Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g40930 | OGI:01072020 | 14/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:23153160-23156321 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGCCCCAGGACATTGATGTAGGTCAAAATGTTGAAGTGGATGACCTTCTAGATGCTCTTTTGATGGAAAAAGAGTCCAATCCTGATGCGAAAACTCGCCCAGCCAATTCTATTACTGTTTTTGATGTTGACAAAGCATGTGCAACTGCTAGGAATGCTAGCAACACTATGCTGGAAGTCAGGCTTTTTTTAGCGGCAGTGTTCAGCTTTTCTTCCTTCACAAGTTCTTCTAATTATGTCATTCGCGAATGTTTGGGATCAGTCTTGGACCTAAAGACAGTGGCTACAATTGATTGGTGTAAGCAATTAATGGATCATTTGAAGGCAGGTTTTCAAAACTTCGTTGAATCATATACCATTTGGAGCCCGGTGACCTTTCTTGTAAGCATCTTTGAAATCTTTTCTTTTTTTACAAAAGCAAATGTTGTACGACTAAAAGTAACTAGCAGGTTTTTTGTTTGGACAACCTTGATTGCCATGAAACTGGCAATGCAGCCATGAAGACCCCAAGACTGCAGTACTATACTTCATCAATGGTGGATGATGTTTTTACTCGTCTTGGTGAAGACATCAAGGTATGTAAAAATGTATGCATATGCATGCTAGCACTACCTCACTCCTGATCACCAGGTCCCTCAAACTCACACTCACACTCACGCACACAGCTCACACATGAGAGGTGGAAGAAGATGAGAGAACAGAGAGCACAAACACTTGGTGCTGCTGAACTAATTTGAGCTGCAGCTGCTCTCCTACTTTATAGAAGCAAATGTCAACTATCTAGTACAGGCATACTTGAGTGCTGCTACCAACTACACTACCCACTAACATCTAACTATACATTTCCCTTCCTTGCCCCTTTTTAGGTAAAACCTTGGGCACACACAGTGTATGGAAAAAATGGCATCCCAGATGTTCAACTTGACAAGATTGACTATTCATTCATTCCAGATGTAAGTATAAGTGTTTCCAGCTTCCTTCTTGCATGCAGCAAGCTCCTCGTTAAATTCATCTACTTTATCGTTCAATTCATCTACTTTATGTTGCAAGTCCCCGATCAAATATGTGATATATTGAGGAAAAACCGGATCATGCCATTGAAAGAAACCGCAGTGCACTTGTTCACCCTTACGCTTGTGCCCCTTTTCAGCTTAAGAAGAAGCACAAGCATAAGGCGCCCAATGCAAAGAGGTATAAGATTGGGAAGCTCGGCAAGAAGGAGAAGTGCCCCTTCGAGGAACAAAATGACTCATTTGTGCGTGTTCCTAACATGAGAAATATGCTTGCTTCTCATTTGGATGACCTGGACCTTCCAACTGATATGGCTATCAAAGTCGACCACATTATAGAAAAATATCAGTTGTCGTGGAGAAATGCTGTTGAAGACATAACCTCGAAAGAAATGAGGCATTGTGCCCAAGAATTGGAGGAATTATTTGGACTTGAAGCCCGTAATACTGTAAATAAACTAGATAAATTCTATGCAAGTTTATCTTGTCCAAGATAAACAAAGATGAAAGCAGCAAAAGGGTGGTAGTGGATTTAGGCACATTTAAGTTTACTGAAGATGCATTTGTAGATGTATTCCAACCACATGGTTGGATGAGTAATTGGGTAGTCCAGGCCCTGGTAAATGTTTGGAATGAACAATGGAAAGGTCAAAATGTAATGCTTTCTATAGCTGCCACGGTTAGTACTCCCTCCGTCCCAGAATATAAGGGATTTTGAGATTTTGCTTGCAACGTTTGACCACTCGTCTTATTCAAATTTTTTTGAAATTATTATTTATTTTATTTGTGACTTACTTTATTATCCACAGTACTTTAAGCACAACTTTTCGGTTTTTATATTTGCAAAAAAAAATTGAATAAGACGAGTGATCAAACGTTGCAAACAAAAACTCAAAATCCCTTATATTGTGGGACTGAGGGAGTATCAATTAGAGCAGTTAGCATTTTTCCATCTTGTGTTTAATTTATCCAATATTACAATCTATTCAATTTTATTGTAGGATTTTTTGTTGAGTAAGGGCGACAGCAGAACTCTGCTATACCGGCTTAGGAGAAGAATTGTGCGCCCCAACACAAAACTAGTTTGTGCCCCCTATCCCAAGACAAGTTATTTTTTTCTTCTTTTAGGCCATGAACTAAACATGTTTTTTCCCAGATTTTCATACCCATCCTCCACAGCGAACATTGGTTTTTAGTGGTGTTTGACATGGTGAATAATTGTAAATCTATACTTGATTCATTGCAATCTCATGGGCAGAGAAGTGCTGCAGAAAATGTGGTATGGTTATTTTTCCCCAAATATTTGTCCCTATACTCAGTGATAAACACTTCTTTTTCTTTACCTTGATCCATTCTTGCAAGTATCAAAAGCTGATGGATACTTGAAGTCACTTGGACTTCCTGAATTCGAGTATAAGGAGCTGTCTGTAAAAGCAGCAAAACAACTAGTAATATTTCAGCTGCCTTGAAGAAATTCTTCTCCCGTTCTTTGCTGCATTTATATCTCTATTTGGCTTACATTGTTGAATAATTGTTTCAGTAATGACTGTGGTTTCTTTATGCTGTGGTTCGCAAGTAGAATTGCTGAAGGCAAAAGTATAGACGACTGTGATGATGTTAGTGCTATTTCACACTATAGGTTCCTTTTCTTTTCTTTTTGTTAAACTGCCTGATGTACTTGTGCCTTAAAATGCAGGCTATAATAGCTGAATACCGCAAGTTGCTTGCATCAGAAATCTGGTTTCACAAGGATAACCTCGCCATGGTTGATCTTACTAAGACTGATAGTGAGAAATCTGATGAAGAACGCGATACAGGCACAAGAACCTATATTGAGACTGATGGACGTGCCAATGGTGAAGAATCAGCTGGAGACAGTGATCGAAAAGGCGATGCTAGCATAAAGGAAGAATCAGATGCAACAGCCTCTGATAGAGATGCAAGAAAGAGGAAACATTCTGAGACTGAATCTGAAATAGATGGAAGAGCCAATGCTCGTGCTCCCAGAACGGCCTCTGCTTCAAGAGATTCTATCCCTAAGAAGACTAGAATCGTAGAAAGCATCAACAAAAATGTTGAGGTACATCTTGCTTACCCATTGGAAGGCATTGGCTCAACTGTCATTTTACTGATAGACCAATCCGTGAATTGA
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| CDS seq | ATGCCCCAGGACATTGATGTAGGTCAAAATGTTGAAGTGGATGACCTTCTAGATGCTCTTTTGATGGAAAAAGAGTCCAATCCTGATGCGAAAACTCGCCCAGCCAATTCTATTACTGTTTTTGATGTTGACAAAGCATGTGCAACTGCTAGGAATGCTAGCAACACTATGCTGGAAGTCAGGCTTTTTTTAGCGGCAGTGTTCAGCTTTTCTTCCTTCACAAGTTCTTCTAATTATGTCATTCGCGAATGTTTGGGATCAGTCTTGGACCTAAAGACAGTGGCTACAATTGATTGGTCCATGAAGACCCCAAGACTGCAGTACTATACTTCATCAATGGTGGATGATGTTTTTACTCGTCTTGGTGAAGACATCAAGGTAAAACCTTGGGCACACACAGTGTATGGAAAAAATGGCATCCCAGATGTTCAACTTGACAAGATTGACTATTCATTCATTCCAGATCTTAAGAAGAAGCACAAGCATAAGGCGCCCAATGCAAAGAGGTATAAGATTGGGAAGCTCGGCAAGAAGGAGAAGTGCCCCTTCGAGGAACAAAATGACTCATTTGTGCGTGTTCCTAACATGAGAAATATGCTTGCTTCTCATTTGGATGACCTGGACCTTCCAACTGATATGGCTATCAAAGTCGACCACATTATAGAAAAATATCAGTTGTCGTGGAGAAATGCTGTTGAAGACATAACCTCGAAAGAAATGAGGCATTGTGCCCAAGAATTGGAGGAATTATTTGGACTTGAAGCCCGTAATACTATAAACAAAGATGAAAGCAGCAAAAGGGTGGTAGTGGATTTAGGCACATTTAAGTTTACTGAAGATGCATTTGTAGATGTATTCCAACCACATGGTTGGATGAGTAATTGGGTAGTCCAGGCCCTGGCTATAATAGCTGAATACCGCAAGTTGCTTGCATCAGAAATCTGGTTTCACAAGGATAACCTCGCCATGGTTGATCTTACTAAGACTGATAGTGAGAAATCTGATGAAGAACGCGATACAGGCACAAGAACCTATATTGAGACTGATGGACGTGCCAATGGTGAAGAATCAGCTGGAGACAGTGATCGAAAAGGCGATGCTAGCATAAAGGAAGAATCAGATGCAACAGCCTCTGATAGAGATGCAAGAAAGAGGAAACATTCTGAGACTGAATCTGAAATAGATGGAAGAGCCAATGCTCGTGCTCCCAGAACGGCCTCTGCTTCAAGAGATTCTATCCCTAAGAAGACTAGAATCGTAGAAAGCATCAACAAAAATGTTGAGGTACATCTTGCTTACCCATTGGAAGGCATTGGCTCAACTGTCATTTTACTGATAGACCAATCCGTGAATTGA
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| Protein seq | MPQDIDVGQNVEVDDLLDALLMEKESNPDAKTRPANSITVFDVDKACATARNASNTMLEVRLFLAAVFSFSSFTSSSNYVIRECLGSVLDLKTVATIDWSMKTPRLQYYTSSMVDDVFTRLGEDIKVKPWAHTVYGKNGIPDVQLDKIDYSFIPDLKKKHKHKAPNAKRYKIGKLGKKEKCPFEEQNDSFVRVPNMRNMLASHLDDLDLPTDMAIKVDHIIEKYQLSWRNAVEDITSKEMRHCAQELEELFGLEARNTINKDESSKRVVVDLGTFKFTEDAFVDVFQPHGWMSNWVVQALAIIAEYRKLLASEIWFHKDNLAMVDLTKTDSEKSDEERDTGTRTYIETDGRANGEESAGDSDRKGDASIKEESDATASDRDARKRKHSETESEIDGRANARAPRTASASRDSIPKKTRIVESINKNVEVHLAYPLEGIGSTVILLIDQSVN |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g40930 | LOC_Os01g40930.1 | Chr01 | 23153160 | 23156321 | + | MSU_osa1r7 | ||
| CDS seq | ATGCCCCAGGACATTGATGTAGGTCAAAATGTTGAAGTGGATGACCTTCTAGATGCTCTTTTGATGGAAAAAGAGTCCAATCCTGATGCGAAAACTCGCCCAGCCAATTCTATTACTGTTTTTGATGTTGACAAAGCATGTGCAACTGCTAGGAATGCTAGCAACACTATGCTGGAAGTCAGGCTTTTTTTAGCGGCAGTGTTCAGCTTTTCTTCCTTCACAAGTTCTTCTAATTATGTCATTCGCGAATGTTTGGGATCAGTCTTGGACCTAAAGACAGTGGCTACAATTGATTGGTCCATGAAGACCCCAAGACTGCAGTACTATACTTCATCAATGGTGGATGATGTTTTTACTCGTCTTGGTGAAGACATCAAGGTAAAACCTTGGGCACACACAGTGTATGGAAAAAATGGCATCCCAGATGTTCAACTTGACAAGATTGACTATTCATTCATTCCAGATCTTAAGAAGAAGCACAAGCATAAGGCGCCCAATGCAAAGAGGTATAAGATTGGGAAGCTCGGCAAGAAGGAGAAGTGCCCCTTCGAGGAACAAAATGACTCATTTGTGCGTGTTCCTAACATGAGAAATATGCTTGCTTCTCATTTGGATGACCTGGACCTTCCAACTGATATGGCTATCAAAGTCGACCACATTATAGAAAAATATCAGTTGTCGTGGAGAAATGCTGTTGAAGACATAACCTCGAAAGAAATGAGGCATTGTGCCCAAGAATTGGAGGAATTATTTGGACTTGAAGCCCGTAATACTATAAACAAAGATGAAAGCAGCAAAAGGGTGGTAGTGGATTTAGGCACATTTAAGTTTACTGAAGATGCATTTGTAGATGTATTCCAACCACATGGTTGGATGAGTAATTGGGTAGTCCAGGCCCTGGCTATAATAGCTGAATACCGCAAGTTGCTTGCATCAGAAATCTGGTTTCACAAGGATAACCTCGCCATGGTTGATCTTACTAAGACTGATAGTGAGAAATCTGATGAAGAACGCGATACAGGCACAAGAACCTATATTGAGACTGATGGACGTGCCAATGGTGAAGAATCAGCTGGAGACAGTGATCGAAAAGGCGATGCTAGCATAAAGGAAGAATCAGATGCAACAGCCTCTGATAGAGATGCAAGAAAGAGGAAACATTCTGAGACTGAATCTGAAATAGATGGAAGAGCCAATGCTCGTGCTCCCAGAACGGCCTCTGCTTCAAGAGATTCTATCCCTAAGAAGACTAGAATCGTAGAAAGCATCAACAAAAATGTTGAGGTACATCTTGCTTACCCATTGGAAGGCATTGGCTCAACTGTCATTTTACTGATAGACCAATCCGTGAATTGA
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| Protein seq | MPQDIDVGQNVEVDDLLDALLMEKESNPDAKTRPANSITVFDVDKACATARNASNTMLEVRLFLAAVFSFSSFTSSSNYVIRECLGSVLDLKTVATIDWSMKTPRLQYYTSSMVDDVFTRLGEDIKVKPWAHTVYGKNGIPDVQLDKIDYSFIPDLKKKHKHKAPNAKRYKIGKLGKKEKCPFEEQNDSFVRVPNMRNMLASHLDDLDLPTDMAIKVDHIIEKYQLSWRNAVEDITSKEMRHCAQELEELFGLEARNTINKDESSKRVVVDLGTFKFTEDAFVDVFQPHGWMSNWVVQALAIIAEYRKLLASEIWFHKDNLAMVDLTKTDSEKSDEERDTGTRTYIETDGRANGEESAGDSDRKGDASIKEESDATASDRDARKRKHSETESEIDGRANARAPRTASASRDSIPKKTRIVESINKNVEVHLAYPLEGIGSTVILLIDQSVN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0023670 | RBH | 0.0 | 0.0 | 0.414515 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0023260 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0023580 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0022990 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0022670 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0387000 | RBH | 0.0060665 | 0 | 0.071341 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0022610 | RBH | 0.000000 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0375600 | RBH | 0 | 0 | 1.188003 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0022830 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0022840 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0022680 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G022980 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0022650 | RBH | 0.0 | 0.0 | 0.0 |
