Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g41730 | OGI:01073630 | 14/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:23624289-23627032 | ||||||||
| Gene Symbol | RLCK41, OsRLCK41 | ||||||||||
| DNA seq | CACATCTCCTCAGATTGGTCTCCCAGAATTCTCTCATCTGGGTTGGGGCTATTGGTTCACTCTCAGGGATTTGGAGGACGCAACAAATGGGTTCTCTGATGACAATATCATAGGAGAGGGCGGCTATGGGGTTGTTTACCACGGTCGTCTTATAAATGGAACTGATGTTGCAATCAAAAGGCTTTTTAACAACATGTAAGAGACACTGAAGTTGATTTTAGCCAAAAAGGAGTGTTTCTTCCGATAATGCTTTTTAATGATTTGCTATGGTTGTTCACTATTGACCATATACTCTGGTTATGGTTTTGCAGAGGGCAGGCAGAAAAAGAGTTCAAGGTTGAAGTTGAGTCTATTGGTCATGTTAGGCACAAGAATCTGGTGCGACTTCTAGGTTACTGCATTGAGGGAAGCTACAGGTAAATCTGTGTTTTGTTAGTTAGCCTTTATATTTTCAGTTGATCGTTCATGGATCTGCAGGAAATTGTATATTTTTCTTGCAGTGACTGCTACAATATGTCCTCTTGCTGTTACACAGCCTTCAATGTCACAAGTCAATTACAACTTAAGAAAGAAACAAAATGTTCAAGTCTGGCAGCTCGACATGGTCATATTTAATCTATTCAGCAAAATATATTAACTGATAATGATACCAAGTACTGGTATAATGGTTAGAATAATCTGTCTTTTTAGATGGTTTATGTACTTAATTATGCAAAGCACTATAGAACTCGAAAAATATGCAAAGGGCCCACTTCAAAGCCTAGAAGTGTCTTTAACTGTTATCCTACTCTAGTATCTGCATATCGTGTTTCCATAGATATGCTTTGGTTCTAAATTTTCTGATTCTGAACCATTTGCTGCAATCCTGAAATCTTAAGTTAGCATCCAGGTAATAAGAAACCTCCACAACGTCAGCTTGGTCTGCTGTTAACTTTGGTACGCAATATTTATCCATGGACCTGATATATTGCTAGAGTTCTAGAAATGGAGAACATTTAAGAGGATCTACCCGCCTTAGTAAAAATGGGTGTTCGGAATGTACACTCACCCCACCAGCTAACTGAACTAGAAGTTTCTGATATTGATAGATTGTCTGCTTTCTTAATCAAACACAATCATATACTGTATAAATGTATTACTACAGAGGCATATTCATAGAACTATAGAAGTCCATTAACCTATATCAAACTAAGCTTTTCCGTGAATCTGTTAGGTTTACAGCAAAACATCATTAGGCTTCTCACGTTGCAGGATGCTTGTCTATGAATACATCAACAATGGGAACTTAGACCAGTGGTTACATGGCGCAAGGAGTCAACATGGTGTTCTTACATGGGAAGCCCGCATGAAAATTATCCTTGACATTGCAAAAGCGTAAGAAATGAACTATCAGTGATTCTGATTTCTCCCTTTGTATATGAGACCAAGCATAAAATTTGTAAACGGAATGCTGTGCAGACTGGCATATTTGCATGAGGGGATAGAGCCAAAAGTTATCCACCGTGATATCAAATCAAGTAATATCCTTATTGATAAAGATTTCACAGGAAAACTTTCTGATTTTGGATTATCTAAGCTCTTACGTGCTGGGAAAAGCCACATTACTACCCGAGTTATGGGAACCTTTGGGTAAGCTACTAAGCTCTCGTTTTAAGTTGTAATTTTCCTGATTGAGTTGCAGGGGCTGTATAAAATACTGATCAACATGAAATTCATGTTTAACTATCTCCAATTCCTTTATTCAAAGTTGATAGCGTCTCAAGCAATTGCCACTTAATCCCCCATTGTTTTCTAGGTACGTAGCCCCTGAATATGCTAATACTGGGCAGCTAAACGAGAAGAGTGACGTCTACAGTTTTGGAGTGCTACTCTTGGAAGCAGTGACCGGAAGGGATCCAGTTAACTATGGTCGACCTACCGATGAGGTGGACATGCACAATCTCATATCTGTCACCCTTGCTGCCCGGTCGCCATTATTTTCTTAATATGGAGTTCTCACATTTAAAAGCAGTAAAACAGTTTATTTCTACATCGACTGAATCTCAGAGCTGTGTGTTGTTCTCTATGCACACGTGGATACTTCAAGCTTCATTTTTTTCCCCCTTCAATAACACAAGACGTGCTGTTTGCAGGTGCACCTGCTGGAGTGGATCAAGCTGATGGCTAGCAGCAGAAGAGCCGAGGAGGTAGTAGACCCTGCGATGGAGGCCAAGCCAACCAAACGGCAGCTGAGGCGCGCGCTCGTGGCTGCCCTCAAGTGCGTCGACCCCAAAGCGGACAAGCGGCCCACGATGGGCAGCGTCGTCCGCATGCTGGAGGCCGATGATGTTGCGCTATCATCACGGCAGGTTTGTTTTTAGCATCTTCTTTATTTTGTTTTTTTCTCCCTAAATCAATTATTAGTACAACCATTTTGTCGCCGTCGGTGTCGATGCTGAACGCCTGAACCACCTGAAGTTTTTGTATGCGCTCTTGCTCAAGGATCGGAGGAGCCCGATGGGGCGATGCGGCGACGGCGACGGTTCAGGGCGGCGTGAGCCGTCCGGGACATCGGCGAGATACGATACAGCTTTTGTATAAGCGTTACGTACGATCACTTTTTATCACCAGAAGGCCTGAAATATTTGTGTTCATACTTCATACTTTAGGGTAAGGCAACGTGTTGTTTTTTTTCCTCCGGAAAGAAATGTACTCCCTCCGTTTCATAATATAAAACTTTCTAGCATTGTCCACATACATATAGA
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| CDS seq | ATGCTTGTCTATGAATACATCAACAATGGGAACTTAGACCAGTGGTTACATGGCGCAAGGAGTCAACATGGTGTTCTTACATGGGAAGCCCGCATGAAAATTATCCTTGACATTGCAAAAGCACTGGCATATTTGCATGAGGGGATAGAGCCAAAAGTTATCCACCGTGATATCAAATCAAGTAATATCCTTATTGATAAAGATTTCACAGGAAAACTTTCTGATTTTGGATTATCTAAGCTCTTACGTGCTGGGAAAAGCCACATTACTACCCGAGTTATGGGAACCTTTGGGTACGTAGCCCCTGAATATGCTAATACTGGGCAGCTAAACGAGAAGAGTGACGTCTACAGTTTTGGAGTGCTACTCTTGGAAGCAGTGACCGGAAGGGATCCAGTTAACTATGGTCGACCTACCGATGAGGTGCACCTGCTGGAGTGGATCAAGCTGATGGCTAGCAGCAGAAGAGCCGAGGAGGTAGTAGACCCTGCGATGGAGGCCAAGCCAACCAAACGGCAGCTGAGGCGCGCGCTCGTGGCTGCCCTCAAGTGCGTCGACCCCAAAGCGGACAAGCGGCCCACGATGGGCAGCGTCGTCCGCATGCTGGAGGCCGATGATGTTGCGCTATCATCACGGCAGGATCGGAGGAGCCCGATGGGGCGATGCGGCGACGGCGACGGTTCAGGGCGGCGTGAGCCGTCCGGGACATCGGCGAGATACGATACAGCTTTTGTATAA
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| Protein seq | MLVYEYINNGNLDQWLHGARSQHGVLTWEARMKIILDIAKALAYLHEGIEPKVIHRDIKSSNILIDKDFTGKLSDFGLSKLLRAGKSHITTRVMGTFGYVAPEYANTGQLNEKSDVYSFGVLLLEAVTGRDPVNYGRPTDEVHLLEWIKLMASSRRAEEVVDPAMEAKPTKRQLRRALVAALKCVDPKADKRPTMGSVVRMLEADDVALSSRQDRRSPMGRCGDGDGSGRREPSGTSARYDTAFV |
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| Function | Probable receptor-like protein kinase At2g42960 [UniProtKB/Swiss-Prot:Q9SJG2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g41730 | LOC_Os01g41730.1 | Chr01 | 23624289 | 23627032 | + | MSU_osa1r7 | ||
| CDS seq | ATGCTTGTCTATGAATACATCAACAATGGGAACTTAGACCAGTGGTTACATGGCGCAAGGAGTCAACATGGTGTTCTTACATGGGAAGCCCGCATGAAAATTATCCTTGACATTGCAAAAGCACTGGCATATTTGCATGAGGGGATAGAGCCAAAAGTTATCCACCGTGATATCAAATCAAGTAATATCCTTATTGATAAAGATTTCACAGGAAAACTTTCTGATTTTGGATTATCTAAGCTCTTACGTGCTGGGAAAAGCCACATTACTACCCGAGTTATGGGAACCTTTGGGTACGTAGCCCCTGAATATGCTAATACTGGGCAGCTAAACGAGAAGAGTGACGTCTACAGTTTTGGAGTGCTACTCTTGGAAGCAGTGACCGGAAGGGATCCAGTTAACTATGGTCGACCTACCGATGAGGTGCACCTGCTGGAGTGGATCAAGCTGATGGCTAGCAGCAGAAGAGCCGAGGAGGTAGTAGACCCTGCGATGGAGGCCAAGCCAACCAAACGGCAGCTGAGGCGCGCGCTCGTGGCTGCCCTCAAGTGCGTCGACCCCAAAGCGGACAAGCGGCCCACGATGGGCAGCGTCGTCCGCATGCTGGAGGCCGATGATGTTGCGCTATCATCACGGCAGGATCGGAGGAGCCCGATGGGGCGATGCGGCGACGGCGACGGTTCAGGGCGGCGTGAGCCGTCCGGGACATCGGCGAGATACGATACAGCTTTTGTATAA
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| Protein seq | MLVYEYINNGNLDQWLHGARSQHGVLTWEARMKIILDIAKALAYLHEGIEPKVIHRDIKSSNILIDKDFTGKLSDFGLSKLLRAGKSHITTRVMGTFGYVAPEYANTGQLNEKSDVYSFGVLLLEAVTGRDPVNYGRPTDEVHLLEWIKLMASSRRAEEVVDPAMEAKPTKRQLRRALVAALKCVDPKADKRPTMGSVVRMLEADDVALSSRQDRRSPMGRCGDGDGSGRREPSGTSARYDTAFV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.289449 | 0.255084 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0601200 | RBH | 0.133851 | 0.283835 | 0.817868 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g41870 | RBH | 0.649499 | 0.619096 | 1.298917 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0601200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0028170 | SBH | 0.0 | 14.864129 | 5.154924 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0023840 | RBH | 0.0 | 0.668785 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0024170 | RBH | 0.094709 | 2.380888 | 1.243347 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0023520 | RBH | 0.0 | 0.322812 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0023280 | RBH | 0.0 | 9.152809 | 0.692798 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0394500 | RBH | 1.6311935 | 2.003163 | 0.1982475 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0023200 | RBH | 0.0 | 0.187162 | 0.031929 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0384000 | RBH | 1.9301365 | 2.298353 | 2.371844 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0023200 | RBH | 0.0 | 0.154690 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0023190 | RBH | 0.0 | 1.145624 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0023440 | RBH | 0.0 | 10.754981 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0023430 | RBH | 0.0 | 0.420192 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0023320 | RBH | 0.0 | 0.456356 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G023550 | RBH | 0.0 | 1.540936 | 0.851716 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0025320 | SBH | 0.000000 | 7.749013 | 5.801127 |
