Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g42990 | OGI:01075960 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:24484549-24487831 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGCCACCGCCGCCGTCTTCTCCGCCTCGGCCCGCCGCCTCCTCTCCACCGTCGCCGGCGGCGCCGGGGCCGGATCCGCCGCCGAGCTCCCCGTCTTGATTGGCCACCTCCGCAGCCTCGCCCGCGCGGGCCGCCTCGCCGACATCGACGCCGCCCTCGCGCCGCACCTGGCGTCCCACTCCGTCGCGGCGGTCTCCGCCCTCTCCTCGGTGGGCCTCCCCGACCGCGCCTCCGCGCTCCTCGCCACCATCCGGAACCCAACCGCCGCGCACCTCAACGCGCTCCTGGCCCCGCTCCTCCGCCGCCACCGCCTCGTGGGCCTCATCCCCACCCTCCTCGCGGCGCACCCCTCCGTCCCGCGCGACGACGCCACGGAGGGCATCCACGCCAAGGCCCTCTGCATCGCCACCGGCGCCGACTCCGCGCTCCACCTCCTCCAGCGGGAGTCGCCGCCGCCGTCCCTCCAGCTCTTCACCAGCGTCATCGACTCCTACTATAAGCAGCGCAAGCCCCACCGCGCCGAGCAGCTGTGGCGCGAGATGGTCGAGGACCACGGCATCGTCCCCGACGCCGCCGCCCACAACGTCAGGATCACCTACAAGGCCGCCACCGGCACGGTGGAGGAGGTCAAGGAGCTGATCCGCGCCATGCGCGAGGATGCCGGCCTCCAGCCGGACATCGTCTCCCACAACGGGCTGATGCGCGCGATGGCGCGGCACGGGAGGGTGGACGAGATGATGGAGGTGTACAAGAGGCTGGAGAAGGGTAGCGCCTCCGCCGCGGCGGAGGGCAAGTCGGCGCCGGACTGCGCGACGTACACCTGCGTGGTGGCCGCGCTGTGCAAGGCGGGGCGGTGGTCGGAGGCGGACGACGTGTTCTACGAGGCGGTGAAGCGGAGGAAGCTGGCCGACCTCGGGACGGCGCGCGTTCTGGTGCGAGGCCTCAAGGAGGCCGGCAAGGGGCGGGCGGCGAGGCGGGTGGTGATCGGGCTGCGCAAGAAGTTCCCCGACCGCTTCGACGGCCCGTGGAAGGATCTCGAGGAGTTGGCCGGGATCGCCGGCGAGGATGAGGAGAGCGATGTCGAAGGGGAGGACGACGAGCAGCCGCCGGCGACGACGACGACCACTGCCGCGTGAGCTCTCGCAGTAATTTGGTCGTGTTCGTGGTTTTAGCAAATTTGCATTCGTGGTAATACGAAGACCATATAATGGTTTAGGATTTTAGGGCTGGATCAATAAGAAGCAAATTCTGAGGATGCGAGAATCACTCAAATTTTGTCAAACTAGCTTCTTGAATCACACCATAAAACTTCTTTAATGTGATGTCTCGTTGTAATGATTGATCTTGTTTCTACATCTGATGGCTTTGTTTTGTTTCCACTAATTTCACTCACAAATACTTTTGGATGCTGCTGGCTATTTGGTAATTGCCAATTTGATCAAATCATGCAGAAAAAGCTACTCCATCCGCACTAAAATATACATGACCGGATTAGATAGGCTCCCTGTCCACGCTCTAAAATGTACAATCGATTTACGACCGGATTAGATAGGCTCGTTGTCCAGACTATTGTTACTGTCAAATTCGATAGTACTAGGATTCTAGATTACTGCCAAATTCGATACTAGATTGTCATTTACGGCTGGGTTGGAGTATTAGTTCGTTCTTAGGTTAAACACATCTCCCATCCTCGAACTTGGCACGGTAAGTTTAGTTTTGTGCCTACATTAGAGAGGAAGATGGCAAAAGCTTACGCAATCGACGCTTAATTACAAGTTGTTGACGATGTGAGTGATAATGAGTTTTCTGTTAGAGGAAATGCGCCATGTTTCTCACCTTTAAGCGCATGTTAGGATATCTTGCTTTTTAGCATAAGCTGCACATTGTTTTCTGGAAAAAGTACACCGAAGCTCCCTCAACTTGTCATCGAGTTACAAAATCGTCCTCGAACCACAAAACTGGATAAGTAGATCCCTCGGTGGTTTTGACTCCGATTTTATCCGACGTAGCAGCTGACTCAGCGTGGATCCCACGTGCCAGCCTCCTCTTCACTCCTCTCCACCTCTCCCTCTCTCCTCTTCTTTTCTCACCAGCAGAACAGCGACAGCCGGCGGGTGGGGAGGTCCGGGAGGAGGCCGGTGGGGGAGGCGGGAGTCCGGCGGCGGCGGGCCCGCGCGGATGGATTTGGGCGGCTGCATCGGCTTCGCGGGGGGCAGCCTTCATCGCCCTCTTGGCGCGGGCGGGGCGAGGGGGGAACTGCGCGCCTTCTTCTCCCACTTGGCAGACGCCGCCGCCGCCGACGACGCGGCTTCTTAGCGGCGGCGGAGGGGCGCGGGGTCCTCTTCCTCTTGGCGCCGACGACGCCCTTGGCGGCCGGGCTGCGGGCAGCGAAGCAGAGACAGGCGAGCGCGGCGGACGAGTTCGCCGTTCAGTGAGGGAGGCTGCCGAGGAGAAGAAGGCGACGGCGGCCAGGTCCAAGGCCAAGACGGCCGCCAAGGCCAAAGCTGAGCAAAGCTCCGGCCGCGACCGCGAGCAAGATGACCATGGAGCCAAGCCGCTCGCGCCTCCCTCTCCTCCACCACTTCTCGCTGCTCGCCTCGCTGTGTTCCGCGCGGTGGCGAGACGACAGCCGCGGCTTCCTCTGGTACCCCGCCCCGCGCCCCCCTCGGCGTGGCCCGCTTGCTATCGTAGTCTACGCTCATGACGAGACGGCCATGTCGCTGGAGCAGGAGGTAGAGCTTGCAACTTATATGTTTAGTGATGCTGCTTGGAGTTTCCAACTTTCCTGAATTGATGTTGTTATGGTCTGGTTGCAGGATTGGGAGATCAATGGCATAGACAGATCGGGTTTGGATGCTCAGGTTGCTGAGGGTGCTCCTAGCCTGCTGTATTTGTTGTCTTGTGCTATGTTCAGCATACAGTGCTAATCTAGTGCAAATCGCCTCGCCGCGGACGCTCCGCCCTGTGCTGGTGCTCACGCCGGTCACCGCTGACGAGGTGCGCGCCTACGTCGTCTGCTGCCGCGACCACGGCCTCACCGTCCGCGCGCGCAGCGGCGGGCACGACTACGAGGGCCTCTCGTACTGCTCGCTCCGGCCGTCCGGCGACGGCGAGGGGGCAGCACGTTTCGCCGTCGTCGACGTCGCCGCGCTCCAGGCGGTGCGGGTGGACGCGGCGAGGGGAGTGGCGCGCACCAAGGCGGGGGCCACGCGCGCCGTCTGCCGCATCGGCGCCGCTGGACTCCCGCCTCCCCCACCGGTCTCCTCCGGAAGCAGATCTTAG
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| CDS seq | ATGGCCACCGCCGCCGTCTTCTCCGCCTCGGCCCGCCGCCTCCTCTCCACCGTCGCCGGCGGCGCCGGGGCCGGATCCGCCGCCGAGCTCCCCGTCTTGATTGGCCACCTCCGCAGCCTCGCCCGCGCGGGCCGCCTCGCCGACATCGACGCCGCCCTCGCGCCGCACCTGGCGTCCCACTCCGTCGCGGCGGTCTCCGCCCTCTCCTCGGTGGGCCTCCCCGACCGCGCCTCCGCGCTCCTCGCCACCATCCGGAACCCAACCGCCGCGCACCTCAACGCGCTCCTGGCCCCGCTCCTCCGCCGCCACCGCCTCGTGGGCCTCATCCCCACCCTCCTCGCGGCGCACCCCTCCGTCCCGCGCGACGACGCCACGGAGGGCATCCACGCCAAGGCCCTCTGCATCGCCACCGGCGCCGACTCCGCGCTCCACCTCCTCCAGCGGGAGTCGCCGCCGCCGTCCCTCCAGCTCTTCACCAGCGTCATCGACTCCTACTATAAGCAGCGCAAGCCCCACCGCGCCGAGCAGCTGTGGCGCGAGATGGTCGAGGACCACGGCATCGTCCCCGACGCCGCCGCCCACAACGTCAGGATCACCTACAAGGCCGCCACCGGCACGGTGGAGGAGGTCAAGGAGCTGATCCGCGCCATGCGCGAGGATGCCGGCCTCCAGCCGGACATCGTCTCCCACAACGGGCTGATGCGCGCGATGGCGCGGCACGGGAGGGTGGACGAGATGATGGAGGTGTACAAGAGGCTGGAGAAGGGTAGCGCCTCCGCCGCGGCGGAGGGCAAGTCGGCGCCGGACTGCGCGACGTACACCTGCGTGGTGGCCGCGCTGTGCAAGGCGGGGCGGTGGTCGGAGGCGGACGACGTGTTCTACGAGGCGGTGAAGCGGAGGAAGCTGGCCGACCTCGGGACGGCGCGCGTTCTGGTGCGAGGCCTCAAGGAGGCCGGCAAGGGGCGGGCGGCGAGGCGGGTGGTGATCGGGCTGCGCAAGAAGTTCCCCGACCGCTTCGACGGCCCGTGGAAGGATCTCGAGGAGTTGGCCGGGATCGCCGGCGAGGATGAGGAGAGCGATGTCGAAGGGGAGGACGACGAGCAGCCGCCGGCGACGACGACGACCACTGCCGCGTTAAACACATCTCCCATCCTCGAACTTGGCACGACGCCGCCGCCGCCGACGACGCGGCTTCTTAGCGGCGGCGGAGGGGCGCGGGGTCCTCTTCCTCTTGGCGCCGACGACGCCCTTGGCGGCCGGGCTGCGGGCAGCGAAGCAGAGACAGGCGAGCGCGGCGGACGAGTTCGCCGTTCAGTGAGGGAGGCTGCCGAGGAGAAGAAGGCGACGGCGGCCAGGTCCAAGGCCAAGACGGCCGCCAAGGCCAAAGCTGAGCAAAGCTCCGGCCGCGACCGCGAGCAAGATGACCATGGAGCCAAGCCGCTCGCGCCTCCCTCTCCTCCACCACTTCTCGCTGCTCGCCTCGCTGTGTTCCGCGCGGTGGCGAGACGACAGCCGCGGCTTCCTCTGGATTGGGAGATCAATGGCATAGACAGATCGGGTTTGGATGCTCAGGTTGCTGAGGCATACAGTGCTAATCTAGTGCAAATCGCCTCGCCGCGGACGCTCCGCCCTGTGCTGGTGCTCACGCCGGTCACCGCTGACGAGGTGCGCGCCTACGTCGTCTGCTGCCGCGACCACGGCCTCACCGTCCGCGCGCGCAGCGGCGGGCACGACTACGAGGGCCTCTCGTACTGCTCGCTCCGGCCGTCCGGCGACGGCGAGGGGGCAGCACGTTTCGCCGTCGTCGACGTCGCCGCGCTCCAGGCGGTGCGGGTGGACGCGGCGAGGGGAGTGGCGCGCACCAAGGCGGGGGCCACGCGCGCCGTCTGCCGCATCGGCGCCGCTGGACTCCCGCCTCCCCCACCGGTCTCCTCCGGAAGCAGATCTTAG
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| Protein seq | MATAAVFSASARRLLSTVAGGAGAGSAAELPVLIGHLRSLARAGRLADIDAALAPHLASHSVAAVSALSSVGLPDRASALLATIRNPTAAHLNALLAPLLRRHRLVGLIPTLLAAHPSVPRDDATEGIHAKALCIATGADSALHLLQRESPPPSLQLFTSVIDSYYKQRKPHRAEQLWREMVEDHGIVPDAAAHNVRITYKAATGTVEEVKELIRAMREDAGLQPDIVSHNGLMRAMARHGRVDEMMEVYKRLEKGSASAAAEGKSAPDCATYTCVVAALCKAGRWSEADDVFYEAVKRRKLADLGTARVLVRGLKEAGKGRAARRVVIGLRKKFPDRFDGPWKDLEELAGIAGEDEESDVEGEDDEQPPATTTTTAALNTSPILELGTTPPPPTTRLLSGGGGARGPLPLGADDALGGRAAGSEAETGERGGRVRRSVREAAEEKKATAARSKAKTAAKAKAEQSSGRDREQDDHGAKPLAPPSPPPLLAARLAVFRAVARRQPRLPLDWEINGIDRSGLDAQVAEAYSANLVQIASPRTLRPVLVLTPVTADEVRAYVVCCRDHGLTVRARSGGHDYEGLSYCSLRPSGDGEGAARFAVVDVAALQAVRVDAARGVARTKAGATRAVCRIGAAGLPPPPPVSSGSRS |
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| Function | Pentatricopeptide repeat-containing protein At4g36680, mitochondrial [UniProtKB/Swiss-Prot:Q9M065] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g42990 | LOC_Os01g42990.1 | Chr01 | 24484549 | 24487831 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCCACCGCCGCCGTCTTCTCCGCCTCGGCCCGCCGCCTCCTCTCCACCGTCGCCGGCGGCGCCGGGGCCGGATCCGCCGCCGAGCTCCCCGTCTTGATTGGCCACCTCCGCAGCCTCGCCCGCGCGGGCCGCCTCGCCGACATCGACGCCGCCCTCGCGCCGCACCTGGCGTCCCACTCCGTCGCGGCGGTCTCCGCCCTCTCCTCGGTGGGCCTCCCCGACCGCGCCTCCGCGCTCCTCGCCACCATCCGGAACCCAACCGCCGCGCACCTCAACGCGCTCCTGGCCCCGCTCCTCCGCCGCCACCGCCTCGTGGGCCTCATCCCCACCCTCCTCGCGGCGCACCCCTCCGTCCCGCGCGACGACGCCACGGAGGGCATCCACGCCAAGGCCCTCTGCATCGCCACCGGCGCCGACTCCGCGCTCCACCTCCTCCAGCGGGAGTCGCCGCCGCCGTCCCTCCAGCTCTTCACCAGCGTCATCGACTCCTACTATAAGCAGCGCAAGCCCCACCGCGCCGAGCAGCTGTGGCGCGAGATGGTCGAGGACCACGGCATCGTCCCCGACGCCGCCGCCCACAACGTCAGGATCACCTACAAGGCCGCCACCGGCACGGTGGAGGAGGTCAAGGAGCTGATCCGCGCCATGCGCGAGGATGCCGGCCTCCAGCCGGACATCGTCTCCCACAACGGGCTGATGCGCGCGATGGCGCGGCACGGGAGGGTGGACGAGATGATGGAGGTGTACAAGAGGCTGGAGAAGGGTAGCGCCTCCGCCGCGGCGGAGGGCAAGTCGGCGCCGGACTGCGCGACGTACACCTGCGTGGTGGCCGCGCTGTGCAAGGCGGGGCGGTGGTCGGAGGCGGACGACGTGTTCTACGAGGCGGTGAAGCGGAGGAAGCTGGCCGACCTCGGGACGGCGCGCGTTCTGGTGCGAGGCCTCAAGGAGGCCGGCAAGGGGCGGGCGGCGAGGCGGGTGGTGATCGGGCTGCGCAAGAAGTTCCCCGACCGCTTCGACGGCCCGTGGAAGGATCTCGAGGAGTTGGCCGGGATCGCCGGCGAGGATGAGGAGAGCGATGTCGAAGGGGAGGACGACGAGCAGCCGCCGGCGACGACGACGACCACTGCCGCGTTAAACACATCTCCCATCCTCGAACTTGGCACGACGCCGCCGCCGCCGACGACGCGGCTTCTTAGCGGCGGCGGAGGGGCGCGGGGTCCTCTTCCTCTTGGCGCCGACGACGCCCTTGGCGGCCGGGCTGCGGGCAGCGAAGCAGAGACAGGCGAGCGCGGCGGACGAGTTCGCCGTTCAGTGAGGGAGGCTGCCGAGGAGAAGAAGGCGACGGCGGCCAGGTCCAAGGCCAAGACGGCCGCCAAGGCCAAAGCTGAGCAAAGCTCCGGCCGCGACCGCGAGCAAGATGACCATGGAGCCAAGCCGCTCGCGCCTCCCTCTCCTCCACCACTTCTCGCTGCTCGCCTCGCTGTGTTCCGCGCGGTGGCGAGACGACAGCCGCGGCTTCCTCTGGATTGGGAGATCAATGGCATAGACAGATCGGGTTTGGATGCTCAGGTTGCTGAGGCATACAGTGCTAATCTAGTGCAAATCGCCTCGCCGCGGACGCTCCGCCCTGTGCTGGTGCTCACGCCGGTCACCGCTGACGAGGTGCGCGCCTACGTCGTCTGCTGCCGCGACCACGGCCTCACCGTCCGCGCGCGCAGCGGCGGGCACGACTACGAGGGCCTCTCGTACTGCTCGCTCCGGCCGTCCGGCGACGGCGAGGGGGCAGCACGTTTCGCCGTCGTCGACGTCGCCGCGCTCCAGGCGGTGCGGGTGGACGCGGCGAGGGGAGTGGCGCGCACCAAGGCGGGGGCCACGCGCGCCGTCTGCCGCATCGGCGCCGCTGGACTCCCGCCTCCCCCACCGGTCTCCTCCGGAAGCAGATCTTAG
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| Protein seq | MATAAVFSASARRLLSTVAGGAGAGSAAELPVLIGHLRSLARAGRLADIDAALAPHLASHSVAAVSALSSVGLPDRASALLATIRNPTAAHLNALLAPLLRRHRLVGLIPTLLAAHPSVPRDDATEGIHAKALCIATGADSALHLLQRESPPPSLQLFTSVIDSYYKQRKPHRAEQLWREMVEDHGIVPDAAAHNVRITYKAATGTVEEVKELIRAMREDAGLQPDIVSHNGLMRAMARHGRVDEMMEVYKRLEKGSASAAAEGKSAPDCATYTCVVAALCKAGRWSEADDVFYEAVKRRKLADLGTARVLVRGLKEAGKGRAARRVVIGLRKKFPDRFDGPWKDLEELAGIAGEDEESDVEGEDDEQPPATTTTTAALNTSPILELGTTPPPPTTRLLSGGGGARGPLPLGADDALGGRAAGSEAETGERGGRVRRSVREAAEEKKATAARSKAKTAAKAKAEQSSGRDREQDDHGAKPLAPPSPPPLLAARLAVFRAVARRQPRLPLDWEINGIDRSGLDAQVAEAYSANLVQIASPRTLRPVLVLTPVTADEVRAYVVCCRDHGLTVRARSGGHDYEGLSYCSLRPSGDGEGAARFAVVDVAALQAVRVDAARGVARTKAGATRAVCRIGAAGLPPPPPVSSGSRS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.381510 | 0.553054 | 0.047838 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0616600 | RBH | 0.703077 | 1.258211 | 0.844979 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g50690 | RBH | 0.225634 | 0.368601 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0616600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0025310 | RBH | 0.388291 | 0.0 | 0.882682 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0024940 | RBH | 0.0 | 0.782112 | 1.268482 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0025260 | RBH | 0.294714 | 0.0 | 1.009506 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0024600 | RBH | 0.0 | 0.163218 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0024330 | RBH | 0.738567 | 4.904963 | 1.398769 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0411500 | RBH | 0.686685 | 2.1795145 | 1.0917785 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0024010 | RBH | 0.112787 | 0.0 | 0.159195 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0400000 | RBH | 2.266087 | 1.9736335 | 10.278282 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0024270 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0024270 | RBH | 0.0 | 6.333616 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0024500 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0024520 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0024390 | RBH | 0.082680 | 2.672013 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G024650 | RBH | 0.0 | 3.795285 | 0.588745 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0024390 | RBH | 0.0 | 0.0 | 1.060586 |
