Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g40590 | OGI:01071190 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:22918453-22923870 | ||||||||
| Gene Symbol | RLCK40, OsRLCK40, PTK1, OsPTK1 | ||||||||||
| DNA seq | ACTCACTTACAACGACGCAGTACAACAAGAAGCAGTAACAATCAATCCATCACAGACAAGAGAGTGAGTAGAGAGTTACCAGCCGGTAAAAAGGATGGGTAAAATGATCAGGGGAGTAATGGCACGTGCGAGCATCTTAGATTACCAAACTCGCATCGTCGCATGCATGCATATGATCATGATCTATCTGTCAAAGGAAGGAGGGGTGCGTCGCGTACCACGGCCTACCTGAAAGCGGAGCTTAGCTCTGTCACCCCATCAATGGCACATGCGCCTTAACTGACCTGCCTGCCCTTCCTCCCTTCCTCACCATCTCCATAATCCAGCAAGCATCATGGAATGATGATGGCGACGACGAAGACGACGGTCTTTGATGACGACCAATTTGCCTCCCCTTTTTTTTTGCCATTCTCCACATGGCGATTAATTACAAGGCGAAGGCGACCGACAGGTGATGACAGTGCGAGTAAGAGCCCAAACCCAGCATTCTCCGGGAAGGGGCAAACCTAACCACCTCAGTCTGAGCATTTGTTCAGAAGAAAAGCAAAAGAAAAACCCGGTTTGATCCACCCCCTCTCCCAAGTCAAGGGTAAGCTAGAATTGGAAATGTAGAAGCTTAAGCGACAAGATGAAAGTTTGCACATTGTACACGTTTGCGCGCAGTTCTAGTCGTTCTGGAAACCCGGTTTCCTCCACGACACAGGGTGCTCCCAGGTGCCATGGTAGGTTGGTTGGGTGCACCACCAATGCACCCAGGTTGGATAGGAAGTCCAGTCTTGCACTGATCATTGTTGAATGGATGGCAGAATGAGCACCAAGGACTCTCTCATTGCAGTTTGCCGTTGTTGGGCCTTGGGGACTGCCGGTACGGGGAGGCGTGCGGGCCATAGGAGAGGCTCCTCATTGGCTGCTGCCCGTTGCGCGCGAAGGTGCCCTGTGCCTTCATGCTTTGGCTGCCAATTGGGTTGCCGAGGCTTGCGGCACGCTCCTGCTGCATGGATTGGAAGAAGTATGAGGAGCTGGCCATGTCTTTGAGGTTCAGGAGGGGCTTGAGGACTTCGACCACTTGACTCATGAGAGGCCTGGCCTTGGGATCCCGGTTAAGGCAGGCACAGGCCAGCTGAGCTGTCTTCTGAGCGCCTCTTATGGAGAAGTTCCCCTCCAGACGGGGGTCTACAAGCCTATAGAATCGCCGTCTTTCTCCAAGATAAGGACGCGCCCATTCAACCAGGTTGTGTTCACCGTTTGGCCTATTCTTGTCCATTGACCTTCTGCCTGACATCATCTCCAGTAGCACCACTCCAAAGCTGTACACGTCACTCTTTGATGTCAAGTGACCTGAGAAAGAAATGAACTGATGAAGTGGTGGAACACTGCAATATACCAAGTGAATGTGGTGCAGTTTAATTCTCAAACAAGTGAATAAATAGCAAATTATGTACAGTACTGTGATATATGAGTACATTCATTCAGCTTAGATCAGTCAATGGAAGTTCAAAGCTCATCAAATCAAAATGGGCAACATAATTTTGAGCCAGTGCAATTATGATTCTTTTGGACTGCCTCAGAGAGAGAGATTCAGATAAACAGCTATTGCACCACCACAGCAGCACATGGAGTGCCTTAAATATCAGTAATCACAGAAAATTAAGATGGTGTGCCATGATAGCACCCAGATCATTGTGAATGTGACCAAAAAAGGTGCAGGCTATAATAAAACACTCCATGCACACATCCTTGTACACAGATTTCATCTATGTCAAGTCACTGAAAGTTTCTACTGAAGGGCTATCTAGGAAATTTGTCAAAGGAAATATAATGTGCCATGAAAGATTTTACTACATGTGCAAGTTTGGATAGAGGTTCAGCAGCATGATGCAATATTTCAAAATTACTCAAGCAAGCCAACTAACAAAGTAATGATCAACTCACCTGTCATGACATACTCCGGAGCTGCATATCCATAAGTTCCCATGACTCGAGTAGATACATGTGTTTTATCACCCTCAGGGCCATCTTTAGCTAGTCCAAAATCAGAGAGTTTTGCATTGTAGTCCTGAAAATGAATATTTAAGAAATATGAGAATGTTACAATCTAAATGAACATTTCTAATATGTTTTGATTCTCAAACATGGTTGCATACCGCGTCTAAAAGAATATTTGAAGTTTTGAAATCCCGATAGATAACTGGCCTTTCAGCTTCTTCATGAAGAAAAGCAAGGCCCTTAGCAGCACCAAGTGCTATTCTCATTCTGATGGCCCATGGGAGAGGTAAAGACCCTGTTTAATACAATTATCCAAGACAAATATCAGATAAATACAAGACACTTCAGAATAGAGTTATACTGAAATGAAACAGTTGGGCCAAATTTAACGCAACACAGCAATAACAGTGCATAAACTACATTGTCTAAAGGAGGAGAACAAAGAGTTGCACCCAAGGTATTTAGTCGGTAATAATAAAACACCAAAAATACATCATTTGGAATTGGAAACATGTAACATAGCACCACCTAACACCCTTATTGACTGCCAGAAATCGTAATGAACAGTTAGTAAGGTGTCAGCCATTTCTTAATGAACTCTTAAATGCCAAACTGTCAGACATTCAAGTATACAGTACAACAGAATTGCTACAAAATATGAATAAAATAAATAATCAACTACATCACTAGAGCAGAGTACAATATAGAAAAGTGCATATAAAAATGCAGGTACTACAAGAAAAACTGCTACCGTGAACAATGAAAGAACTCCAAACTGTTGGCAACAAATGGGAAGAAAAAAATGACTGACAGTAGGACGCAAAGATTCTTACTCCTAAAAAGATGGTTCTCCAAGCTTCCACGAGGCATAAATTCATACACTAGCAACCTTTGGTCATCTTCGATGCAGTAACCAACCAATTTCACTAGGTGTGGATGTTGAAGGTTTCCAAGAAAATCAACTTCTGCCTGAAAATGAAATAACGCTAGTTTAATTGATGATGCATTAGAAGACAGTTGAATAATATTTTGTGGTCTGTATGCTGAAGCAATTCAAAACATACCACCCACTCTTTATGGCCCTGCAGCCCATCATGGTTAAGTGTCTTGACAGCAACCGTTAATCCTGTGCCAGGTTTTACGGGAGCAGTTCCGTTCTCCTCAATCCAACCTTTAAAGACACAGCCAAAACCTCCTTCACCAAGGAGACTCTCAGGCCGGAAGTTTCTTGTGGCACACTTAAGTTCATTAAATGTAAACCTACGGAGTTGGAAAGCTAGTTTAAGTTCCTCTCCGACTATGGACGAAGGTGAGATGCTTCCAGTGTTACTGGATGTTGTGGAACCAGAGGCCATTGGTTGAACTGAATGGTCTCGACAACCATCATTCGCTGATTTGCTTTCTGCACATGAAACATAATCCTTGTTAGGGGAATAACTAAAAAGCTTATATCATTAACATAATATCCTAAAATAACTCAACAGGAAAAGGACTTGGTTCTTAGCAGAAGATGACAACCTGAGACGGTTGCAGCAGAAATATTTAGCAAGTTCTAGAGGGTTTGTTGGGATGTATTTTATGCTATGTCCCACACTGTATGATTTGTTCAGAGTTTTTTTTTCCCTTTCTACGTTTCAAACGGTTGGGTCGAAGATTATCTATATGAAGATTAAAGATTAAAAAGAAAGAAAAGGCTTCTTTCCCAACAAAAGCAGGTAAGTCAGCATTACATCAAGAATAGACCAGTTTTTTTTCTTCCAAATTTTGGTTCCCAAACAATGTAATGTAAGAAAAGGCACTACCAGAACAAATTAATACATTCGTGGACAGAGGAGTAGAAAATGACCACTCCTTTTACTCCAACAGAGCTGGACATGAATGCCATATTCAGCCAAAGCTCCAACTATCCATGTGGCCTGCTAGAGTGTTAAGTGCAAACTGGAGCGACCAAGTATATTAAGTCAAGTTAGCATTTCCCTATTGAGCGTTTCACTTCACTCATACACACACGTTTGTCGGTATTCAGCGCATGCATTATCTAATTATAGCCAAATATGCAAACCTCCATGCAACCCACACACCAATAAAATATAAGCATCTACAAACACAAACTGAAAAGAATTGAAAGTACTGAATCTAATCTGCTCGCCTCCCGCCAACCACAGGTGTTCTACTCATCTCACAGCAACCAAACCGTCACTACATATCTTCCCCATACTACAACGGCTTCATCCAGAGGACATCCACTACAGAATCCCCTGGCACTAGCAAGCCACAAAGCCCTACAACCAGGAGCACAAAGCACGAGCAACTCGAACACCAATGGCAGCACTCCAAAGCCACAGACCCTGCAGACTCGTACACAACAGCACAGCAGGACAGCACACAGCTCCCATCATCAATCTCATTAATCTAATACCCGTACGTGAATGAAGCGGAGGCCATCCCGTCCCGTCCCATTCCCATCCTATGCCAGTATGCCACACACACCCCACACACACACACCAACCACTCTATCCAACTCACGCTCTTGAATTCGTACCACCCACCAAAGCCCTCTCCTCTCCTCTCTCGGATCACACCAACACACATCCATTTTTTTCATCATAGAATGCTCCCATCACAATCAAACATTACTTCTAAAAGTAAAAAAGGATAAAAACAGAAAATACTACTAGAAAACAAAGCTTCCGCCAGCAGCCATGGCGCCATCTCATCTCATGCGGCGCTAGCGTACAATTCTCTCGCGCCCGTGCACGCGTGGCGCCGCCACCCCGAGCGACCGACGCAAAAGCATGCGCCGAAAACGAAGAGCGGAACACGAGGGAAGCAAGCAAGTAGTACAAGCGAGTGCGGGAGAGGATGGAAGAGATTACCGCCGCCGACGCGAGCGCTGCCGCCGCCGCCGCCGCCGCTGGTGGTGGTGGAGGAGTCGACCTTGGAGCGCGACGACATGCAGCCGCCGCCGAGCCGGCGCGGGATGCGGATCCAGCACCCCATCGCGGGCGCCGCGTCCTCCTCCTCCTGCTGCAGCACCATCTCCCCCGCCCCCTTCCCCTTCCCCTTCCTCCTCCGCCTCCCCTCCTCCTCCCGCCGCTTCCCCTCCTTCCCCATCACCCCCACCCGCGCGCACACACGCACCTTCACCGCCGCCGCCCACCCGCGCAACCCCCGAGGTCCCCCGCTCGTCAGCGCCGCGGAGGAAGCCGCCGCCGCGCGCTCCCCCCGGCGGCGAGCGCGCAGGGTGGCATCGGCGACGCCGCGCGGCGGGTGGTGGTGGAAGGGAAGTCGAGGAGGAGAGTGAAGAGGAGGGGTGGTGGTGGTGTCGGGGCAGCGCGGGCAGGGGAAAGGCGAAGGCTGAGGGCGAGGATGCGGGCAGAGCGGGCAGGGCGGCCAGAAAGCCAAGCGGAGTGGGAATTTGGCAAAGACCGA
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| CDS seq | ATGGGGAAGGAGGGGAAGCGGCGGGAGGAGGAGGGGAGGCGGAGGAGGAAGGGGAAGGGGAAGGGGGCGGGGGAGATGGTGCTGCAGCAGGAGGAGGAGGACGCGGCGCCCGCGATGGGGTGCTGGATCCGCATCCCGCGCCGGCTCGGCGGCGGCTGCATGTCGTCGCGCTCCAAGGTCGACTCCTCCACCACCACCAGCGGCGGCGGCGGCGGCGGCAGCGCTCGCGTCGGCGGCGAAAGCAAATCAGCGAATGATGGTTGTCGAGACCATTCAGTTCAACCAATGGCCTCTGGTTCCACAACATCCAGTAACACTGGAAGCATCTCACCTTCGTCCATAGTCGGAGAGGAACTTAAACTAGCTTTCCAACTCCGTAGGTTTACATTTAATGAACTTAAGTGTGCCACAAGAAACTTCCGGCCTGAGAGTCTCCTTGGTGAAGGAGGTTTTGGCTGTGTCTTTAAAGGTTGGATTGAGGAGAACGGAACTGCTCCCGTAAAACCTGGCACAGGATTAACGGTTGCTGTCAAGACACTTAACCATGATGGGCTGCAGGGCCATAAAGAGTGGGTGGCAGAAGTTGATTTTCTTGGAAACCTTCAACATCCACACCTAGTGAAATTGGTTGGTTACTGCATCGAAGATGACCAAAGGTTGCTAGTGTATGAATTTATGCCTCGTGGAAGCTTGGAGAACCATCTTTTTAGGAGGTCTTTACCTCTCCCATGGGCCATCAGAATGAGAATAGCACTTGGTGCTGCTAAGGGCCTTGCTTTTCTTCATGAAGAAGCTGAAAGGCCAGTTATCTATCGGGATTTCAAAACTTCAAATATTCTTTTAGACGCGGACTACAATGCAAAACTCTCTGATTTTGGACTAGCTAAAGATGGCCCTGAGGGTGATAAAACACATGTATCTACTCGAGTCATGGGAACTTATGGATATGCAGCTCCGGAGTATGTCATGACAGGTCACTTGACATCAAAGAGTGACGTGTACAGCTTTGGAGTGGTGCTACTGGAGATGATGTCAGGCAGAAGGTCAATGGACAAGAATAGGCCAAACGGTGAACACAACCTGGTTGAATGGGCGCGTCCTTATCTTGGAGAAAGACGGCGATTCTATAGGCTTGTAGACCCCCGTCTGGAGGGGAACTTCTCCATAAGAGGCGCTCAGAAGACAGCTCAGCTGGCCTGTGCCTGCCTTAACCGGGATCCCAAGGCCAGGCCTCTCATGAGTCAAGTGGTCGAAGTCCTCAAGCCCCTCCTGAACCTCAAAGACATGGCCAGCTCCTCATACTTCTTCCAATCCATGCAGCAGGAGCGTGCCGCAAGCCTCGGCAACCCAATTGGCAGCCAAAGCATGAAGGCACAGGGCACCTTCGCGCGCAACGGGCAGCAGCCAATGAGGAGCCTCTCCTATGGCCCGCACGCCTCCCCGTACCGGCAGTCCCCAAGGCCCAACAACGGCAAACTGCAATGA
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| Protein seq | MGKEGKRREEEGRRRRKGKGKGAGEMVLQQEEEDAAPAMGCWIRIPRRLGGGCMSSRSKVDSSTTTSGGGGGGSARVGGESKSANDGCRDHSVQPMASGSTTSSNTGSISPSSIVGEELKLAFQLRRFTFNELKCATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWVAEVDFLGNLQHPHLVKLVGYCIEDDQRLLVYEFMPRGSLENHLFRRSLPLPWAIRMRIALGAAKGLAFLHEEAERPVIYRDFKTSNILLDADYNAKLSDFGLAKDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMMSGRRSMDKNRPNGEHNLVEWARPYLGERRRFYRLVDPRLEGNFSIRGAQKTAQLACACLNRDPKARPLMSQVVEVLKPLLNLKDMASSSYFFQSMQQERAASLGNPIGSQSMKAQGTFARNGQQPMRSLSYGPHASPYRQSPRPNNGKLQ |
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| Function | Probable serine/threonine-protein kinase PIX7 [UniProtKB/Swiss-Prot:Q9LFP7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g40590 | LOC_Os01g40590.1 | Chr01 | 22918453 | 22923870 | - | MSU_osa1r7 | ||
| CDS seq | ATGGGGAAGGAGGGGAAGCGGCGGGAGGAGGAGGGGAGGCGGAGGAGGAAGGGGAAGGGGAAGGGGGCGGGGGAGATGGTGCTGCAGCAGGAGGAGGAGGACGCGGCGCCCGCGATGGGGTGCTGGATCCGCATCCCGCGCCGGCTCGGCGGCGGCTGCATGTCGTCGCGCTCCAAGGTCGACTCCTCCACCACCACCAGCGGCGGCGGCGGCGGCGGCAGCGCTCGCGTCGGCGGCGAAAGCAAATCAGCGAATGATGGTTGTCGAGACCATTCAGTTCAACCAATGGCCTCTGGTTCCACAACATCCAGTAACACTGGAAGCATCTCACCTTCGTCCATAGTCGGAGAGGAACTTAAACTAGCTTTCCAACTCCGTAGGTTTACATTTAATGAACTTAAGTGTGCCACAAGAAACTTCCGGCCTGAGAGTCTCCTTGGTGAAGGAGGTTTTGGCTGTGTCTTTAAAGGTTGGATTGAGGAGAACGGAACTGCTCCCGTAAAACCTGGCACAGGATTAACGGTTGCTGTCAAGACACTTAACCATGATGGGCTGCAGGGCCATAAAGAGTGGGTGGCAGAAGTTGATTTTCTTGGAAACCTTCAACATCCACACCTAGTGAAATTGGTTGGTTACTGCATCGAAGATGACCAAAGGTTGCTAGTGTATGAATTTATGCCTCGTGGAAGCTTGGAGAACCATCTTTTTAGGAGGTCTTTACCTCTCCCATGGGCCATCAGAATGAGAATAGCACTTGGTGCTGCTAAGGGCCTTGCTTTTCTTCATGAAGAAGCTGAAAGGCCAGTTATCTATCGGGATTTCAAAACTTCAAATATTCTTTTAGACGCGGACTACAATGCAAAACTCTCTGATTTTGGACTAGCTAAAGATGGCCCTGAGGGTGATAAAACACATGTATCTACTCGAGTCATGGGAACTTATGGATATGCAGCTCCGGAGTATGTCATGACAGGTCACTTGACATCAAAGAGTGACGTGTACAGCTTTGGAGTGGTGCTACTGGAGATGATGTCAGGCAGAAGGTCAATGGACAAGAATAGGCCAAACGGTGAACACAACCTGGTTGAATGGGCGCGTCCTTATCTTGGAGAAAGACGGCGATTCTATAGGCTTGTAGACCCCCGTCTGGAGGGGAACTTCTCCATAAGAGGCGCTCAGAAGACAGCTCAGCTGGCCTGTGCCTGCCTTAACCGGGATCCCAAGGCCAGGCCTCTCATGAGTCAAGTGGTCGAAGTCCTCAAGCCCCTCCTGAACCTCAAAGACATGGCCAGCTCCTCATACTTCTTCCAATCCATGCAGCAGGAGCGTGCCGCAAGCCTCGGCAACCCAATTGGCAGCCAAAGCATGAAGGCACAGGGCACCTTCGCGCGCAACGGGCAGCAGCCAATGAGGAGCCTCTCCTATGGCCCGCACGCCTCCCCGTACCGGCAGTCCCCAAGGCCCAACAACGGCAAACTGCAATGA
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| Protein seq | MGKEGKRREEEGRRRRKGKGKGAGEMVLQQEEEDAAPAMGCWIRIPRRLGGGCMSSRSKVDSSTTTSGGGGGGSARVGGESKSANDGCRDHSVQPMASGSTTSSNTGSISPSSIVGEELKLAFQLRRFTFNELKCATRNFRPESLLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWVAEVDFLGNLQHPHLVKLVGYCIEDDQRLLVYEFMPRGSLENHLFRRSLPLPWAIRMRIALGAAKGLAFLHEEAERPVIYRDFKTSNILLDADYNAKLSDFGLAKDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMMSGRRSMDKNRPNGEHNLVEWARPYLGERRRFYRLVDPRLEGNFSIRGAQKTAQLACACLNRDPKARPLMSQVVEVLKPLLNLKDMASSSYFFQSMQQERAASLGNPIGSQSMKAQGTFARNGQQPMRSLSYGPHASPYRQSPRPNNGKLQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.879274 | 0.288032 | 1.255810 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0588500 | RBH | 1.368403 | 0.450705 | 5.134292 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g19700 | RBH | 1.398789 | 1.509069 | 1.503698 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0588500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0023420 | RBH | 0.148071 | 5.272094 | 7.045610 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0022990 | RBH | 0.166550 | 2.079462 | 2.990071 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0023320 | RBH | 1.638596 | 11.295214 | 11.507607 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0022730 | RBH | 0.189084 | 0.291669 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0022410 | RBH | 1.581062 | 10.450361 | 17.498970 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0382500 | RBH | 7.599952 | 46.0356255 | 82.785057 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0022360 | RBH | 0.362629 | 0.777640 | 2.053447 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0371700 | RBH | 9.6173325 | 56.601925 | 59.134802 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0022350 | RBH | 0.035786 | 0.339987 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0022290 | RBH | 0.195695 | 17.793495 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0022580 | RBH | 2.005733 | 8.177117 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0022610 | RBH | 0.079168 | 0.986079 | 2.361130 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0022410 | RBH | 0.228081 | 7.470804 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G022740 | RBH | 0.135626 | 2.295748 | 5.486106 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0022410 | RBH | 1.019521 | 15.114476 | 5.330659 |
