Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g43710 | OGI:01013090 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:25045176-25049414 | ||||||||
| Gene Symbol | CYP72A18, OsCYP72A18 | ||||||||||
| DNA seq | TTTACTCTGCTTCATCTACTTATTCCATTTTCTTCATGGCCCCGAGTGGGAACGGTGTACAATAATGCACCAGCGAGATGCAAACTCTTCATGTTATTGGCCATAAGAGAGGAGCCTGCCCTACAGCTGATAAGCTGTGTCATTACAATGGGTAACGAACAATGATCAGCTCGTAGTCTCGGTAGTTGGATGACCTTGAAAGACCGAAACACTCGCACCTTTGAGTCGTCTGTCGAAGCCCAGCGGAGTTGGTTGAAGACTTGAAGCAATCACAAAGAAGGGGTTTTGTTCTTGCGAACCGCAGATTTGGTGGAAATCCTGTGGGACGTACCTGCCGGTGCCTAGAAGACCTGCTCTGTTTTCACAATGGCTGGTGTCACTATGTAATGATTGTGTTGTGATATATTTTACTGTTTTCGAGAGGTATCAAAAGGTATTAAAATTTTTAATGCAAATTTTTCATATGTCATTGTATTAGAGAGATTAAATTTTACACTATAAAATATGATACATCCTCAAGAGCCTAAAAATCACTCTTGTATTGTATTAAAAACTCGGAATATTATTTCACTCACCATGTTTTTATCTGCATAAAAGCTAGTATATCAATAAGTAAAATCTTTCTAGTTCGAATACGAAACCTGTAGACTACCTCTGTTTACAAAAGAGAAAGATATATAACTTATCAAACTGACTTGTTTCTCCTTGACCAATCCGAGCAAGTGAGCAGCATGGTTAGATTTTCTTCAGCTTAATTTGTGCACCATGCTGTGGGTGGAGAGTTATCACAGTGAATGGTGCGTGGATGTACGATGGTGAAAGCTCAAAGGAGAACCGCTGAAGGATTGTACAGATAGCCATCTTGGCTTCCAATAGTGCAAAGTTCTGGCCGATGCAGATTCGGGGACCCCATCCAAATGGAAAGAAAGAGGTCTGATACTTCGTTGCGTTGGAGATGCCATCAGCAAACCTCCCTGGATTGAATTCACCTGCATCTTTTCCCCAAATATCGGGATCATGGTGAATAAATAAAATGGGCAACATAAGGGTCACTTCAGCGGGATATTTGATGCCGCCGAGCTCCATTTCCTTGTATGTTCGTCTGGTCAAGAACACCACTGGCGGATACAACCTAAGAACCTCGTACAGAATCATTGTTACCTGCAGTAACAAAACAGAGATCATGACTGTTGTTAATTAATCTGAAATTAAAACGCATTTGCTTCAAATAAATCCTTGCTTAATCTAACAATCAGAATCTTTTATTCACTTACATATATTGGCAATTCAACCCCCCTCAATTTTATTACCGGTGATAACTGATAAAGCTTTAAAATAACATCATCTGAACTGTATGGAAAAAAAAAACATTCTAGAAGCATATGGAAAATACATGGCATAAGCTCCTGTTACTTTTGGTGACAAATAGTTATCATTTCAACGCAATATTTTCAGATTTTATATAAGTAACTGATCAAAACAAATCCAGTACAAACTTAGTGTCTTAATTAATAGACTGCATTTTGCATATTTGGCAAAATAAGAGAACAGTGTTCATCTTATACTTACAATCTTCAGACGACTTAAGCTATCATAGTCTGGTGTGGTTCTTCCAAAGTGGTGTAGCACTTCTTCTCTTGCTCGCTCTTGCCACTCTGGGTGCATACTTAGCACAATTAATGTCCAAGTGAGCAATACTGATGTTGTCTCCATTCCTGCAAAATAAAATAGCTTGCATTCCTCAATAATTTCGTCCGTAGTCATTCCTAGTTCTGCTTTCCCATTTGACTCCCTCATATTTGACTCCACCAATAAGCCCAACAAGTCACCATTACTGGTTTCACCATTTTTAATAGCCCGCTCTCTCTTTCCAATTATTCCTCGTAGAAGTTTGCTGACCTCTCTTTCAATTTCTCTCAACCTTCTGTTGTTTTTAGTTGGTAAGAACCTGTAAAATTTTCAATCATGCAAGAGTAAACTCTCAATTGCTACTGTATAAATTTAGCTTAGTCTAAAAAAATGTATACGTAGACTCTTCTTGCAATCATTCAAATTGCACTGATATGTATTATTAGTTCTACCTTCCGAAGTAGTACCGAAGTACTTAGAGGATGTACCATATTTTGGTATATTCCAAGTCATAATTGTCGTACCATTGATACATTTATAAAAGGACTGTTAAAGAACTAATTCATCAAACAAAAGAAATGAAAAACTGCATTTTGTTCTCATCAGTGTGTGTTTTCTATTATCTGAAAACTTGCATGTGCTCAGACTGCAAAATTTTCTTCTAAACCAAAGATCGAATATATCTTTTTGTCTGACTCTTGGCTCACATGTCAACTGGCAATGACTGCCATATTCTGAATGATTTTTCAGCATATTATTGTTTTCCCCTGTATCTAAAAACATGACTGAAGGTTATACTTTAATTTCACAATCCTCAGAGGGGCATTTTTGACAACGGTTTTCGGCAACTGTAATATATCACATAAGTACTAAATAAAGATATTATATAACTCATAGGATTGTTCGTAAGATATTTGATATGCATGTCCAAATGATTTCTTTTATAGTGTAAGAAGAAAGAACAAACCAATATCCTGGTATAAAAATTGTCCGAAAGGCTTGTATTATGCGTTCGGCTGACTCTGCTTGCAGCTGAAAAATTCTCCTTCCTTCCTCATAGCTGCTACCGAATGCTGTCTTTGATATGACATCTCCTGTAAGATTTTGGAACTCAGGCCAAACATCTACCTCTGACATTCCTTCAATAGACATTGAATTCTCCCATCTTGTAACCATTTCCGTGCAGCAGTTAGAAAAAACTGGCAGCATCCGCTGTGAACGAGACAACATTGTTAGCCAACTTTGGTACATTACCCAATAAGAAATATGGAATGCTGCAATCTAAAAGTGATAAAATGAATTTCACCTTTATTTTCTCGTGGTGAAAGGCAGGATTCAGAATTCTCCGGTGCTTTGCCCATTTCTCGCCTTCATAGCTTACAACTCCGGAGGCTAGCAACTTTCCGAGACGGGTAGGCTTTGGTTTGCCATAGTGGCCAAACTTATTAGACATAACTTCCCTTATTGATTCAGGGTCTGAAATCATCACTCTTGGCGTTGGGCCAAACCAAGTGAATGATGGTTTCCCTGCAGTTACGTTTTCAATCCCATTAAAAGGTGCAAGGAGACTGAAAACTATACCCAACATGTGTAGGTGACAATCTTAATCAAAGCGCACATTCCAATTAGACAGTAGCTCTTGTCAACCATATGCACATGATTATTCCACATGAACATACATCCTCAACATTTTGTTTTACATCAACTTCAAATGTTTTTCCCCCAAAATATTAAGAACATACTCCCTCCGTTTCGAAATGTTTGACGCCGTTGACTTTTTATCATATGTTTGACCGTTCGTCTTATTCAAAAAATTTAAGTAATTATTAATTATTTTTCTATCATTTAATTCATTGTTAAATATATTTTTATGTAGGCATATAATTTTACATATCTCACAAAAATTTTTGAATAAGACGAACGGTCAAACATGTGCTAAAAAGTCAACGGTGTCAAACATTTCGAAACGAAGGGAGTATATTGGAACAAGAAGCGGTAAGATCTCTTTTTGAAAATTAGAAGAACTTTACTGTTTCCTAAAAGGGTAAAATCCGAAGCTAATCTGCAAGCACGATCTCAACTCCGATTAGCCTTTTATGTACCATCAGATGTTAGCTCAGTACTGTTTCGTATTAAAACTGGAAATTCGCTGGAGGGAGAGGACTATACCGTGCTCCTCAACGGCTTTGCTGAACATCGGCAGCACGCGCGGGATGATGTCGTGGCAGCCGAGCGGCAGCGGCTTCTTCCGGGCCTCCCGGTTGAGCCGGACGTTCTCCGGCACGTCGCCGGTGAAGAGGCGGTACCGGTTGCCCCGGATGCCCTGCGCCCGGAGGGCGCGCTCCAGCCGCCGCGGCGTCCACCAGGCCCACTCCAGCGTCGACACGGCCAGCCACAGCAGCGCCGCCACGGCCGCCGCCGCGGCGGCGGCCAGGATCCACTGGGAGGCCGCCCCTAGCATCATCAGCATCAGCAGAGGCGGCGGCAGCGCCTCCTCCCTCGCGGGCCGCTCGCCGGTGGCGCGGTGGGGTGAGAGGAAAGCAGAGGCGTACGGTACGGCTGCACAGGACCACAGGTGATCCGCGAAACCGTATAGCCGATATTGTTGAT
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| CDS seq | ATGCTGATGATGCTAGGGGCGGCCTCCCAGTGGATCCTGGCCGCCGCCGCGGCGGCGGCCGTGGCGGCGCTGCTGTGGCTGGCCGTGTCGACGCTGGAGTGGGCCTGGTGGACGCCGCGGCGGCTGGAGCGCGCCCTCCGGGCGCAGGGCATCCGGGGCAACCGGTACCGCCTCTTCACCGGCGACGTGCCGGAGAACGTCCGGCTCAACCGGGAGGCCCGGAAGAAGCCGCTGCCGCTCGGCTGCCACGACATCATCCCGCGCGTGCTGCCGATGTTCAGCAAAGCCGTTGAGGAGCACGGGAAACCATCATTCACTTGGTTTGGCCCAACGCCAAGAGTGATGATTTCAGACCCTGAATCAATAAGGGAAGTTATGTCTAATAAGTTTGGCCACTATGGCAAACCAAAGCCTACCCGTCTCGGAAAGTTGCTAGCCTCCGGAGTTGTAAGCTATGAAGGCGAGAAATGGGCAAAGCACCGGAGAATTCTGAATCCTGCCTTTCACCACGAGAAAATAAAGCGGATGCTGCCAGTTTTTTCTAACTGCTGCACGGAAATGGTTACAAGATGGGAGAATTCAATGTCTATTGAAGGAATGTCAGAGGTAGATGTTTGGCCTGAGTTCCAAAATCTTACAGGAGATGTCATATCAAAGACAGCATTCGGTAGCAGCTATGAGGAAGGAAGGAGAATTTTTCAGCTGCAAGCAGAGTCAGCCGAACGCATAATACAAGCCTTTCGGACAATTTTTATACCAGGATATTGGTTCTTACCAACTAAAAACAACAGAAGGTTGAGAGAAATTGAAAGAGAGGTCAGCAAACTTCTACGAGGAATAATTGGAAAGAGAGAGCGGGCTATTAAAAATGGTGAAACCAGTAATGGTGACTTGTTGGGCTTATTGGTGGAGTCAAATATGAGGGAGTCAAATGGGAAAGCAGAACTAGGAATGACTACGGACGAAATTATTGAGGAATGCAAGCTATTTTATTTTGCAGGAATGGAGACAACATCAGTATTGCTCACTTGGACATTAATTGTGCTAAGTATGCACCCAGAGTGGCAAGAGCGAGCAAGAGAAGAAGTGCTACACCACTTTGGAAGAACCACACCAGACTATGATAGCTTAAGTCGTCTGAAGATTGTAACAATGATTCTGTACGAGGTTCTTAGGTTGTATCCGCCAGTGGTGTTCTTGACCAGACGAACATACAAGGAAATGGAGCTCGGCGGCATCAAATATCCCGCTGAAGTGACCCTTATGTTGCCCATTTTATTTATTCACCATGATCCCGATATTTGGGGAAAAGATGCAGGTGAATTCAATCCAGGGAGGTTTGCTGATGGCATCTCCAACGCAACGAAGTATCAGACCTCTTTCTTTCCATTTGGATGGGGTCCCCGAATCTGCATCGGCCAGAACTTTGCACTATTGGAAGCCAAGATGGCTATCTGTACAATCCTTCAGCGGTTCTCCTTTGAGCTTTCACCATCGTACATCCACGCACCATTCACTGTGATAACTCTCCACCCACAGCATGGTGCACAAATTAAGCTGAAGAAAATCTAA
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| Protein seq | MLMMLGAASQWILAAAAAAAVAALLWLAVSTLEWAWWTPRRLERALRAQGIRGNRYRLFTGDVPENVRLNREARKKPLPLGCHDIIPRVLPMFSKAVEEHGKPSFTWFGPTPRVMISDPESIREVMSNKFGHYGKPKPTRLGKLLASGVVSYEGEKWAKHRRILNPAFHHEKIKRMLPVFSNCCTEMVTRWENSMSIEGMSEVDVWPEFQNLTGDVISKTAFGSSYEEGRRIFQLQAESAERIIQAFRTIFIPGYWFLPTKNNRRLREIEREVSKLLRGIIGKRERAIKNGETSNGDLLGLLVESNMRESNGKAELGMTTDEIIEECKLFYFAGMETTSVLLTWTLIVLSMHPEWQERAREEVLHHFGRTTPDYDSLSRLKIVTMILYEVLRLYPPVVFLTRRTYKEMELGGIKYPAEVTLMLPILFIHHDPDIWGKDAGEFNPGRFADGISNATKYQTSFFPFGWGPRICIGQNFALLEAKMAICTILQRFSFELSPSYIHAPFTVITLHPQHGAQIKLKKI |
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| Function | Cytochrome P450 72A15 [UniProtKB/Swiss-Prot:Q9LUC5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g43710 | LOC_Os01g43710.1 | Chr01 | 25045176 | 25049414 | - | MSU_osa1r7 | ||
| CDS seq | ATGCTGATGATGCTAGGGGCGGCCTCCCAGTGGATCCTGGCCGCCGCCGCGGCGGCGGCCGTGGCGGCGCTGCTGTGGCTGGCCGTGTCGACGCTGGAGTGGGCCTGGTGGACGCCGCGGCGGCTGGAGCGCGCCCTCCGGGCGCAGGGCATCCGGGGCAACCGGTACCGCCTCTTCACCGGCGACGTGCCGGAGAACGTCCGGCTCAACCGGGAGGCCCGGAAGAAGCCGCTGCCGCTCGGCTGCCACGACATCATCCCGCGCGTGCTGCCGATGTTCAGCAAAGCCGTTGAGGAGCACGGGAAACCATCATTCACTTGGTTTGGCCCAACGCCAAGAGTGATGATTTCAGACCCTGAATCAATAAGGGAAGTTATGTCTAATAAGTTTGGCCACTATGGCAAACCAAAGCCTACCCGTCTCGGAAAGTTGCTAGCCTCCGGAGTTGTAAGCTATGAAGGCGAGAAATGGGCAAAGCACCGGAGAATTCTGAATCCTGCCTTTCACCACGAGAAAATAAAGCGGATGCTGCCAGTTTTTTCTAACTGCTGCACGGAAATGGTTACAAGATGGGAGAATTCAATGTCTATTGAAGGAATGTCAGAGGTAGATGTTTGGCCTGAGTTCCAAAATCTTACAGGAGATGTCATATCAAAGACAGCATTCGGTAGCAGCTATGAGGAAGGAAGGAGAATTTTTCAGCTGCAAGCAGAGTCAGCCGAACGCATAATACAAGCCTTTCGGACAATTTTTATACCAGGATATTGGTTCTTACCAACTAAAAACAACAGAAGGTTGAGAGAAATTGAAAGAGAGGTCAGCAAACTTCTACGAGGAATAATTGGAAAGAGAGAGCGGGCTATTAAAAATGGTGAAACCAGTAATGGTGACTTGTTGGGCTTATTGGTGGAGTCAAATATGAGGGAGTCAAATGGGAAAGCAGAACTAGGAATGACTACGGACGAAATTATTGAGGAATGCAAGCTATTTTATTTTGCAGGAATGGAGACAACATCAGTATTGCTCACTTGGACATTAATTGTGCTAAGTATGCACCCAGAGTGGCAAGAGCGAGCAAGAGAAGAAGTGCTACACCACTTTGGAAGAACCACACCAGACTATGATAGCTTAAGTCGTCTGAAGATTGTAACAATGATTCTGTACGAGGTTCTTAGGTTGTATCCGCCAGTGGTGTTCTTGACCAGACGAACATACAAGGAAATGGAGCTCGGCGGCATCAAATATCCCGCTGAAGTGACCCTTATGTTGCCCATTTTATTTATTCACCATGATCCCGATATTTGGGGAAAAGATGCAGGTGAATTCAATCCAGGGAGGTTTGCTGATGGCATCTCCAACGCAACGAAGTATCAGACCTCTTTCTTTCCATTTGGATGGGGTCCCCGAATCTGCATCGGCCAGAACTTTGCACTATTGGAAGCCAAGATGGCTATCTGTACAATCCTTCAGCGGTTCTCCTTTGAGCTTTCACCATCGTACATCCACGCACCATTCACTGTGATAACTCTCCACCCACAGCATGGTGCACAAATTAAGCTGAAGAAAATCTAA
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| Protein seq | MLMMLGAASQWILAAAAAAAVAALLWLAVSTLEWAWWTPRRLERALRAQGIRGNRYRLFTGDVPENVRLNREARKKPLPLGCHDIIPRVLPMFSKAVEEHGKPSFTWFGPTPRVMISDPESIREVMSNKFGHYGKPKPTRLGKLLASGVVSYEGEKWAKHRRILNPAFHHEKIKRMLPVFSNCCTEMVTRWENSMSIEGMSEVDVWPEFQNLTGDVISKTAFGSSYEEGRRIFQLQAESAERIIQAFRTIFIPGYWFLPTKNNRRLREIEREVSKLLRGIIGKRERAIKNGETSNGDLLGLLVESNMRESNGKAELGMTTDEIIEECKLFYFAGMETTSVLLTWTLIVLSMHPEWQERAREEVLHHFGRTTPDYDSLSRLKIVTMILYEVLRLYPPVVFLTRRTYKEMELGGIKYPAEVTLMLPILFIHHDPDIWGKDAGEFNPGRFADGISNATKYQTSFFPFGWGPRICIGQNFALLEAKMAICTILQRFSFELSPSYIHAPFTVITLHPQHGAQIKLKKI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 11.531143 | 8.124890 | 2.451488 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0627500 | RBH | 20.765593 | 15.162479 | 11.642665 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0627500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0026010 | SBH | 0.380584 | 1.018520 | 0.660300 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0025620 | SBH | 1.560648 | 6.911301 | 5.147695 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0025980 | SBH | 0.343233 | 0.0 | 1.553312 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0025260 | RBH | 1.805432 | 0.984105 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0025010 | SBH | 30.947676 | 29.418953 | 13.138362 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0420900 | SBH | 12.2575155 | 6.776026 | 0.45269 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0024680 | SBH | 0.875078 | 1.099321 | 1.883906 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0409700 | RBH | 14.431593 | 13.095633 | 1.0822765 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0024960 | SBH | 1.122906 | 0.108676 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0024950 | RBH | 1.926548 | 10.912550 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0025190 | SBH | 26.054064 | 36.592171 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0025200 | RBH | 0.0 | 0.301883 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0025070 | SBH | 0.619845 | 0.796476 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G025330 | RBH | 2.755760 | 2.189533 | 4.414992 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0025100 | SBH | 0.0 | 0.000000 | 0.227597 |
