Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g47200 | OGI:01082170 | 15/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:26975615-26978104 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GAGAAACCTAGTCCACCTGACCACCTCCCCACTTCCCTTTCCCCGATTCTTCTCACTACTGCCGACCAGTGTGGGCTACTACACTGAACTGAACACCAACCGAAGCAGCGACCTCAACAACCATCGAGCAAACTAGCAATGGCCTCCCCAATCCACTCGCCGCCGCCGGAGCCGGCCACCGATGGCGATGATGCCCAATCCCACCCTCCCCCTCCCACCCCGCACCCGGCAACCGATCCCCCTCCCATCTCACCCCAAAATCCAACCCCTCCTCCTCCTCCCCTTCCTGCCTCCGCCGCCGCCCCTACTACTCCGTCACCAAATCACTCCGGCGATCCCTCTCGCCCCATTCCTTCGCAGGCCCCGGCACCGCCCCCTCCTCCCACCGCCGATCCGTCTCCTCCCCTCCCCCACGACAACCGAACTCCACAGCCGCGGGCGGCGCCCCCTCCCGCTCCCGCTCCCGATCAACCAGCACCGCCTTCTCCACCACCATCACTGCCGCCTTCTCCCCCAGCACCGGGGTCCCCGGAATCCATGCTGGAGCGGGAGGCGTCGGAAGCGGATGGAGAACCGGAGAACATGACGCTTGCCCTTGCGCTGGCGGAGACGGAGACGGAGAAGGCGATGCCGCCGACGCCGCCGAAGGCCGCGGAAGCGGCGGAGTCCCCAACCGGATCGCCGCAGAAGGAGTCTGCCCTGACCATTGCCAAGCTCCTCTCCGGCGAGGACCACGCGGGGACGGAGACGAAGCCGGTGCCCGAGAAGGCCGCACCAGCAGCAACCACCACCACCGCCGCCGTCGCATCAGTCGGCGGCGGCGGCGGTGGTGGAGGAGGAGGCGTGGGGTCTAAGAGATGGCTTCTTGGCGGCGTCCCAGAGAAGGTGCGGCGGTCGGAGCTCAGGAGGGCCGAGCTAGGGTTCAGGGTTTTGGCCGCCGTCTTCTGCTTGGTCTCGCTCTCCGTCATGGCCGCCGATACCACGCCGGGCTGGTCCGGTGACTCCTTCCGCCGCTACAACGAGTACAGGTTGCGCTCTCAACGCCGTACCATGATGCTTGCCAAATCCCCCTCTGGCGGCCAGCTTCTGTTATTGATGGAAGTTGTGTGCTTCTGCAATGCAGGTATACACTTTCTGCGAGTGTGTTGGCTTTTACTTACTCGGGGTTCCAGTTGGTCGTGGAAGTGCACTACTTTGTCACGGGGAGACGTATAATTCGAGACCCATCAGGGAAGTACTTCAATCTCGCAATGGATCAGGCAAGAACTTCAGCTCTGAATGTATTTTCTGTCCTTTCGGTTTCATATTATGTGTGAGCTTTAATCTGTTGCTGATTGGTCTATGGTTACAAATTGTTGTAAGCTTGGATTCCGAGACAGTGGTCAACTTTTTGCAGGATTAGATTATCTTAATTCTTAAGTTGTATGAATTGGGGTAAAGTAAGCTGTAAGCTGCATGCAGGGGATGGACTTTGGTTGTTCATGAACTTTATGTTATAGTTGATCATTTTTCTCTACGACATATTCAATCTTGAATCGAGGACTCAATTTTACAGTTCATTATCACAGTGCTGTTTGCAATGTAAGAAAATTTTCATGTACCTGTCAAGTCAATCATATAATTTGCCTAAAAAAATGTGGAATTCAGATGCTTCTGGTGCAGGCGCGTAAAATTTGTAGATTATGTTGTGCACTTTATCCTTAGTTCAGATGTTGCTGGTTCTATCGTGCCAGGCGCGTAGAGTTTGTAGATCAGATGTTGCTGGTTCTATCGTGCCAGGCGCATAGAGTTTGTAGATCAAGTTGTACACTTCATTCTTCTGTCCTTCCTTTGATATAAGCTATATCTCATCAGCTGGAGTTATGCTGCACTTGTTCTCTAACTTCCTGTTTGGCATTGTCCTAACATTTATCTCTGAGGTTCTGCACATATTGGCATCTTGGCTGAGAACTGTATGCATGGGATAGGATTTCGTTGCATGACTATTTATATATGTTCATTGCAGATATTGGCTTACCTCCTGTTGTCAGCATCTTCAGCAGCACTTTCTCGCAATGATGTTTGGGTGTCTCGGTTTGGAGTGGATCAATTTGCCAAACTTATCAATGCTTCAGCCTCCATGGCATTCTTAGCTTTCGTTGCTCTTGGTTTTAGCTCCATAATCTCAGCGTATCATGTCTTCAGCTCGGTTTTTTAAACCCATTGTACATTACTTGTTGTAAGTACTATGTGCTAGTCTGCTAGATGTATCTTGGTCAAGCCAACCTTGATTGTTGCTTCTTGTTTGTAGAATTGTGGCAACGATATTGGACTCCGAAATGGGAATACACGGTGATCTTTTTAAGAGCGTGTAATGGCAGTTGGGCCTTGGGGACCAATCGGTTCTGTAATAAAAATTCTGTAGAGCAAATCATTCAAGGATGCGACTTTTACTGGTATTGATTGACTGTTTTTATGGTCATGTACTCTACGGATGCATTATCTGTTCTA
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| CDS seq | ATGGCCTCCCCAATCCACTCGCCGCCGCCGGAGCCGGCCACCGATGGCGATGATGCCCAATCCCACCCTCCCCCTCCCACCCCGCACCCGGCAACCGATCCCCCTCCCATCTCACCCCAAAATCCAACCCCTCCTCCTCCTCCCCTTCCTGCCTCCGCCGCCGCCCCTACTACTCCGTCACCAAATCACTCCGGCGATCCCTCTCGCCCCATTCCTTCGCAGGCCCCGGCACCGCCCCCTCCTCCCACCGCCGATCCGTCTCCTCCCCTCCCCCACGACAACCGAACTCCACAGCCGCGGGCGGCGCCCCCTCCCGCTCCCGCTCCCGATCAACCAGCACCGCCTTCTCCACCACCATCACTGCCGCCTTCTCCCCCAGCACCGGGGTCCCCGGAATCCATGCTGGAGCGGGAGGCGTCGGAAGCGGATGGAGAACCGGAGAACATGACGCTTGCCCTTGCGCTGGCGGAGACGGAGACGGAGAAGGCGATGCCGCCGACGCCGCCGAAGGCCGCGGAAGCGGCGGAGTCCCCAACCGGATCGCCGCAGAAGGAGTCTGCCCTGACCATTGCCAAGCTCCTCTCCGGCGAGGACCACGCGGGGACGGAGACGAAGCCGGTGCCCGAGAAGGCCGCACCAGCAGCAACCACCACCACCGCCGCCGTCGCATCAGTCGGCGGCGGCGGCGGTGGTGGAGGAGGAGGCGTGGGGTCTAAGAGATGGCTTCTTGGCGGCGTCCCAGAGAAGGTGCGGCGGTCGGAGCTCAGGAGGGCCGAGCTAGGGTTCAGGGTTTTGGCCGCCGTCTTCTGCTTGGTCTCGCTCTCCGTCATGGCCGCCGATACCACGCCGGGCTGGTCCGGTGACTCCTTCCGCCGCTACAACGAGTACAGGTATACACTTTCTGCGAGTGTGTTGGCTTTTACTTACTCGGGGTTCCAGTTGGTCGTGGAAGTGCACTACTTTGTCACGGGGAGACGTATAATTCGAGACCCATCAGGGAAGTACTTCAATCTCGCAATGGATCAGATATTGGCTTACCTCCTGTTGTCAGCATCTTCAGCAGCACTTTCTCGCAATGATGTTTGGGTGTCTCGGTTTGGAGTGGATCAATTTGCCAAACTTATCAATGCTTCAGCCTCCATGGCATTCTTAGCTTTCGTTGCTCTTGGTTTTAGCTCCATAATCTCAGCGTATCATGTCTTCAGCTCGGTTTTTTAA
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| Protein seq | MASPIHSPPPEPATDGDDAQSHPPPPTPHPATDPPPISPQNPTPPPPPLPASAAAPTTPSPNHSGDPSRPIPSQAPAPPPPPTADPSPPLPHDNRTPQPRAAPPPAPAPDQPAPPSPPPSLPPSPPAPGSPESMLEREASEADGEPENMTLALALAETETEKAMPPTPPKAAEAAESPTGSPQKESALTIAKLLSGEDHAGTETKPVPEKAAPAATTTTAAVASVGGGGGGGGGGVGSKRWLLGGVPEKVRRSELRRAELGFRVLAAVFCLVSLSVMAADTTPGWSGDSFRRYNEYRYTLSASVLAFTYSGFQLVVEVHYFVTGRRIIRDPSGKYFNLAMDQILAYLLLSASSAALSRNDVWVSRFGVDQFAKLINASASMAFLAFVALGFSSIISAYHVFSSVF |
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| Function | CASP-like protein 4A3 [UniProtKB/Swiss-Prot:Q84WP5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g47200 | LOC_Os01g47200.1 | Chr01 | 26975615 | 26978104 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCCTCCCCAATCCACTCGCCGCCGCCGGAGCCGGCCACCGATGGCGATGATGCCCAATCCCACCCTCCCCCTCCCACCCCGCACCCGGCAACCGATCCCCCTCCCATCTCACCCCAAAATCCAACCCCTCCTCCTCCTCCCCTTCCTGCCTCCGCCGCCGCCCCTACTACTCCGTCACCAAATCACTCCGGCGATCCCTCTCGCCCCATTCCTTCGCAGGCCCCGGCACCGCCCCCTCCTCCCACCGCCGATCCGTCTCCTCCCCTCCCCCACGACAACCGAACTCCACAGCCGCGGGCGGCGCCCCCTCCCGCTCCCGCTCCCGATCAACCAGCACCGCCTTCTCCACCACCATCACTGCCGCCTTCTCCCCCAGCACCGGGGTCCCCGGAATCCATGCTGGAGCGGGAGGCGTCGGAAGCGGATGGAGAACCGGAGAACATGACGCTTGCCCTTGCGCTGGCGGAGACGGAGACGGAGAAGGCGATGCCGCCGACGCCGCCGAAGGCCGCGGAAGCGGCGGAGTCCCCAACCGGATCGCCGCAGAAGGAGTCTGCCCTGACCATTGCCAAGCTCCTCTCCGGCGAGGACCACGCGGGGACGGAGACGAAGCCGGTGCCCGAGAAGGCCGCACCAGCAGCAACCACCACCACCGCCGCCGTCGCATCAGTCGGCGGCGGCGGCGGTGGTGGAGGAGGAGGCGTGGGGTCTAAGAGATGGCTTCTTGGCGGCGTCCCAGAGAAGGTGCGGCGGTCGGAGCTCAGGAGGGCCGAGCTAGGGTTCAGGGTTTTGGCCGCCGTCTTCTGCTTGGTCTCGCTCTCCGTCATGGCCGCCGATACCACGCCGGGCTGGTCCGGTGACTCCTTCCGCCGCTACAACGAGTACAGGTATACACTTTCTGCGAGTGTGTTGGCTTTTACTTACTCGGGGTTCCAGTTGGTCGTGGAAGTGCACTACTTTGTCACGGGGAGACGTATAATTCGAGACCCATCAGGGAAGTACTTCAATCTCGCAATGGATCAGATATTGGCTTACCTCCTGTTGTCAGCATCTTCAGCAGCACTTTCTCGCAATGATGTTTGGGTGTCTCGGTTTGGAGTGGATCAATTTGCCAAACTTATCAATGCTTCAGCCTCCATGGCATTCTTAGCTTTCGTTGCTCTTGGTTTTAGCTCCATAATCTCAGCGTATCATGTCTTCAGCTCGGTTTTTTAA
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| Protein seq | MASPIHSPPPEPATDGDDAQSHPPPPTPHPATDPPPISPQNPTPPPPPLPASAAAPTTPSPNHSGDPSRPIPSQAPAPPPPPTADPSPPLPHDNRTPQPRAAPPPAPAPDQPAPPSPPPSLPPSPPAPGSPESMLEREASEADGEPENMTLALALAETETEKAMPPTPPKAAEAAESPTGSPQKESALTIAKLLSGEDHAGTETKPVPEKAAPAATTTTAAVASVGGGGGGGGGGVGSKRWLLGGVPEKVRRSELRRAELGFRVLAAVFCLVSLSVMAADTTPGWSGDSFRRYNEYRYTLSASVLAFTYSGFQLVVEVHYFVTGRRIIRDPSGKYFNLAMDQILAYLLLSASSAALSRNDVWVSRFGVDQFAKLINASASMAFLAFVALGFSSIISAYHVFSSVF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.698208 | 0.298249 | 0.534232 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0661000 | RBH | 1.204862 | 0.455311 | 1.165107 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g45360 | RBH | 1.628817 | 1.044290 | 0.204400 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0661000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0028000 | RBH | 0.346039 | 3.186559 | 8.100459 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0027510 | RBH | 0.000000 | 13.523773 | 2.756185 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0027960 | RBH | 0.255705 | 3.336057 | 6.479957 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0027200 | RBH | 0.061912 | 0.199898 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0026930 | RBH | 1.271202 | 2.096601 | 11.628254 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0449000 | SBH | 3.6224915 | 5.9220065 | 17.8007715 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0026630 | RBH | 0.0 | 0.572717 | 0.529013 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0438100 | RBH | 0.873553 | 2.9349145 | 3.8329865 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0026880 | RBH | 0.075450 | 0.147552 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0026800 | RBH | 0.0 | 2.332312 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0027130 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0027200 | RBH | 0.446750 | 0.359530 | 0.633906 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0027010 | RBH | 0.000000 | 2.946775 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G027410 | RBH | 0.0 | 1.557500 | 1.697025 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0027160 | RBH | 0.0 | 0.0 | 2.549637 |
