATAGGAGCAACGTTAAGAGGTTCAAAGCTTAGAACTTAGAAGTGCATTACAACAAACTTGACAAGCATCCTTCGTGTATCATCTGCATTTCCCCTGTCATCATCCTGGATGCGGTAGCACAGCCTGTGGAAATGCTGAAGTTGAGGCAACAAGCACGTAGAGGGACGAGATAGCCAGAATGGAAGTTGTGTCCTCAGCACCAGTGAGTATGATACTAATGTTGGTCCCTATTTCTGCAAGCATACTCCCTGGATACAGTAAATGTATCAGATCATCGTATTCACTGCTGAAATATCAACGACCCTGCCAACAACAGGCCTTTGTTCATGGACCTGTAAATAATTCGGTTAGCAAGCAATTTCAGGAAGAAGATGCCAAAAGAACATTTCATTGAGCACTTACCGTGGCACAACTGCTGCCCAATGATTTTGGCATCTGTGGTTTTAAAGACTGGAGCCGAGAATGATAACTGGCATTGCCACAATCCACTTCATCGCCTGCTTGGGCCTTTTCAGTCAATGATATACCAAAGATTTTGCAGCCATTTGTATTAAGACACTTGTTATTTGATTCATGCTCAGCACCACTGACTGGAGAGTGCAGCTTCTCATTTCTCGTACACTCATCTAGCACTTTGCCTGAAATAAGATGAGGCCAGAGTCGTAATGTTTGATCAGTTCTTGTCATATCTTGTGTAGGTCCAATCTTAAAATGTCGGCTATTCTCATTTCTATCCAGGCATCCGTATATGTATTCAAGGCCAGGCATCTTTGAACTAGTTTGTGGAAACATTAAGACAGATGATGGAGAGGATGCTTGCGGCAGAACTGATGTGGTTATCCCATGATGATCACATCCTTGTGGTGCAAGCCATTTAAATGCTGCACCAGGTGCATGGTTGCCATCAGGTTGACGGAAGCCAGAACCTCTTATACAGGCATCGGACAAAGTCCCTCCTCGGTAAGGACGAAACACTTCTTGACCTTGCAAGACCTCTTGGAATCTTTGAGATTCCCCAAAGCCTGAGCAATGGTAGGAAAACCCAGGGTTTCCACTTGGAGTTTTCACCCCAAGTCTCGGAACCCCTAAGATATTGTTACTCATGTTGATAGAGCAACTTCGTTCATCAGTGTACTGAAAATTTCTTGCCTCAGTCGCCTGAGAAGCTGTATTAACAGTACCATCACGAGTTTTTAAACCCAACAATTCTTGACCTTGCAAGACCTTGTGGAATCTGGCAGACTCCGCAAAATCTGAAGAAACACTTCCATCTGCCAAAATGGGAAAAGGAAAAGTGAGTTCAACAGGGAACATGCAGCACAGAAAATGATTCCTTTGACTTGTAAATGGAACCTACTTGGAAGCACAATATCTGGATTAACTTGGGGGAAGCATGATTTCAGCCGTTTTGAATGGGGAGTGGACAGATGAGATCCTGAAACTGATCCACTAAGCTCAATCTCCCAAGGAGATACCCCATTAGGCCGACGGCACTCCACATCATCATCCCATTTCACCTGTCACCATCACAATACAATACTAGAAATCAGGAACATGATAAAGATTTGGAATATAAATGGAGAAAATTTTAACAAAGTAAAGACGATGCCCTGCCCACTATGGCATGTAAAGTATGCCCTTCAACCTCTATATTCTATCCTATAAGCTGATAAGCAGAAGTGCAGGGCGCTATTTTTCAGGGTTCATCATATCAAATGCTTCTAAACTTGTGTGTTCAGAAAAACATAGATATAGAACCTGAAGTACACCAAGAATTTACATATGCGCTGCAAACACGAATTTACATATGCGCTGCAAACACTGAAATCTTGACCAATACTTTCATAAGTTCACAAAAATAAACTTTAAGCTAGTTTATTTCACATAAAAAGGTTAAATGCCTTTGTTTCCGTAATTTACCCTTGTATGAGCCATTAAATCTATTCAAAATTTTGGATTGTACAAACTATAACTTCCCAACAGATAAAAAGCTAAGACATGGAACACAAAATGTTGAATGCTGAATACAGAGAAGCACTCTGCTATTTGAAAGACACGGACCCACTAGGCAGTAAAACATCAAATAAGAGAACTACTGGCATCCATCTGTGCAAAGCAGTATTATATATAAGAGCGCATACCACTAAACATTTCCACTTCGAACCATGCCACATTGGATCTGCCTCTCTGCTTCCAATTATTATTCCAGTACGCCTGAAAAACAAATTCTTTATGAAAAACCAAGCACGAGCTAGAAATATCTTTACCATTGTAATGCCATTTCGCAAAACATGAAATATAACTGTTGGATAATACCTTCTTTCAGAAGCATCCTCACTCTCATATCTCAATTTGAATCGCATTCCAACAGAAAAGGGTTGACTGAAGCTTCTCATAAACTTCCAATATGGTATAATGAACTCAGACTGACTTAACCTGTGAGTACAACTTATTAAAGGCAGGAACTGACATCAAGACATTATCCAACAAGAGAAGCAGACAAAAAGAAAATCTGTAACTCTGAAGACTTTTAACCATATCCACATTAGGACATAGCATGCAGAAGAACAGTCAGAAGTTGCACATTGCAAATGCATGAATATCATTTGAAAGAAAGACCATTATCACTACAATGGAACTGAATTATCCTTCTTTTTTTTATCTGATGTATCTTAGAAATAGCACAAAACATTGTTAAAATTGCTCGATTATTGCAAAATGGTGACAATTAGATACATCCTCTGAAATCTATATTGCTAAACCACACATGAAAGTAAAGCAGTAAACCACACATGACCATTTGAAAACAAGAAAATTAGATACATCCTCTTAAATCATATTGCTGCTTCAATGTGCACTTCCTCAACACTTTCGAGGAACACATGCAATGGCAATGTGGCATCATTTAGTATATCCGAGAAAACAAATATATTCAGCAAATTAAATGTGGTAAAAACAACACAATATTCTACATGGTCGAGATCAGCAAAGTCAGCCAGGAAACTACTATTCACATACCAAAAGGTTGGATTAGAAAAAGCCGGAACTAAACTTTACAATGTTGCAATTCTAATACAAAATTACAAGTCCAGTTCCATGATATAAACAATGAGCATTTGAAAAATGTCAGCATTGGAAATTTTCTGGATGACTGAAAACATGCCACCAACTTATATGATCTGGAGTTTGAACTTGACATGAGGAAACAAGGAATAAATATTAATATTCTCTAGCTCATATGGTATGTATAACTTGTTCTATCACAAGCTATTGCTGTGTCTGTCTGTCCGACATCCTCTTATTATATGGTTGATTATTTGACTGGTTGGAAAAGTACAGTATGTGCAATATTATGTGCATCTGTGACTTGTACTTATTTTTATGATGGTTACTTGTGCAAATAACATCTACAGGTACAGGTATTTAAATATTCAAAAAATCAGGAAAGTACTTTATTACCTGGGATTGTAGTAGATGTGAAAAATACTTTTCACGGCCACAGCATGTGCAACTTCACTAAGACTACTAGTATTTGAGATCTGGTTATGAAGTGCAGGAAAAGGAGATGCATTTTTTAGCTGAGCAGCTCGGCGCACTCCCAATCGAAGCTCTCCATCTTCACCTCTGGAGATCATTACAAAAGAGAAGCTTTAGTACATTTCGAGTTAGTGGTTCATGAGCACATGAGCTATAGGCCTACCTGAGGAATAGCACTGCATCCCCAGATACTAGCTTCTTCTTGTTGATAAACCCGCTCCATCCAGTGGTTAAAAGGTGCCTCCGTGGTTGGCCTGTAACAATTAGAGGCAGACCTATGAGATATTCATGGACCATAATTTTCTCAAGACTCCTCCAAATTGCAATTAGCTTAACTATTAGAGATTATGTCGCAATAGCTGTAGAAATAGGTAGTCTATGCATAAATTAAAATAATTTATTGAAAACACTCCCAGAGTAAGTGAGCAGAGCCTAATGAGAAAAAATAGCATAGTTTGCTCATTTTTATCTCATCCAGCCAGCCAAGTTACAGTTTGGTTTGCTTGTTTCGTCTAAACTGGACAGCCATCTCGCTTCCAATACCTAGACATGATAGATGTATCTAAAAAGGAGACCTGGATAATCTTACTAAAAGAAAAAACATATATATACTAATGCGTTATTCGGTGAACAAAGTACAGTAGTTCAACCTAAACAGCCTGTGATGTACTATAGGAAGATGTAGGACTGTACAGCCCGTAGGTTACTAGGTTCTCTCACGCATTAAGAAAATTAATCCCATGTTCCCAGGGAGAAGCCTAACAACCAAGCTGTATGACATATATATGGTAGTTAGTGATAGTACGGCTGATATCCCAGTCACCAAGATAGGCTAAACCGGCGAATCACCTCGATAGATATGTCTGAACCTCCATTCCGTGCCGTGCAGATCCTTTGCCACGAGCTCCTGGAATGGCCTCTGCAGGCTGTAGTCCTGCAGGCGCCAAGCTGAACAGAGTCACCACACAAGCAATCAAACAGATCACGGTGAGGTAGCTTGTCCCAATCGATATCGTCCCGTACCAGCGGCGGGAAGCAGTCCTCGGCGGCGCGGCGAGGCACGGAGAAGCCGCCGTGCGTGCTGGTGTCGGAGGCCGTGAGCGTCTTGCAGAACATGTGGGGAATCCGGGCCGGCCGCTTCACGGCGTCCTCGCCCTCGCCGTCGCAGGCCGCGCCGTCCTCTCCCTCCCGCATCCGCCTCTCCACTTCCTGAAAAAACCACCCAGAAATAATGTTCGTTTGAGCTACTAGCACTGACCGAATGTCAAAGATATTCATCCCATTTTTGGATCAGCACGCACGCAAACGCACCTCGTTGTCGGCGACCAACGAGACCTGCGCGTACACCTCGTCCGTCGCGGCGTCCGCCTGCAAACAGCACAACGGGAGGAGCAGACCCTCTCTCTCAATCAATACCTCGAACACATTGCGCTCGCGCGAGAGCAGCAAGCGGCGAGCGCACTCACGTGGAGGCTGACGTCGACGACGCGGCAGAACACGTGCGGCGGCACCGCGGCGCCGGGGCCGGAGCCGGGCGCGGCCCCGAGGTGCTCGAGGTGGCCCTGCGGCAGGTACACGACGGCGCTGCCCTTCCGCGGCAGCGGCGCCACGGGGCCAGCGCAGGCGTGCCACAGCTCCAGGCACACCGCGCCCCCCGCCCTCGCCTCCGCAGGCGCCGTGACGGTGCCGGTGGCGCCGCCCTCCTCCTCGTCTTCCTCCTCCTCCACGGTGTTGAGGTCGATGCCCACCATAGCCGCAACCCCCCACCGGCAGCTCGCCGCGCCGCCGCCGCGCTTGCTTCCAACGCGGTCGAAAGAGGAGAGACGGGGAGGGAAGCGAGGAGGGGAGGCGATCGAGGTCCCTCGCTTGGGTTTAATGGAGCGGAGAGCGGAGTGGGTGAGGAGAGGC
More
|
||||||||||
| CDS seq | ATGGTGGGCATCGACCTCAACACCGTGGAGGAGGAGGAAGACGAGGAGGAGGGCGGCGCCACCGGCACCGTCACGGCGCCTGCGGAGGCGAGGGCGGGGGGCGCGGTGTGCCTGGAGCTGTGGCACGCCTGCGCTGGCCCCGTGGCGCCGCTGCCGCGGAAGGGCAGCGCCGTCGTGTACCTGCCGCAGGGCCACCTCGAGCACCTCGGGGCCGCGCCCGGCTCCGGCCCCGGCGCCGCGGTGCCGCCGCACGTGTTCTGCCGCGTCGTCGACGTCAGCCTCCACGCGGACGCCGCGACGGACGAGGTGTACGCGCAGGTCTCGTTGGTCGCCGACAACGAGGAAGTGGAGAGGCGGATGCGGGAGGGAGAGGACGGCGCGGCCTGCGACGGCGAGGGCGAGGACGCCGTGAAGCGGCCGGCCCGGATTCCCCACATGTTCTGCAAGACGCTCACGGCCTCCGACACCAGCACGCACGGCGGCTTCTCCGTGCCTCGCCGCGCCGCCGAGGACTGCTTCCCGCCGCTGGACTACAGCCTGCAGAGGCCATTCCAGGAGCTCGTGGCAAAGGATCTGCACGGCACGGAATGGAGGTTCAGACATATCTATCGAGGCCAACCACGGAGGCACCTTTTAACCACTGGATGGAGCGGGTTTATCAACAAGAAGAAGCTAGTATCTGGGGATGCAGTGCTATTCCTCAGAGGTGAAGATGGAGAGCTTCGATTGGGAGTGCGCCGAGCTGCTCAGCTAAAAAATGCATCTCCTTTTCCTGCACTTCATAACCAGATCTCAAATACTAGTAGTCTTAGTGAAGTTGCACATGCTGTGGCCGTGAAAAGTATTTTTCACATCTACTACAATCCCAGTTGTACTCACAGGTTAAGTCAGTCTGAGTTCATTATACCATATTGGAAGTTTATGAGAAGCTTCAGTCAACCCTTTTCTGTTGGAATGCGATTCAAATTGAGATATGAGAGTGAGGATGCTTCTGAAAGAAGGCGTACTGGAATAATAATTGGAAGCAGAGAGGCAGATCCAATGTGGCATGGTTCGAAGTGGAAATGTTTAGTGGTGAAATGGGATGATGATGTGGAGTGCCGTCGGCCTAATGGGGTATCTCCTTGGGAGATTGAGCTTAGTGGATCAGTTTCAGGATCTCATCTGTCCACTCCCCATTCAAAACGGCTGAAATCATGCTTCCCCCAAGTTAATCCAGATATTGTGCTTCCAAATGGAAGTGTTTCTTCAGATTTTGCGGAGTCTGCCAGATTCCACAAGGTCTTGCAAGGTCAAGAATTGTTGGGTTTAAAAACTCGTGATGGTACTGTTAATACAGCTTCTCAGGCGACTGAGGCAAGAAATTTTCAGTACACTGATGAACGAAGTTGCTCTATCAACATGAGTAACAATATCTTAGGGGTTCCGAGACTTGGGGTGAAAACTCCAAGTGGAAACCCTGGGTTTTCCTACCATTGCTCAGGCTTTGGGGAATCTCAAAGATTCCAAGAGGTCTTGCAAGGTCAAGAAGTGTTTCGTCCTTACCGAGGAGGGACTTTGTCCGATGCCTGTATAAGAGGTTCTGGCTTCCGTCAACCTGATGGCAACCATGCACCTGGTGCAGCATTTAAATGGCTTGCACCACAAGGATGTGATCATCATGGGATAACCACATCAGTTCTGCCGCAAGCATCCTCTCCATCATCTGTCTTAATGTTTCCACAAACTAGTTCAAAGATGCCTGGCCTTGAATACATATACGGATGCCTGGATAGAAATGAGAATAGCCGACATTTTAAGATTGGACCTACACAAGATATGACAAGAACTGATCAAACATTACGACTCTGGCCTCATCTTATTTCAGGCAAAGTGCTAGATGAGTGTACGAGAAATGAGAAGCTGCACTCTCCAGTCAGTGGTGCTGAGCATGAATCAAATAACAAGTGTCTTAATACAAATGGCTGCAAAATCTTTGGTATATCATTGACTGAAAAGGCCCAAGCAGGCGATGAAGTGGATTGTGGCAATGCCAGTTATCATTCTCGGCTCCAGTCTTTAAAACCACAGATGCCAAAATCATTGGGCAGCAGTTGTGCCACGGTCCATGAACAAAGGCCTGTTGTTGGCAGGGTCGTTGATATTTCAGCAGTGAATACGATGATCTGA
More
|
||||||||||
| Protein seq | MVGIDLNTVEEEEDEEEGGATGTVTAPAEARAGGAVCLELWHACAGPVAPLPRKGSAVVYLPQGHLEHLGAAPGSGPGAAVPPHVFCRVVDVSLHADAATDEVYAQVSLVADNEEVERRMREGEDGAACDGEGEDAVKRPARIPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSLQRPFQELVAKDLHGTEWRFRHIYRGQPRRHLLTTGWSGFINKKKLVSGDAVLFLRGEDGELRLGVRRAAQLKNASPFPALHNQISNTSSLSEVAHAVAVKSIFHIYYNPSCTHRLSQSEFIIPYWKFMRSFSQPFSVGMRFKLRYESEDASERRRTGIIIGSREADPMWHGSKWKCLVVKWDDDVECRRPNGVSPWEIELSGSVSGSHLSTPHSKRLKSCFPQVNPDIVLPNGSVSSDFAESARFHKVLQGQELLGLKTRDGTVNTASQATEARNFQYTDERSCSINMSNNILGVPRLGVKTPSGNPGFSYHCSGFGESQRFQEVLQGQEVFRPYRGGTLSDACIRGSGFRQPDGNHAPGAAFKWLAPQGCDHHGITTSVLPQASSPSSVLMFPQTSSKMPGLEYIYGCLDRNENSRHFKIGPTQDMTRTDQTLRLWPHLISGKVLDECTRNEKLHSPVSGAEHESNNKCLNTNGCKIFGISLTEKAQAGDEVDCGNASYHSRLQSLKPQMPKSLGSSCATVHEQRPVVGRVVDISAVNTMI |
||||||||||
| Function | Auxin response factor 2 [UniProtKB/Swiss-Prot:Q0JKI9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g48060 | LOC_Os01g48060.1 | Chr01 | 27501563 | 27507096 | - | MSU_osa1r7 | ||
| CDS seq | ATGGTGGGCATCGACCTCAACACCGTGGAGGAGGAGGAAGACGAGGAGGAGGGCGGCGCCACCGGCACCGTCACGGCGCCTGCGGAGGCGAGGGCGGGGGGCGCGGTGTGCCTGGAGCTGTGGCACGCCTGCGCTGGCCCCGTGGCGCCGCTGCCGCGGAAGGGCAGCGCCGTCGTGTACCTGCCGCAGGGCCACCTCGAGCACCTCGGGGCCGCGCCCGGCTCCGGCCCCGGCGCCGCGGTGCCGCCGCACGTGTTCTGCCGCGTCGTCGACGTCAGCCTCCACGCGGACGCCGCGACGGACGAGGTGTACGCGCAGGTCTCGTTGGTCGCCGACAACGAGGAAGTGGAGAGGCGGATGCGGGAGGGAGAGGACGGCGCGGCCTGCGACGGCGAGGGCGAGGACGCCGTGAAGCGGCCGGCCCGGATTCCCCACATGTTCTGCAAGACGCTCACGGCCTCCGACACCAGCACGCACGGCGGCTTCTCCGTGCCTCGCCGCGCCGCCGAGGACTGCTTCCCGCCGCTGGACTACAGCCTGCAGAGGCCATTCCAGGAGCTCGTGGCAAAGGATCTGCACGGCACGGAATGGAGGTTCAGACATATCTATCGAGGCCAACCACGGAGGCACCTTTTAACCACTGGATGGAGCGGGTTTATCAACAAGAAGAAGCTAGTATCTGGGGATGCAGTGCTATTCCTCAGAGGTGAAGATGGAGAGCTTCGATTGGGAGTGCGCCGAGCTGCTCAGCTAAAAAATGCATCTCCTTTTCCTGCACTTCATAACCAGATCTCAAATACTAGTAGTCTTAGTGAAGTTGCACATGCTGTGGCCGTGAAAAGTATTTTTCACATCTACTACAATCCCAGTTGTACTCACAGGTTAAGTCAGTCTGAGTTCATTATACCATATTGGAAGTTTATGAGAAGCTTCAGTCAACCCTTTTCTGTTGGAATGCGATTCAAATTGAGATATGAGAGTGAGGATGCTTCTGAAAGAAGGCGTACTGGAATAATAATTGGAAGCAGAGAGGCAGATCCAATGTGGCATGGTTCGAAGTGGAAATGTTTAGTGGTGAAATGGGATGATGATGTGGAGTGCCGTCGGCCTAATGGGGTATCTCCTTGGGAGATTGAGCTTAGTGGATCAGTTTCAGGATCTCATCTGTCCACTCCCCATTCAAAACGGCTGAAATCATGCTTCCCCCAAGTTAATCCAGATATTGTGCTTCCAAATGGAAGTGTTTCTTCAGATTTTGCGGAGTCTGCCAGATTCCACAAGGTCTTGCAAGGTCAAGAATTGTTGGGTTTAAAAACTCGTGATGGTACTGTTAATACAGCTTCTCAGGCGACTGAGGCAAGAAATTTTCAGTACACTGATGAACGAAGTTGCTCTATCAACATGAGTAACAATATCTTAGGGGTTCCGAGACTTGGGGTGAAAACTCCAAGTGGAAACCCTGGGTTTTCCTACCATTGCTCAGGCTTTGGGGAATCTCAAAGATTCCAAGAGGTCTTGCAAGGTCAAGAAGTGTTTCGTCCTTACCGAGGAGGGACTTTGTCCGATGCCTGTATAAGAGGTTCTGGCTTCCGTCAACCTGATGGCAACCATGCACCTGGTGCAGCATTTAAATGGCTTGCACCACAAGGATGTGATCATCATGGGATAACCACATCAGTTCTGCCGCAAGCATCCTCTCCATCATCTGTCTTAATGTTTCCACAAACTAGTTCAAAGATGCCTGGCCTTGAATACATATACGGATGCCTGGATAGAAATGAGAATAGCCGACATTTTAAGATTGGACCTACACAAGATATGACAAGAACTGATCAAACATTACGACTCTGGCCTCATCTTATTTCAGGCAAAGTGCTAGATGAGTGTACGAGAAATGAGAAGCTGCACTCTCCAGTCAGTGGTGCTGAGCATGAATCAAATAACAAGTGTCTTAATACAAATGGCTGCAAAATCTTTGGTATATCATTGACTGAAAAGGCCCAAGCAGGCGATGAAGTGGATTGTGGCAATGCCAGTTATCATTCTCGGCTCCAGTCTTTAAAACCACAGATGCCAAAATCATTGGGCAGCAGTTGTGCCACGGTCCATGAACAAAGGCCTGTTGTTGGCAGGGTCGTTGATATTTCAGCAGTGAATACGATGATCTGA
More
|
|||||||
| Protein seq | MVGIDLNTVEEEEDEEEGGATGTVTAPAEARAGGAVCLELWHACAGPVAPLPRKGSAVVYLPQGHLEHLGAAPGSGPGAAVPPHVFCRVVDVSLHADAATDEVYAQVSLVADNEEVERRMREGEDGAACDGEGEDAVKRPARIPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSLQRPFQELVAKDLHGTEWRFRHIYRGQPRRHLLTTGWSGFINKKKLVSGDAVLFLRGEDGELRLGVRRAAQLKNASPFPALHNQISNTSSLSEVAHAVAVKSIFHIYYNPSCTHRLSQSEFIIPYWKFMRSFSQPFSVGMRFKLRYESEDASERRRTGIIIGSREADPMWHGSKWKCLVVKWDDDVECRRPNGVSPWEIELSGSVSGSHLSTPHSKRLKSCFPQVNPDIVLPNGSVSSDFAESARFHKVLQGQELLGLKTRDGTVNTASQATEARNFQYTDERSCSINMSNNILGVPRLGVKTPSGNPGFSYHCSGFGESQRFQEVLQGQEVFRPYRGGTLSDACIRGSGFRQPDGNHAPGAAFKWLAPQGCDHHGITTSVLPQASSPSSVLMFPQTSSKMPGLEYIYGCLDRNENSRHFKIGPTQDMTRTDQTLRLWPHLISGKVLDECTRNEKLHSPVSGAEHESNNKCLNTNGCKIFGISLTEKAQAGDEVDCGNASYHSRLQSLKPQMPKSLGSSCATVHEQRPVVGRVVDISAVNTMI
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g48060 | LOC_Os01g48060.2 | Chr01 | 27501506 | 27507181 | - | MSU_osa1r7 | ||
| CDS seq | ATGGTGGGCATCGACCTCAACACCGTGGAGGAGGAGGAAGACGAGGAGGAGGGCGGCGCCACCGGCACCGTCACGGCGCCTGCGGAGGCGAGGGCGGGGGGCGCGGTGTGCCTGGAGCTGTGGCACGCCTGCGCTGGCCCCGTGGCGCCGCTGCCGCGGAAGGGCAGCGCCGTCGTGTACCTGCCGCAGGGCCACCTCGAGCACCTCGGGGCCGCGCCCGGCTCCGGCCCCGGCGCCGCGGTGCCGCCGCACGTGTTCTGCCGCGTCGTCGACGTCAGCCTCCACGCGGACGCCGCGACGGACGAGGTGTACGCGCAGGTCTCGTTGGTCGCCGACAACGAGGAAGTGGAGAGGCGGATGCGGGAGGGAGAGGACGGCGCGGCCTGCGACGGCGAGGGCGAGGACGCCGTGAAGCGGCCGGCCCGGATTCCCCACATGTTCTGCAAGACGCTCACGGCCTCCGACACCAGCACGCACGGCGGCTTCTCCGTGCCTCGCCGCGCCGCCGAGGACTGCTTCCCGCCGCTGGACTACAGCCTGCAGAGGCCATTCCAGGAGCTCGTGGCAAAGGATCTGCACGGCACGGAATGGAGGTTCAGACATATCTATCGAGGCCAACCACGGAGGCACCTTTTAACCACTGGATGGAGCGGGTTTATCAACAAGAAGAAGCTAGTATCTGGGGATGCAGTGCTATTCCTCAGAGGTGAAGATGGAGAGCTTCGATTGGGAGTGCGCCGAGCTGCTCAGCTAAAAAATGCATCTCCTTTTCCTGCACTTCATAACCAGATCTCAAATACTAGTAGTCTTAGTGAAGTTGCACATGCTGTGGCCGTGAAAAGTATTTTTCACATCTACTACAATCCCAGGTTAAGTCAGTCTGAGTTCATTATACCATATTGGAAGTTTATGAGAAGCTTCAGTCAACCCTTTTCTGTTGGAATGCGATTCAAATTGAGATATGAGAGTGAGGATGCTTCTGAAAGAAGGCGTACTGGAATAATAATTGGAAGCAGAGAGGCAGATCCAATGTGGCATGGTTCGAAGTGGAAATGTTTAGTGGTGAAATGGGATGATGATGTGGAGTGCCGTCGGCCTAATGGGGTATCTCCTTGGGAGATTGAGCTTAGTGGATCAGTTTCAGGATCTCATCTGTCCACTCCCCATTCAAAACGGCTGAAATCATGCTTCCCCCAAGTTAATCCAGATATTGTGCTTCCAAATGGAAGTGTTTCTTCAGATTTTGCGGAGTCTGCCAGATTCCACAAGGTCTTGCAAGGTCAAGAATTGTTGGGTTTAAAAACTCGTGATGGTACTGTTAATACAGCTTCTCAGGCGACTGAGGCAAGAAATTTTCAGTACACTGATGAACGAAGTTGCTCTATCAACATGAGTAACAATATCTTAGGGGTTCCGAGACTTGGGGTGAAAACTCCAAGTGGAAACCCTGGGTTTTCCTACCATTGCTCAGGCTTTGGGGAATCTCAAAGATTCCAAGAGGTCTTGCAAGGTCAAGAAGTGTTTCGTCCTTACCGAGGAGGGACTTTGTCCGATGCCTGTATAAGAGGTTCTGGCTTCCGTCAACCTGATGGCAACCATGCACCTGGTGCAGCATTTAAATGGCTTGCACCACAAGGATGTGATCATCATGGGATAACCACATCAGTTCTGCCGCAAGCATCCTCTCCATCATCTGTCTTAATGTTTCCACAAACTAGTTCAAAGATGCCTGGCCTTGAATACATATACGGATGCCTGGATAGAAATGAGAATAGCCGACATTTTAAGATTGGACCTACACAAGATATGACAAGAACTGATCAAACATTACGACTCTGGCCTCATCTTATTTCAGGCAAAGTGCTAGATGAGTGTACGAGAAATGAGAAGCTGCACTCTCCAGTCAGTGGTGCTGAGCATGAATCAAATAACAAGTGTCTTAATACAAATGGCTGCAAAATCTTTGGTATATCATTGACTGAAAAGGCCCAAGCAGGCGATGAAGTGGATTGTGGCAATGCCAGTTATCATTCTCGGCTCCAGTCTTTAAAACCACAGATGCCAAAATCATTGGGCAGCAGTTGTGCCACGGTCCATGAACAAAGGCCTGTTGTTGGCAGGGTCGTTGATATTTCAGCAGTGAATACGATGATCTGA
More
|
|||||||
| Protein seq | MVGIDLNTVEEEEDEEEGGATGTVTAPAEARAGGAVCLELWHACAGPVAPLPRKGSAVVYLPQGHLEHLGAAPGSGPGAAVPPHVFCRVVDVSLHADAATDEVYAQVSLVADNEEVERRMREGEDGAACDGEGEDAVKRPARIPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSLQRPFQELVAKDLHGTEWRFRHIYRGQPRRHLLTTGWSGFINKKKLVSGDAVLFLRGEDGELRLGVRRAAQLKNASPFPALHNQISNTSSLSEVAHAVAVKSIFHIYYNPRLSQSEFIIPYWKFMRSFSQPFSVGMRFKLRYESEDASERRRTGIIIGSREADPMWHGSKWKCLVVKWDDDVECRRPNGVSPWEIELSGSVSGSHLSTPHSKRLKSCFPQVNPDIVLPNGSVSSDFAESARFHKVLQGQELLGLKTRDGTVNTASQATEARNFQYTDERSCSINMSNNILGVPRLGVKTPSGNPGFSYHCSGFGESQRFQEVLQGQEVFRPYRGGTLSDACIRGSGFRQPDGNHAPGAAFKWLAPQGCDHHGITTSVLPQASSPSSVLMFPQTSSKMPGLEYIYGCLDRNENSRHFKIGPTQDMTRTDQTLRLWPHLISGKVLDECTRNEKLHSPVSGAEHESNNKCLNTNGCKIFGISLTEKAQAGDEVDCGNASYHSRLQSLKPQMPKSLGSSCATVHEQRPVVGRVVDISAVNTMI
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g48060 | LOC_Os01g48060.3 | Chr01 | 27501563 | 27507096 | - | MSU_osa1r7 | ||
| CDS seq | ATGGTGGGCATCGACCTCAACACCGTGGAGGAGGAGGAAGACGAGGAGGAGGGCGGCGCCACCGGCACCGTCACGGCGCCTGCGGAGGCGAGGGCGGGGGGCGCGGTGTGCCTGGAGCTGTGGCACGCCTGCGCTGGCCCCGTGGCGCCGCTGCCGCGGAAGGGCAGCGCCGTCGTGTACCTGCCGCAGGGCCACCTCGAGCACCTCGGGGCCGCGCCCGGCTCCGGCCCCGGCGCCGCGGTGCCGCCGCACGTGTTCTGCCGCGTCGTCGACGTCAGCCTCCACGCGGACGCCGCGACGGACGAGGTGTACGCGCAGGTCTCGTTGGTCGCCGACAACGAGGAAGTGGAGAGGCGGATGCGGGAGGGAGAGGACGGCGCGGCCTGCGACGGCGAGGGCGAGGACGCCGTGAAGCGGCCGGCCCGGATTCCCCACATGTTCTGCAAGACGCTCACGGCCTCCGACACCAGCACGCACGGCGGCTTCTCCGTGCCTCGCCGCGCCGCCGAGGACTGCTTCCCGCCGCTGGACTACAGCCTGCAGAGGCCATTCCAGGAGCTCGTGGCAAAGGATCTGCACGGCACGGAATGGAGGTTCAGACATATCTATCGAGGCCAACCACGGAGGCACCTTTTAACCACTGGATGGAGCGGGTTTATCAACAAGAAGAAGCTAGTATCTGGGGATGCAGTGCTATTCCTCAGAGGTGAAGATGGAGAGCTTCGATTGGGAGTGCGCCGAGCTGCTCAGCTAAAAAATGCATCTCCTTTTCCTGCACTTCATAACCAGATCTCAAATACTAGTAGTCTTAGTGAAGTTGCACATGCTGTGGCCGTGAAAAGTATTTTTCACATCTACTACAATCCCAGGTTAAGTCAGTCTGAGTTCATTATACCATATTGGAAGTTTATGAGAAGCTTCAGTCAACCCTTTTCTGTTGGAATGCGATTCAAATTGAGATATGAGAGTGAGGATGCTTCTGAAAGAAGGCGTACTGGAATAATAATTGGAAGCAGAGAGGCAGATCCAATGTGGCATGGTTCGAAGTGGAAATGTTTAGTGGTGAAATGGGATGATGATGTGGAGTGCCGTCGGCCTAATGGGGTATCTCCTTGGGAGATTGAGCTTAGTGGATCAGTTTCAGGATCTCATCTGTCCACTCCCCATTCAAAACGGCTGAAATCATGCTTCCCCCAAGTTAATCCAGATATTGTGCTTCCAAATGGAAGTGTTTCTTCAGATTTTGCGGAGTCTGCCAGATTCCACAAGGTCTTGCAAGGTCAAGAATTGTTGGGTTTAAAAACTCGTGATGGTACTGTTAATACAGCTTCTCAGGCGACTGAGGCAAGAAATTTTCAGTACACTGATGAACGAAGTTGCTCTATCAACATGAGTAACAATATCTTAGGGGTTCCGAGACTTGGGGTGAAAACTCCAAGTGGAAACCCTGGGTTTTCCTACCATTGCTCAGGCTTTGGGGAATCTCAAAGATTCCAAGAGGTCTTGCAAGGTCAAGAAGTGTTTCGTCCTTACCGAGGAGGGACTTTGTCCGATGCCTGTATAAGAGGTTCTGGCTTCCGTCAACCTGATGGCAACCATGCACCTGGTGCAGCATTTAAATGGCTTGCACCACAAGGATGTGATCATCATGGGATAACCACATCAGTTCTGCCGCAAGCATCCTCTCCATCATCTGTCTTAATGTTTCCACAAACTAGTTCAAAGATGCCTGGCCTTGAATACATATACGGATGCCTGGATAGAAATGAGAATAGCCGACATTTTAAGATTGGACCTACACAAGATATGACAAGAACTGATCAAACATTACGACTCTGGCCTCATCTTATTTCAGGCAAAGTGCTAGATGAGTGTACGAGAAATGAGAAGCTGCACTCTCCAGTCAGTGGTGCTGAGCATGAATCAAATAACAAGTGTCTTAATACAAATGGCTGCAAAATCTTTGGTATATCATTGACTGAAAAGGCCCAAGCAGGCGATGAAGTGGATTGTGGCAATGCCAGTTATCATTCTCGGCTCCAGTCTTTAAAACCACAGATGCCAAAATCATTGGGCAGCAGTTGTGCCACGGTAAGTGCTCAATGA
More
|
|||||||
| Protein seq | MVGIDLNTVEEEEDEEEGGATGTVTAPAEARAGGAVCLELWHACAGPVAPLPRKGSAVVYLPQGHLEHLGAAPGSGPGAAVPPHVFCRVVDVSLHADAATDEVYAQVSLVADNEEVERRMREGEDGAACDGEGEDAVKRPARIPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSLQRPFQELVAKDLHGTEWRFRHIYRGQPRRHLLTTGWSGFINKKKLVSGDAVLFLRGEDGELRLGVRRAAQLKNASPFPALHNQISNTSSLSEVAHAVAVKSIFHIYYNPRLSQSEFIIPYWKFMRSFSQPFSVGMRFKLRYESEDASERRRTGIIIGSREADPMWHGSKWKCLVVKWDDDVECRRPNGVSPWEIELSGSVSGSHLSTPHSKRLKSCFPQVNPDIVLPNGSVSSDFAESARFHKVLQGQELLGLKTRDGTVNTASQATEARNFQYTDERSCSINMSNNILGVPRLGVKTPSGNPGFSYHCSGFGESQRFQEVLQGQEVFRPYRGGTLSDACIRGSGFRQPDGNHAPGAAFKWLAPQGCDHHGITTSVLPQASSPSSVLMFPQTSSKMPGLEYIYGCLDRNENSRHFKIGPTQDMTRTDQTLRLWPHLISGKVLDECTRNEKLHSPVSGAEHESNNKCLNTNGCKIFGISLTEKAQAGDEVDCGNASYHSRLQSLKPQMPKSLGSSCATVSAQ
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.369327 | 1.054025 | 0.653566 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0670800 | RBH | 2.031489 | 1.567129 | 2.538915 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g48870 | RBH | 1.796631 | 1.724233 | 1.434132 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0670800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0028600 | RBH | 0.473271 | 0.918343 | 6.170614 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0028140 | RBH | 0.086684 | 0.362821 | 1.310087 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0028580 | RBH | 0.301896 | 3.126082 | 6.430826 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0027780 | RBH | 0.096867 | 0.019741 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0027540 | RBH | 4.631728 | 0.000000 | 7.634524 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0458000 | RBH | 9.0569955 | 5.9298625 | 25.297407 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0027260 | RBH | 0.132523 | 0.0 | 0.682089 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0446700 | RBH | 9.391595 | 3.887415 | 69.8378965 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0027550 | RBH | 0.073217 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0027410 | RBH | 0.651905 | 3.061942 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0027730 | RBH | 2.636695 | 6.319726 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0027860 | RBH | 0.091716 | 0.159791 | 1.496493 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0027610 | RBH | 0.140229 | 0.464079 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G028040 | RBH | 0.190489 | 0.936897 | 2.528019 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0027760 | RBH | 0.505762 | 1.402286 | 6.834795 |
