Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g44110 | OGI:01078160 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:25281682-25286614 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GATTAAACAAACAGAGGATTTCGGTGAGGATTGAGGGGGAGTGGTGGCCGCACTCTCCCAGGCTCAGATCAGCCAGCCTGAATCCATGCTTATTCGGTCATGCTTATGCATGCAGTTATTCTATTCTGTCAGTTGACCTTATCCTGCAGACCAGCGAAATTGTTTTCCCTTCCCTCTCTTCCCCTGCAGCTGCAGCAGCAGCAGCAGCACAGCGCCACAGCCATTTTCACCGCTGCATCCAACAATCTACCGGACCATTTCTTTCTTTAATTGCCAGCCCACCATCTCTCCTTCACTTCTCCCTGATCCAGCCTTTAATGCTAGACCTGCAACATCCACCACCTTCCCTTTTACTCTCTCTCTCTCTCTCTCTCTCTCCGTCTTGGGCGTTACTTCCATCGCCATTGCTGGCACAGGTTGGATTCTTGTTCATGTTTCGCGAGGCAATCGTTGCTGTTCTTGCCTGCTTCTGTGATCTCAAGTTGTTGGCAGGAGTAGGGCGAAGTGTGGGATTTGGTCCTAACTTCTCACTGGTTCTTGGTTTTCTTTTTCCTTTTCCCTTTTGATGCTCCAGGTTCTTTGCTTGAGGGATGAGCAGATGGAGGTCCTATTGCCAAAAGTGGTAAGCTTTAACCTTCTTCTCATGTGATGACTGATGAGACTGGGGATCAAAAGAGAATTTTGGGAGTCCTCATATCCTTTTTCCTTTTGGCTGTCGAATTGCATATCTTTTTCTGCTTACATCGATGCATCTCACCGTCCCAAAAATACTGTACGTTTCTCTTGGGGCGCAATTCCTGCGTGGAGCAGGAATTGTGCGTTGTTGGGTTTCCTTGCAGGGCGTAGTTCAAGTGACATTTTTTTTCTTTATAAGCTGGACTTGCTTGATTGTTTCAATGCAAGAACAACTAAGTCATATGCATTTAAGAGCCTCATTCTCATTCTGCAGGGAGAAGAGTGCATCCACACTTGCTGAGGCCAACTAGGGGATCCCCATTGATGCAGTCCAACTGAAATTTCCCAATCTACACAAGAATTGAGCACGGGGCCACTATGGGTTCCAGTGATTTGAGTTCAGAGATGAGGAGGACGGTTCTTGGCCTAACATTGTGGGTCTGGATTGCAATTGGTGTGGTCGCTCTTCTAGTTGCCATTCTGCTGATGATATGCATTTGGATGGCATCCCGCCGCAAGACGAAGAGAACAATGGACAATTTGAGGCAAACACAGATCCCCATTTTCTCCAAGGAGATCCCGGTTGACAGGGTTGGCGGCCGCAGCCTTGCGCAGACAATGCATGAACGTGAGCAGCCTAGCTTCCCACCGCAAGACAAGCACACAAACCGGGAGCCGGGGAAGACGCTGGGGCATATGGCACTGAGCAAGTCATCGGAACCTGACAACATGAGCCAGGGGAGCTCAGTTTGCAATGTTGACCGTGCTGGTAGTGTGCATTCCGGTGAAGATGGTAGCACAGGGCATGGTAGGAAACCGTATTCTCCTGCAGCATTTGTGTCAGCGTCGCCGCTGGTTGGCCTCCCGGAGTTCTCTCATCTCGGCTGGGGCCATTGGTTTACTTTGCGTGACCTTGAGCTTGCTACCAACCGTTTCTCTAGGGAGAATGTGCTTGGAGAGGGTGGATATGGAGTTGTGTATCGTGGCCGTCTAGTGAATGGAACTGAAGTTGCTATCAAAAAGATCTTTAACAATATGTAAGCTCACAATTGGCTGCTAGCTATTGCTCTGATCTCTGTTTCTAACAATCTTACTCATTTACTTAATTACATTGCATGATGGGTTTGCAGGGGGCAGGCAGAAAAGGAGTTCAGAGTGGAGGTCGAGGCTATTGGCCATGTCCGGCATAAGAATTTGGTTCGGCTGTTGGGTTACTGTGTTGAGGGAGTGAATAGGTAAGTGAAGTGCCAGACATGATACACTTGCTCTGTTGTTTCTTTTCAGAAATGTCAGTTAGTAACAAAATTGTCTGTTTCTTTTTTTATTTATATATGTACTTGTAATGCTAGGCTAACCTGATTTTGCCTAAGTTTGTATGGACTATCGGAATGATTCTTAATAGATCAACTAAAGGAACTGCGGCCTTAATTTTGTCCTTTCAGATGTACAGATGAAAAAAATAAGGTCATGCTTTTTAGTAAACTAGCAAATTCCCTTTTATACTGTTTTTTAGATTGTACAAACTACATTCTACTATGTCCACATAGCTCTCCTGAAGACATGAAGTGAGAGTTGTCCTGCTGTATCTCCTAAGCTTTTCAGTTGTATCTTCAACCTTCCTTAGACTGCTCCTGCATTTGGCCCAATTAATTTTTCATGTATCCTATACAGATGATAATTGCCTACAGGGCTCCCTCATCCTCGCAAATCCAACATGTAATGCGGACACATGCTTCAAAGCACATCTATGGCACATAAAACATGTACTCCCTCCGTGTGAAAATATAGGGTGTATTTTGTTTCGTTAGGACAAGGTTTTGACCGAAGATTACTCTATTATGATATAATTTTTAGGACGCAAAGTTAAATTTATTAGATTCATATTCAAAAGTACTTGCTTATGATTATACTTTTGTATCACATAAATCATATTATAATATTGCAACAAAGTTTTGTCCTAACAAAACAAAATACGCCCTATATTTTGGAATAGAGGGAGTGCAATATTATTAGCCTTTTGCGTCAAAAAAAATATTATTAGCCTGCCAGCTCTGGTGCTGCAAAAAGAATAAACGGTGAGGTAATAGAGGGTTGAGTTGAGTTGGGCAAAGCCTGACAGTAATTCCCATAAAAAATAGAGGGTTGAGTTAGCCTTTGATTAATACTTCTACTCCATGCCCATATATTTTACAGTGATTATGATGTCAACAGAAAATGATGAACTATGAATTGCATTGGAGCATCATGAATTCTTTGTGTTGAGGCAGAATGCTATATTAGGTACCATTTTTCCATGACAAATATGTACACCTCCACAGATTAGCAAGAGTTGATTCTTCTCTTTATGAAATCCGTAACCCTTGGTCTTTTAAGGAAGAGCTAAACAAATTTGCATCACCTGTTTAGAAATTTGTGGTTGCATCTTAGGCTCTAGGATATATTGTATATCACAGAAATAATATGACAATGGTTTTTTAATAGGATGTTGGTGTATGAATTTGTGAATAACGGTAACTTGGAGCAGTGGCTTCATGGAGCTATGCGCCAGCATGGTGTTTTTAGCTGGGAAAATCGTATGAAGGTTGTTATCGGCACTGCAAAAGCGTAAGTTTCATCAGCTTCTCAGTCTATAAGATACATGTTGTTTCTGTTGTCGGAATTTGTTTGATGATATTTTGGCGGGTTAATCATGATCACAGACTAGCTTACCTTCATGAAGCTATAGAACCAAAAGTTGTGCACCGAGATATAAAATCAAGCAATATCTTGATTGATGAGGAATTTAATGGCAAGGTCTCTGACTTTGGATTGGCCAAGCTTTTGGGGTCTGATAAAAGCCACATTACTACTAGAGTGATGGGAACATTTGGGTATTTTCCTCTGCTAGCTACCCATTATTTGTACTCATTTGCATCCTTTGTTTGCCATATTTCAAGGAGTACAATAATTCTCATCCATTCTTCTTGATTTAGATATGTTGCACCTGAGTATGCTAACACGGGCATGTTGAATGAAAAGAGCGATGTTTATAGTTTTGGTGTTCTCTTGTTGGAAACTGTGACAGGAAGGGAACCTGTTGATTACAGCCGCTCTGGCAATGAGGTACATAATATTACTTTGATCCATGTTTTGTAATCGTTTGGTTCCTGTTATAATATCAGTATCTTTTTAGTACTGTTGCTGATTTTTTATGCATTTAAACATGATAGTTTAGTATTGTGCCCTTTGGTAAGTTTGTATTGACAACTTCTTATGAACATTATGCTTCTGCACTGCTGTTAGTCAAAAAAGACATTTTTATTCAGATGAAAACCAATTTCTTTCTTTAGGTCAATCTTGTCGAGTGGCTCAAAATAATGGTGGCAAACCGGAGAGCAGAAGAAGTGGTTGATCCAATCCTAGAGGTTAGACCAACTGTTAGAGCTATTAAGCGGGCTCTTTTGGTTGCGTTACGGTGTGTTGATCCTGACTCTGAAAAGAGACCTAAGATGGGCCAAGTTGTTAGGATGCTTGAGTCTGAAGAAGTTCCATACCGGGAGGTAATGATTGAAAAACCAAACTTGTTGTATACTGTAAGTAATAAAATTCTTGCTTAACATATCTTCATGTGCAAAAGGATCGGAGGAACCGAAGGAGTCGCACAGGAAGCATGGATATCGAGTCGATTGCAGAGGGCTCAAATTCAACCGAATTTGCAAACAAGGTAGAAAGAACTGGAAGCTCGACATCAGACAGGTCTCAGTCCTGAGTTCATAAACCTACGATCCATCCTGAGTACTCATCATCATCATCATTGATCAGCCTGGGATATGATGTTATTGATCACCAATGTGGTTACCGTTCTGATAGGGAGATGATTGGTAGGTAAAACCTAGCCATTAGGTCGAGTAGTAGCATTATTGGAGGGAAGGATTTCATGGTTCTTTTGTTGTTCAAAGTTTTTTGTGCTGTATAGGTATATGTTGGTTCTTTGGATGACCATTCTTGTGATCCACGAAGCTCGTTGGGTGTATGCATGACACGGATCATTCATTGGGTTTATGTGCTGTTAAGCTTTCAGTTTTCACTTGCTCCTCTGTTTGCAGACTTGCAGTGTTGTGCATGAGGGAATGGTGTTATCATCAGTTTCTCTCCCCTTGTATTGGTAGAATCAGCTACACGGTTCATTTGACCAGGCCATGTCAGTTTGACTGAGTTTGGTCGAGAGTATGATGTTTCTCATGATGCTTTAAGCCAAATGACAACACTGAATTTCACG
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| CDS seq | ATGGGTTCCAGTGATTTGAGTTCAGAGATGAGGAGGACGGTTCTTGGCCTAACATTGTGGGTCTGGATTGCAATTGGTGTGGTCGCTCTTCTAGTTGCCATTCTGCTGATGATATGCATTTGGATGGCATCCCGCCGCAAGACGAAGAGAACAATGGACAATTTGAGGCAAACACAGATCCCCATTTTCTCCAAGGAGATCCCGGTTGACAGGGTTGGCGGCCGCAGCCTTGCGCAGACAATGCATGAACGTGAGCAGCCTAGCTTCCCACCGCAAGACAAGCACACAAACCGGGAGCCGGGGAAGACGCTGGGGCATATGGCACTGAGCAAGTCATCGGAACCTGACAACATGAGCCAGGGGAGCTCAGTTTGCAATGTTGACCGTGCTGGTAGTGTGCATTCCGGTGAAGATGGTAGCACAGGGCATGGTAGGAAACCGTATTCTCCTGCAGCATTTGTGTCAGCGTCGCCGCTGGTTGGCCTCCCGGAGTTCTCTCATCTCGGCTGGGGCCATTGGTTTACTTTGCGTGACCTTGAGCTTGCTACCAACCGTTTCTCTAGGGAGAATGTGCTTGGAGAGGGTGGATATGGAGTTGTGTATCGTGGCCGTCTAGTGAATGGAACTGAAGTTGCTATCAAAAAGATCTTTAACAATATGGGGCAGGCAGAAAAGGAGTTCAGAGTGGAGGTCGAGGCTATTGGCCATGTCCGGCATAAGAATTTGGTTCGGCTGTTGGGTTACTGTGTTGAGGGAGTGAATAGGATGTTGGTGTATGAATTTGTGAATAACGGTAACTTGGAGCAGTGGCTTCATGGAGCTATGCGCCAGCATGGTGTTTTTAGCTGGGAAAATCGTATGAAGGTTGTTATCGGCACTGCAAAAGCACTAGCTTACCTTCATGAAGCTATAGAACCAAAAGTTGTGCACCGAGATATAAAATCAAGCAATATCTTGATTGATGAGGAATTTAATGGCAAGGTCTCTGACTTTGGATTGGCCAAGCTTTTGGGGTCTGATAAAAGCCACATTACTACTAGAGTGATGGGAACATTTGGATATGTTGCACCTGAGTATGCTAACACGGGCATGTTGAATGAAAAGAGCGATGTTTATAGTTTTGGTGTTCTCTTGTTGGAAACTGTGACAGGAAGGGAACCTGTTGATTACAGCCGCTCTGGCAATGAGGTCAATCTTGTCGAGTGGCTCAAAATAATGGTGGCAAACCGGAGAGCAGAAGAAGTGGTTGATCCAATCCTAGAGGTTAGACCAACTGTTAGAGCTATTAAGCGGGCTCTTTTGGTTGCGTTACGGTGTGTTGATCCTGACTCTGAAAAGAGACCTAAGATGGGCCAAGTTGTTAGGATGCTTGAGTCTGAAGAAGTTCCATACCGGGAGGATCGGAGGAACCGAAGGAGTCGCACAGGAAGCATGGATATCGAGTCGATTGCAGAGGGCTCAAATTCAACCGAATTTGCAAACAAGGTAGAAAGAACTGGAAGCTCGACATCAGACAGGTCTCAGTCCTGA
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| Protein seq | MGSSDLSSEMRRTVLGLTLWVWIAIGVVALLVAILLMICIWMASRRKTKRTMDNLRQTQIPIFSKEIPVDRVGGRSLAQTMHEREQPSFPPQDKHTNREPGKTLGHMALSKSSEPDNMSQGSSVCNVDRAGSVHSGEDGSTGHGRKPYSPAAFVSASPLVGLPEFSHLGWGHWFTLRDLELATNRFSRENVLGEGGYGVVYRGRLVNGTEVAIKKIFNNMGQAEKEFRVEVEAIGHVRHKNLVRLLGYCVEGVNRMLVYEFVNNGNLEQWLHGAMRQHGVFSWENRMKVVIGTAKALAYLHEAIEPKVVHRDIKSSNILIDEEFNGKVSDFGLAKLLGSDKSHITTRVMGTFGYVAPEYANTGMLNEKSDVYSFGVLLLETVTGREPVDYSRSGNEVNLVEWLKIMVANRRAEEVVDPILEVRPTVRAIKRALLVALRCVDPDSEKRPKMGQVVRMLESEEVPYREDRRNRRSRTGSMDIESIAEGSNSTEFANKVERTGSSTSDRSQS |
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| Function | Probable receptor-like protein kinase At2g42960 [UniProtKB/Swiss-Prot:Q9SJG2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g44110 | LOC_Os01g44110.1 | Chr01 | 25281682 | 25286614 | + | MSU_osa1r7 | ||
| CDS seq | ATGGGTTCCAGTGATTTGAGTTCAGAGATGAGGAGGACGGTTCTTGGCCTAACATTGTGGGTCTGGATTGCAATTGGTGTGGTCGCTCTTCTAGTTGCCATTCTGCTGATGATATGCATTTGGATGGCATCCCGCCGCAAGACGAAGAGAACAATGGACAATTTGAGGCAAACACAGATCCCCATTTTCTCCAAGGAGATCCCGGTTGACAGGGTTGGCGGCCGCAGCCTTGCGCAGACAATGCATGAACGTGAGCAGCCTAGCTTCCCACCGCAAGACAAGCACACAAACCGGGAGCCGGGGAAGACGCTGGGGCATATGGCACTGAGCAAGTCATCGGAACCTGACAACATGAGCCAGGGGAGCTCAGTTTGCAATGTTGACCGTGCTGGTAGTGTGCATTCCGGTGAAGATGGTAGCACAGGGCATGGTAGGAAACCGTATTCTCCTGCAGCATTTGTGTCAGCGTCGCCGCTGGTTGGCCTCCCGGAGTTCTCTCATCTCGGCTGGGGCCATTGGTTTACTTTGCGTGACCTTGAGCTTGCTACCAACCGTTTCTCTAGGGAGAATGTGCTTGGAGAGGGTGGATATGGAGTTGTGTATCGTGGCCGTCTAGTGAATGGAACTGAAGTTGCTATCAAAAAGATCTTTAACAATATGGGGCAGGCAGAAAAGGAGTTCAGAGTGGAGGTCGAGGCTATTGGCCATGTCCGGCATAAGAATTTGGTTCGGCTGTTGGGTTACTGTGTTGAGGGAGTGAATAGGATGTTGGTGTATGAATTTGTGAATAACGGTAACTTGGAGCAGTGGCTTCATGGAGCTATGCGCCAGCATGGTGTTTTTAGCTGGGAAAATCGTATGAAGGTTGTTATCGGCACTGCAAAAGCACTAGCTTACCTTCATGAAGCTATAGAACCAAAAGTTGTGCACCGAGATATAAAATCAAGCAATATCTTGATTGATGAGGAATTTAATGGCAAGGTCTCTGACTTTGGATTGGCCAAGCTTTTGGGGTCTGATAAAAGCCACATTACTACTAGAGTGATGGGAACATTTGGATATGTTGCACCTGAGTATGCTAACACGGGCATGTTGAATGAAAAGAGCGATGTTTATAGTTTTGGTGTTCTCTTGTTGGAAACTGTGACAGGAAGGGAACCTGTTGATTACAGCCGCTCTGGCAATGAGGTCAATCTTGTCGAGTGGCTCAAAATAATGGTGGCAAACCGGAGAGCAGAAGAAGTGGTTGATCCAATCCTAGAGGTTAGACCAACTGTTAGAGCTATTAAGCGGGCTCTTTTGGTTGCGTTACGGTGTGTTGATCCTGACTCTGAAAAGAGACCTAAGATGGGCCAAGTTGTTAGGATGCTTGAGTCTGAAGAAGTTCCATACCGGGAGGATCGGAGGAACCGAAGGAGTCGCACAGGAAGCATGGATATCGAGTCGATTGCAGAGGGCTCAAATTCAACCGAATTTGCAAACAAGGTAGAAAGAACTGGAAGCTCGACATCAGACAGGTCTCAGTCCTGA
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| Protein seq | MGSSDLSSEMRRTVLGLTLWVWIAIGVVALLVAILLMICIWMASRRKTKRTMDNLRQTQIPIFSKEIPVDRVGGRSLAQTMHEREQPSFPPQDKHTNREPGKTLGHMALSKSSEPDNMSQGSSVCNVDRAGSVHSGEDGSTGHGRKPYSPAAFVSASPLVGLPEFSHLGWGHWFTLRDLELATNRFSRENVLGEGGYGVVYRGRLVNGTEVAIKKIFNNMGQAEKEFRVEVEAIGHVRHKNLVRLLGYCVEGVNRMLVYEFVNNGNLEQWLHGAMRQHGVFSWENRMKVVIGTAKALAYLHEAIEPKVVHRDIKSSNILIDEEFNGKVSDFGLAKLLGSDKSHITTRVMGTFGYVAPEYANTGMLNEKSDVYSFGVLLLETVTGREPVDYSRSGNEVNLVEWLKIMVANRRAEEVVDPILEVRPTVRAIKRALLVALRCVDPDSEKRPKMGQVVRMLESEEVPYREDRRNRRSRTGSMDIESIAEGSNSTEFANKVERTGSSTSDRSQS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.063306 | 0.064570 | 0.740713 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0631700 | RBH | 0.109826 | 0.112629 | 3.375801 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g47470 | RBH | 0.126961 | 0.332104 | 0.319880 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0631700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0026220 | RBH | 0.293891 | 0.000000 | 5.624395 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0025840 | RBH | 0.0 | 4.664895 | 1.173397 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0026190 | RBH | 0.249790 | 14.049477 | 6.575957 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0025510 | RBH | 0.0 | 0.758142 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0025230 | RBH | 0.0 | 26.357231 | 20.384531 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0425200 | RBH | 7.638309 | 11.502083 | 32.739485 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0024900 | RBH | 0.040518 | 1.625602 | 1.063476 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0413900 | RBH | 10.9780025 | 5.3383985 | 49.4852195 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0025190 | RBH | 0.0 | 0.112673 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0025150 | RBH | 0.000000 | 14.662068 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0025410 | RBH | 0.000000 | 22.917645 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0025430 | RBH | 0.172653 | 1.013724 | 0.648697 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0025290 | RBH | 0.0 | 7.871344 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G025550 | RBH | 0.0 | 5.436842 | 7.018612 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0025320 | RBH | 0.000000 | 7.749013 | 5.801127 |
