Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g27640 | OGI:01041690 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:15413115-15415791 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGGGTGTTTTGAGTTGACAAAGGATTTGTGCGATCAGATTAGCAAGATGATAGCGAAGTACTGGTGGAGCAACCAGGAGAAGGACAATAAGATGCATTGGTTAAGTTGGAATAAATTGACATTGCCAAAAAATATGGGGGGCTTAGGTTTCAGGGACATTTACATCTTCAACCTAGCGATGCTAGCCAAGCAAGGATGGAGATTGATTCAGGACCCTGACTCTCTGTGCTCAAGGGTTCTTAGAGCTAAATACTTCCCTCTGGGGGACTGTTTCCGGCCAAAGCAGACATCAAATGTTTCCTATACTTGGAGAAGCATACAGAAGGGTCTCAGAGTGTTGCAAAATGGGATGATATGGAGGATGGGAGATGGATCGAAGATTAACATCTGGGCGGATCCCTGGATCCCGAGGGGATGGTCAAGGAAACCTATGACACCCAGAGGCGCTAACCTTGTGACAAAAGTGGAGGAACTGATTGACCCTTATACTGGAACTTGGGATGAAGATTTGCTGTCACAAACTTTTTGGGAAGAGGACGTCGCAGCTATTAAATCCATTCCTGTGCATGTTGAAATGGAGGATGTTTTGGCGTGGCACTTTGATGCGAGAGGATGCTTCACGGTCAAATCAGCTTACAAGGTGCAAAGGGAGATGGAGAGAAGAGCTAGCAGAAACGGATGCCCTGGGGTCTCAAATTGGGAGAGTGGGGATGATGATTTTTGGAAGAAGCTCTGGAAACTGGGTGTTCCAGGAAAGATCAAACACTTCTTGTGGAGAATGTGCCACAACACGCTGGCGTTGCGTGCTAACCTGCAGCATCGAGGTATGGATGTCGATACTAGATGTGTGATGTGTGGCCGGTATAATGAAGATGCTGGACATCTTTTCTTTAAGTGCAAGCCAGTGAAGAAAGTTTGGCAAGCTTTAAACCTAGAAGAGTTGAGATCCATGCTAGAGCAGCAAACGTCAGGAAAGAATGTGTTACAATCAATTTACTGTCGCCCGGAAATTGAACGAACAAGTGCCATAGTTTGCCTTTGGCAGTGGTGGAAAGAGAGGAATGAAGTAAGAGAAGGAGGAATACCAAGGAGCCCAGCTGAGCTCTCACACCTGATTATGTCACAGGCAGGAGAGTTTGTTAGGATGAATGTAAAGGAAAAAAGCCCCAGAACAGGAGAGTGTGCAGTTTGGAGACGGCCACCCCTGAACTTTGTGAAAATCAACACCGACGGAGCATACAGTAGTAACATGAAGCAGGGAGGATGGGGTTTTGTGATCAGGGATCAGACTGGCGCAGTCCTTCAGGCAGGAGCTGGTCCGGCAGCTTATCTACAAGACGCCTTCCATGCTGAAGTTGTTGCCTGTGCTGCTGCAATCAAGACTGCGAGTGAAAGGGGTATGTCCAGAATTGAGCTAGAAACAGACTCAATGATGCTTCGGTATGCGATTCAGGATAATTCCTTTAACCTTTCATCCTTAGGAGGAGTGATTCTTGAGATTAAACATATAATTTTGAGCTGTTTTCATTCCTTCTCTGTTAGCTACTCGCCCCGGAGTTGTAATAAGGTGGCACATGAGCTTGCCGCGTATGGTTGTAATCTCCAGACCGTGTCTTCCTGGGCAGGCTGCCCGCCTGGTCTGGAACGGCTGGTATCCAGCGATTCTGCTGGTTTGGTAATATAAATCTCTCGGTTTCCCTCAAAAAAAAACGCCTGCATATTTCATTCCTCACTTTTCAGAGAAGCCACAACCACAAACCAGCAGCGTGAATAATGTTTATTACGGAGTAATCACTATTTCCATCAGCTGACAACTTTCGATACTGAATTACTGATACTCGTTCAGTCTCCTGCATACACATTACAGATAAGTACTGTAGTATTTTTGCATCTATGTCATTTCTCAATTACTCCTAGTGCCCTCCATTGCTGAGCGGTGGAACCTTTTTTTTTTTTTTAGAGAACTCTGAGCGGCCAATCTATCCATCGTTGTCCTCTGCGCCAGATTTGGGTGCCACTCGACTTTTGGGTGGTGGATCTATCACGAACAGTAGTAACCTTCTGATTTGCCTTCCTTGAACCTCTGCCAGCTTCAACTTAATTATTTGTTTCTTTCCAAACCAGCCTCCCTATAGATCAGTAGCTGCAATAAAATTGTAAACATTAGCCATGTGAAAAGTATATCAGAAAATTTATCTTCATATGTAGCTTCATAATATTGTATAAATTTACAATATCCACCAACATAAAATTGTAGAAATTAATCAAAATTACTGGTACCAGGATGGCATGTATGTGTAAACAGTGTAATTTTCATTTCTATTATTTATACAAGCTCTAGTTGAATAATACAGGTTACCTCATAGCAGGTAGCACCGTGGTAGAGCAGATTCTTGACTGGAATTCATTCAACATGGCAAGGGAATACGCGATGCAGTGAGATCCAAACAACGAACAGTCTGAGGTTCACTTCAATCTGATTCTTGTCTGTGTTTTCCCACTGTTGTAGTTCATTGTTAGGAAAACCACATCGGAGGCCTATCAGCTGGTGCAGAACTCAAGTACATGATACTGATTTGAACAAAGTTTTGAAGTTTGAATTGGACCAGTTGAAACCTTTAACTCCAAATGGCTATAAGATTGAACCATTCAACGAGTTACCTTACTTTGGTTGA
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| CDS seq | ATGGGGTGTTTTGAGTTGACAAAGGATTTGTGCGATCAGATTAGCAAGATGATAGCGAAGTACTGGTGGAGCAACCAGGAGAAGGACAATAAGATGCATTGGTTAAGTTGGAATAAATTGACATTGCCAAAAAATATGGGGGGCTTAGGTTTCAGGGACATTTACATCTTCAACCTAGCGATGCTAGCCAAGCAAGGATGGAGATTGATTCAGGACCCTGACTCTCTGTGCTCAAGGGTTCTTAGAGCTAAATACTTCCCTCTGGGGGACTGTTTCCGGCCAAAGCAGACATCAAATGTTTCCTATACTTGGAGAAGCATACAGAAGGGTCTCAGAGTGTTGCAAAATGGGATGATATGGAGGATGGGAGATGGATCGAAGATTAACATCTGGGCGGATCCCTGGATCCCGAGGGGATGGTCAAGGAAACCTATGACACCCAGAGGCGCTAACCTTGTGACAAAAGTGGAGGAACTGATTGACCCTTATACTGGAACTTGGGATGAAGATTTGCTGTCACAAACTTTTTGGGAAGAGGACGTCGCAGCTATTAAATCCATTCCTGTGCATGTTGAAATGGAGGATGTTTTGGCGTGGCACTTTGATGCGAGAGGATGCTTCACGGTCAAATCAGCTTACAAGGTGCAAAGGGAGATGGAGAGAAGAGCTAGCAGAAACGGATGCCCTGGGGTCTCAAATTGGGAGAGTGGGGATGATGATTTTTGGAAGAAGCTCTGGAAACTGGGTGTTCCAGGAAAGATCAAACACTTCTTGTGGAGAATGTGCCACAACACGCTGGCGTTGCGTGCTAACCTGCAGCATCGAGGTATGGATGTCGATACTAGATGTGTGATGTGTGGCCGGTATAATGAAGATGCTGGACATCTTTTCTTTAAGTGCAAGCCAGTGAAGAAAGTTTGGCAAGCTTTAAACCTAGAAGAGTTGAGATCCATGCTAGAGCAGCAAACGTCAGGAAAGAATGTGTTACAATCAATTTACTGTCGCCCGGAAATTGAACGAACAAGTGCCATAGTTTGCCTTTGGCAGTGGTGGAAAGAGAGGAATGAAGTAAGAGAAGGAGGAATACCAAGGAGCCCAGCTGAGCTCTCACACCTGATTATGTCACAGGCAGGAGAGTTTGTTAGGATGAATGTAAAGGAAAAAAGCCCCAGAACAGGAGAGTGTGCAGTTTGGAGACGGCCACCCCTGAACTTTGTGAAAATCAACACCGACGGAGCATACAGTAGTAACATGAAGCAGGGAGGATGGGGTTTTGTGATCAGGGATCAGACTGGCGCAGTCCTTCAGGCAGGAGCTGGTCCGGCAGCTTATCTACAAGACGCCTTCCATGCTGAAGTTGTTGCCTGTGCTGCTGCAATCAAGACTGCGAGTGAAAGGGGTTACCTCATAGCAGGTAGCACCGTGGTAGAGCAGATTCTTGACTGGAATTCATTCAACATGGCAAGGGAATACGCGATGCATTCATTGTTAGGAAAACCACATCGGAGGCCTATCAGCTGGTGCAGAACTCAAGTACATGATACTGATTTGAACAAAGTTTTGAAGTTTGAATTGGACCAGTTGAAACCTTTAACTCCAAATGGCTATAAGATTGAACCATTCAACGAGTTACCTTACTTTGGTTGA
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| Protein seq | MGCFELTKDLCDQISKMIAKYWWSNQEKDNKMHWLSWNKLTLPKNMGGLGFRDIYIFNLAMLAKQGWRLIQDPDSLCSRVLRAKYFPLGDCFRPKQTSNVSYTWRSIQKGLRVLQNGMIWRMGDGSKINIWADPWIPRGWSRKPMTPRGANLVTKVEELIDPYTGTWDEDLLSQTFWEEDVAAIKSIPVHVEMEDVLAWHFDARGCFTVKSAYKVQREMERRASRNGCPGVSNWESGDDDFWKKLWKLGVPGKIKHFLWRMCHNTLALRANLQHRGMDVDTRCVMCGRYNEDAGHLFFKCKPVKKVWQALNLEELRSMLEQQTSGKNVLQSIYCRPEIERTSAIVCLWQWWKERNEVREGGIPRSPAELSHLIMSQAGEFVRMNVKEKSPRTGECAVWRRPPLNFVKINTDGAYSSNMKQGGWGFVIRDQTGAVLQAGAGPAAYLQDAFHAEVVACAAAIKTASERGYLIAGSTVVEQILDWNSFNMAREYAMHSLLGKPHRRPISWCRTQVHDTDLNKVLKFELDQLKPLTPNGYKIEPFNELPYFG |
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| Function | Putative ribonuclease H protein At1g65750 [UniProtKB/Swiss-Prot:P0C2F6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g27640 | LOC_Os01g27640.1 | Chr01 | 15413115 | 15415791 | + | MSU_osa1r7 | ||
| CDS seq | ATGGGGTGTTTTGAGTTGACAAAGGATTTGTGCGATCAGATTAGCAAGATGATAGCGAAGTACTGGTGGAGCAACCAGGAGAAGGACAATAAGATGCATTGGTTAAGTTGGAATAAATTGACATTGCCAAAAAATATGGGGGGCTTAGGTTTCAGGGACATTTACATCTTCAACCTAGCGATGCTAGCCAAGCAAGGATGGAGATTGATTCAGGACCCTGACTCTCTGTGCTCAAGGGTTCTTAGAGCTAAATACTTCCCTCTGGGGGACTGTTTCCGGCCAAAGCAGACATCAAATGTTTCCTATACTTGGAGAAGCATACAGAAGGGTCTCAGAGTGTTGCAAAATGGGATGATATGGAGGATGGGAGATGGATCGAAGATTAACATCTGGGCGGATCCCTGGATCCCGAGGGGATGGTCAAGGAAACCTATGACACCCAGAGGCGCTAACCTTGTGACAAAAGTGGAGGAACTGATTGACCCTTATACTGGAACTTGGGATGAAGATTTGCTGTCACAAACTTTTTGGGAAGAGGACGTCGCAGCTATTAAATCCATTCCTGTGCATGTTGAAATGGAGGATGTTTTGGCGTGGCACTTTGATGCGAGAGGATGCTTCACGGTCAAATCAGCTTACAAGGTGCAAAGGGAGATGGAGAGAAGAGCTAGCAGAAACGGATGCCCTGGGGTCTCAAATTGGGAGAGTGGGGATGATGATTTTTGGAAGAAGCTCTGGAAACTGGGTGTTCCAGGAAAGATCAAACACTTCTTGTGGAGAATGTGCCACAACACGCTGGCGTTGCGTGCTAACCTGCAGCATCGAGGTATGGATGTCGATACTAGATGTGTGATGTGTGGCCGGTATAATGAAGATGCTGGACATCTTTTCTTTAAGTGCAAGCCAGTGAAGAAAGTTTGGCAAGCTTTAAACCTAGAAGAGTTGAGATCCATGCTAGAGCAGCAAACGTCAGGAAAGAATGTGTTACAATCAATTTACTGTCGCCCGGAAATTGAACGAACAAGTGCCATAGTTTGCCTTTGGCAGTGGTGGAAAGAGAGGAATGAAGTAAGAGAAGGAGGAATACCAAGGAGCCCAGCTGAGCTCTCACACCTGATTATGTCACAGGCAGGAGAGTTTGTTAGGATGAATGTAAAGGAAAAAAGCCCCAGAACAGGAGAGTGTGCAGTTTGGAGACGGCCACCCCTGAACTTTGTGAAAATCAACACCGACGGAGCATACAGTAGTAACATGAAGCAGGGAGGATGGGGTTTTGTGATCAGGGATCAGACTGGCGCAGTCCTTCAGGCAGGAGCTGGTCCGGCAGCTTATCTACAAGACGCCTTCCATGCTGAAGTTGTTGCCTGTGCTGCTGCAATCAAGACTGCGAGTGAAAGGGGTTACCTCATAGCAGGTAGCACCGTGGTAGAGCAGATTCTTGACTGGAATTCATTCAACATGGCAAGGGAATACGCGATGCATTCATTGTTAGGAAAACCACATCGGAGGCCTATCAGCTGGTGCAGAACTCAAGTACATGATACTGATTTGAACAAAGTTTTGAAGTTTGAATTGGACCAGTTGAAACCTTTAACTCCAAATGGCTATAAGATTGAACCATTCAACGAGTTACCTTACTTTGGTTGA
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| Protein seq | MGCFELTKDLCDQISKMIAKYWWSNQEKDNKMHWLSWNKLTLPKNMGGLGFRDIYIFNLAMLAKQGWRLIQDPDSLCSRVLRAKYFPLGDCFRPKQTSNVSYTWRSIQKGLRVLQNGMIWRMGDGSKINIWADPWIPRGWSRKPMTPRGANLVTKVEELIDPYTGTWDEDLLSQTFWEEDVAAIKSIPVHVEMEDVLAWHFDARGCFTVKSAYKVQREMERRASRNGCPGVSNWESGDDDFWKKLWKLGVPGKIKHFLWRMCHNTLALRANLQHRGMDVDTRCVMCGRYNEDAGHLFFKCKPVKKVWQALNLEELRSMLEQQTSGKNVLQSIYCRPEIERTSAIVCLWQWWKERNEVREGGIPRSPAELSHLIMSQAGEFVRMNVKEKSPRTGECAVWRRPPLNFVKINTDGAYSSNMKQGGWGFVIRDQTGAVLQAGAGPAAYLQDAFHAEVVACAAAIKTASERGYLIAGSTVVEQILDWNSFNMAREYAMHSLLGKPHRRPISWCRTQVHDTDLNKVLKFELDQLKPLTPNGYKIEPFNELPYFG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g29700 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0017500 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0017180 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0017410 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0016770 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0015440 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0239900 | SBH | 0 | 0.018717 | 0.0278125 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0257200 | RBH | 0.1030255 | 0.3509055 | 0.6353225 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0015280 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0015480 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0015430 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0015200 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G017170 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0015450 | RBH | 0.0 | 0.0 | 0.0 |
