Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g27600 | OGI:01039890 | 15/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:15393438-15395769 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GATTGATTTTACTATCTCGATCGAGTTGGTCGCCAATTCGCCATGGCCAGCAGCCTCATCAACCTCCTCCTCACGGAGGTGGCGGCCATCGTCAGCATCGTCCTCCTCGCCCTCCTCGTCGTGCTCAGCTCCTACCGCCGCCGCTCCGGCCACCCGGCGCTCCGCCTCTTCGTCTGGGCGGCCTCCACGCTCTTCCTCCCGCTCGTCTCCTACGCCGTCTCCGCCGCCGCCAAGTGGGACGCCGCGCGCGTCCCGCTCCTCCTCGCCTGGACCGTCTTCCTCCAGATGCTGCGCAACACCATCGACACCGCCCGCTCGTCCTCGTCCACGATCGGCAACGGCAGCGGCAGCAGCAAGTTCAGGCCCTCCGTCGAGCAGCTGGCGAGGATGGGCTGGGTGGCGTTCCTCATTGTCAGCAGCGACGGCACCGCCGGGAGCCCACAGCTCACCGGGGTGCTCCTGTGGCTGTGGGTGCTCAGCCTCGCCAAGCTCGTCCACCGCCTCGTTGCCGCCGAGCTCGCCAAGAACTCGTTCGCCGTCGGCCTTAACGCCTACCTCATCTCCGACTACATGAAGCAGCTGTACGGGCAAGACCAAGGAGACCACGACGTGCAAGCTCCTCCGTTGTTGGTGATGGGCGAGGAGAAGCTGCAAATCGAGGCGAGGCCACAGGGGTACCGCATTGGCCGGACATCGCCGCCGCCATTGTGCGTCGACGCCGGGCATGTGGTCACCATGGACCGGATATGCCGGCTGTTCTCCTCCGGCGATCCACTCGTCGCTTCTAACCCGCAGATCAAGGACACATGCCTCTCGTTCGCCCTGTTCAAGCTGCAGCTCCGGCGGTTCGTCGGGTGCCCCATCGCCGAGGCGGGCTCTCGCCGTTCGGTGGCGTTCGTGCTCGACGGCCTCCTCGGCGAGAGCCACGAGCGGGTGTTCCGGGTGATCGAGACCGAGCTGTCCTTCCTCGCCGACTTCCTCTACTCCAAGCTCACCGTCTTCTACGCGAGCGGGTGGTGGTTCCCGGTGCTCAACTCGATGCTCGTGTTCGCCACGTGGGTCAGCTGCCTCGCCGCCGGCGGCGCCATCGTGCACGACATGACGTGCCACGGCACGACGCTCGCCAGCAACTACGACAACCTGAGGGAGTACCTGCAGAACCACGACACCGTGTTCCACATCATCGTCGGCCTCGACGTGCTCGTCACCGTCTCCTTCATCGTCGCCATCGTGTTCACGGAGGGGTGGGAGATCGCTACCTACGTCCGCTCCGACTGGATCAAGGTGTCCGCCATCTGCGAGTACGCGCGCCGGCCGTCATGGCGCAAGTCGCCATGGACTCGCCGCAACGTCGGCCGAGTTCTCCCGCTCAAGCCAATGCAGCGCTGGGACGATCGGTTCGGGCAGACGTCCATCCTGCAGCTCCGTCCGTGCTACTGTGGCTGCGTCTCCCGGCAGGTTGACCGGATCGCCAAGTCGTCGGCCACTGTGCCGGCGGCGGTGAAGACGGCCGTCGTGGACACGCTAAGGACGAACCAAGGAAACCTGGGAAACGGCGTGCTCTCGTTGCAGCGGAACGGCGTCGCCGACAAGCTCGCCTGGGCGTGCCACCACGCCGGCGACGAGAGAAGCGTCTCCGAGCAGATCCTGGTATGGCATGTGGCGACCAGGCTTCTCGAGATCATGCGATCAGAAGGCGCTCACGGGAGACACGACGACGGAGACGGCGACGGCGGCGGAGACAGCGACACGGTGGTCGTCGCGACACGGCTGTCGCGGTACTGCGCCTACCTGGTGGCGCTGAAGCCGGAGCTCCTGCCGGACCACCCGGCCTGGACGGAGGAGCTGTACGAGGGCGTGGTGGAGGAGGTGTCGAGGGTGCTCGCGCGGTTCGCAGGGGCGGTGGTGCGGTACGAGCGCGCGGCGACGTGCCTCGGCGGGAGCACGAACGCGACGCTGAGGAAGGCGGCCAAGCTCGGGCGGCAGCTGGCGGAGGAGCTCGGCGGCGACGAGGAGTTGCCCTGGAGGGTGCTTGCCGATTTCTGGGCGGAGCTCGTCGTCTACCTCGCGCCGTCGGAGAACGTCACGGCGCATTCCAAGGCGCTCCGCCGTGGCGGCGAGTTCATCACCGTGCTGTGGGCGTTGCTCGGCCACGCCGGCATTGTTAGCCGGCCGGACACTGACGTCTGACTGACAGTGTGAGTGTGGTTTATGGCGAACACATGGTTTTCTTTCCGCTTTTGTCATTGTGTATACCAAACTGTCGACATGAGATGTGTTTGCCAAACTGTCGACAATTTATTTCTGATTTGCAATAGTAAAACAGTTTCCA
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| CDS seq | ATGGCCAGCAGCCTCATCAACCTCCTCCTCACGGAGGTGGCGGCCATCGTCAGCATCGTCCTCCTCGCCCTCCTCGTCGTGCTCAGCTCCTACCGCCGCCGCTCCGGCCACCCGGCGCTCCGCCTCTTCGTCTGGGCGGCCTCCACGCTCTTCCTCCCGCTCGTCTCCTACGCCGTCTCCGCCGCCGCCAAGTGGGACGCCGCGCGCGTCCCGCTCCTCCTCGCCTGGACCGTCTTCCTCCAGATGCTGCGCAACACCATCGACACCGCCCGCTCGTCCTCGTCCACGATCGGCAACGGCAGCGGCAGCAGCAAGTTCAGGCCCTCCGTCGAGCAGCTGGCGAGGATGGGCTGGGTGGCGTTCCTCATTGTCAGCAGCGACGGCACCGCCGGGAGCCCACAGCTCACCGGGGTGCTCCTGTGGCTGTGGGTGCTCAGCCTCGCCAAGCTCGTCCACCGCCTCGTTGCCGCCGAGCTCGCCAAGAACTCGTTCGCCGTCGGCCTTAACGCCTACCTCATCTCCGACTACATGAAGCAGCTGTACGGGCAAGACCAAGGAGACCACGACGTGCAAGCTCCTCCGTTGTTGGTGATGGGCGAGGAGAAGCTGCAAATCGAGGCGAGGCCACAGGGGTACCGCATTGGCCGGACATCGCCGCCGCCATTGTGCGTCGACGCCGGGCATGTGGTCACCATGGACCGGATATGCCGGCTGTTCTCCTCCGGCGATCCACTCGTCGCTTCTAACCCGCAGATCAAGGACACATGCCTCTCGTTCGCCCTGTTCAAGCTGCAGCTCCGGCGGTTCGTCGGGTGCCCCATCGCCGAGGCGGGCTCTCGCCGTTCGGTGGCGTTCGTGCTCGACGGCCTCCTCGGCGAGAGCCACGAGCGGGTGTTCCGGGTGATCGAGACCGAGCTGTCCTTCCTCGCCGACTTCCTCTACTCCAAGCTCACCGTCTTCTACGCGAGCGGGTGGTGGTTCCCGGTGCTCAACTCGATGCTCGTGTTCGCCACGTGGGTCAGCTGCCTCGCCGCCGGCGGCGCCATCGTGCACGACATGACGTGCCACGGCACGACGCTCGCCAGCAACTACGACAACCTGAGGGAGTACCTGCAGAACCACGACACCGTGTTCCACATCATCGTCGGCCTCGACGTGCTCGTCACCGTCTCCTTCATCGTCGCCATCGTGTTCACGGAGGGGTGGGAGATCGCTACCTACGTCCGCTCCGACTGGATCAAGGTGTCCGCCATCTGCGAGTACGCGCGCCGGCCGTCATGGCGCAAGTCGCCATGGACTCGCCGCAACGTCGGCCGAGTTCTCCCGCTCAAGCCAATGCAGCGCTGGGACGATCGGTTCGGGCAGACGTCCATCCTGCAGCTCCGTCCGTGCTACTGTGGCTGCGTCTCCCGGCAGGTTGACCGGATCGCCAAGTCGTCGGCCACTGTGCCGGCGGCGGTGAAGACGGCCGTCGTGGACACGCTAAGGACGAACCAAGGAAACCTGGGAAACGGCGTGCTCTCGTTGCAGCGGAACGGCGTCGCCGACAAGCTCGCCTGGGCGTGCCACCACGCCGGCGACGAGAGAAGCGTCTCCGAGCAGATCCTGGTATGGCATGTGGCGACCAGGCTTCTCGAGATCATGCGATCAGAAGGCGCTCACGGGAGACACGACGACGGAGACGGCGACGGCGGCGGAGACAGCGACACGGTGGTCGTCGCGACACGGCTGTCGCGGTACTGCGCCTACCTGGTGGCGCTGAAGCCGGAGCTCCTGCCGGACCACCCGGCCTGGACGGAGGAGCTGTACGAGGGCGTGGTGGAGGAGGTGTCGAGGGTGCTCGCGCGGTTCGCAGGGGCGGTGGTGCGGTACGAGCGCGCGGCGACGTGCCTCGGCGGGAGCACGAACGCGACGCTGAGGAAGGCGGCCAAGCTCGGGCGGCAGCTGGCGGAGGAGCTCGGCGGCGACGAGGAGTTGCCCTGGAGGGTGCTTGCCGATTTCTGGGCGGAGCTCGTCGTCTACCTCGCGCCGTCGGAGAACGTCACGGCGCATTCCAAGGCGCTCCGCCGTGGCGGCGAGTTCATCACCGTGCTGTGGGCGTTGCTCGGCCACGCCGGCATTGTTAGCCGGCCGGACACTGACGTCTGA
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| Protein seq | MASSLINLLLTEVAAIVSIVLLALLVVLSSYRRRSGHPALRLFVWAASTLFLPLVSYAVSAAAKWDAARVPLLLAWTVFLQMLRNTIDTARSSSSTIGNGSGSSKFRPSVEQLARMGWVAFLIVSSDGTAGSPQLTGVLLWLWVLSLAKLVHRLVAAELAKNSFAVGLNAYLISDYMKQLYGQDQGDHDVQAPPLLVMGEEKLQIEARPQGYRIGRTSPPPLCVDAGHVVTMDRICRLFSSGDPLVASNPQIKDTCLSFALFKLQLRRFVGCPIAEAGSRRSVAFVLDGLLGESHERVFRVIETELSFLADFLYSKLTVFYASGWWFPVLNSMLVFATWVSCLAAGGAIVHDMTCHGTTLASNYDNLREYLQNHDTVFHIIVGLDVLVTVSFIVAIVFTEGWEIATYVRSDWIKVSAICEYARRPSWRKSPWTRRNVGRVLPLKPMQRWDDRFGQTSILQLRPCYCGCVSRQVDRIAKSSATVPAAVKTAVVDTLRTNQGNLGNGVLSLQRNGVADKLAWACHHAGDERSVSEQILVWHVATRLLEIMRSEGAHGRHDDGDGDGGGDSDTVVVATRLSRYCAYLVALKPELLPDHPAWTEELYEGVVEEVSRVLARFAGAVVRYERAATCLGGSTNATLRKAAKLGRQLAEELGGDEELPWRVLADFWAELVVYLAPSENVTAHSKALRRGGEFITVLWALLGHAGIVSRPDTDV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g27600 | LOC_Os01g27600.1 | Chr01 | 15393438 | 15395769 | + | MSU_osa1r7 | ||
| CDS seq | ATGGCCAGCAGCCTCATCAACCTCCTCCTCACGGAGGTGGCGGCCATCGTCAGCATCGTCCTCCTCGCCCTCCTCGTCGTGCTCAGCTCCTACCGCCGCCGCTCCGGCCACCCGGCGCTCCGCCTCTTCGTCTGGGCGGCCTCCACGCTCTTCCTCCCGCTCGTCTCCTACGCCGTCTCCGCCGCCGCCAAGTGGGACGCCGCGCGCGTCCCGCTCCTCCTCGCCTGGACCGTCTTCCTCCAGATGCTGCGCAACACCATCGACACCGCCCGCTCGTCCTCGTCCACGATCGGCAACGGCAGCGGCAGCAGCAAGTTCAGGCCCTCCGTCGAGCAGCTGGCGAGGATGGGCTGGGTGGCGTTCCTCATTGTCAGCAGCGACGGCACCGCCGGGAGCCCACAGCTCACCGGGGTGCTCCTGTGGCTGTGGGTGCTCAGCCTCGCCAAGCTCGTCCACCGCCTCGTTGCCGCCGAGCTCGCCAAGAACTCGTTCGCCGTCGGCCTTAACGCCTACCTCATCTCCGACTACATGAAGCAGCTGTACGGGCAAGACCAAGGAGACCACGACGTGCAAGCTCCTCCGTTGTTGGTGATGGGCGAGGAGAAGCTGCAAATCGAGGCGAGGCCACAGGGGTACCGCATTGGCCGGACATCGCCGCCGCCATTGTGCGTCGACGCCGGGCATGTGGTCACCATGGACCGGATATGCCGGCTGTTCTCCTCCGGCGATCCACTCGTCGCTTCTAACCCGCAGATCAAGGACACATGCCTCTCGTTCGCCCTGTTCAAGCTGCAGCTCCGGCGGTTCGTCGGGTGCCCCATCGCCGAGGCGGGCTCTCGCCGTTCGGTGGCGTTCGTGCTCGACGGCCTCCTCGGCGAGAGCCACGAGCGGGTGTTCCGGGTGATCGAGACCGAGCTGTCCTTCCTCGCCGACTTCCTCTACTCCAAGCTCACCGTCTTCTACGCGAGCGGGTGGTGGTTCCCGGTGCTCAACTCGATGCTCGTGTTCGCCACGTGGGTCAGCTGCCTCGCCGCCGGCGGCGCCATCGTGCACGACATGACGTGCCACGGCACGACGCTCGCCAGCAACTACGACAACCTGAGGGAGTACCTGCAGAACCACGACACCGTGTTCCACATCATCGTCGGCCTCGACGTGCTCGTCACCGTCTCCTTCATCGTCGCCATCGTGTTCACGGAGGGGTGGGAGATCGCTACCTACGTCCGCTCCGACTGGATCAAGGTGTCCGCCATCTGCGAGTACGCGCGCCGGCCGTCATGGCGCAAGTCGCCATGGACTCGCCGCAACGTCGGCCGAGTTCTCCCGCTCAAGCCAATGCAGCGCTGGGACGATCGGTTCGGGCAGACGTCCATCCTGCAGCTCCGTCCGTGCTACTGTGGCTGCGTCTCCCGGCAGGTTGACCGGATCGCCAAGTCGTCGGCCACTGTGCCGGCGGCGGTGAAGACGGCCGTCGTGGACACGCTAAGGACGAACCAAGGAAACCTGGGAAACGGCGTGCTCTCGTTGCAGCGGAACGGCGTCGCCGACAAGCTCGCCTGGGCGTGCCACCACGCCGGCGACGAGAGAAGCGTCTCCGAGCAGATCCTGGTATGGCATGTGGCGACCAGGCTTCTCGAGATCATGCGATCAGAAGGCGCTCACGGGAGACACGACGACGGAGACGGCGACGGCGGCGGAGACAGCGACACGGTGGTCGTCGCGACACGGCTGTCGCGGTACTGCGCCTACCTGGTGGCGCTGAAGCCGGAGCTCCTGCCGGACCACCCGGCCTGGACGGAGGAGCTGTACGAGGGCGTGGTGGAGGAGGTGTCGAGGGTGCTCGCGCGGTTCGCAGGGGCGGTGGTGCGGTACGAGCGCGCGGCGACGTGCCTCGGCGGGAGCACGAACGCGACGCTGAGGAAGGCGGCCAAGCTCGGGCGGCAGCTGGCGGAGGAGCTCGGCGGCGACGAGGAGTTGCCCTGGAGGGTGCTTGCCGATTTCTGGGCGGAGCTCGTCGTCTACCTCGCGCCGTCGGAGAACGTCACGGCGCATTCCAAGGCGCTCCGCCGTGGCGGCGAGTTCATCACCGTGCTGTGGGCGTTGCTCGGCCACGCCGGCATTGTTAGCCGGCCGGACACTGACGTCTGA
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| Protein seq | MASSLINLLLTEVAAIVSIVLLALLVVLSSYRRRSGHPALRLFVWAASTLFLPLVSYAVSAAAKWDAARVPLLLAWTVFLQMLRNTIDTARSSSSTIGNGSGSSKFRPSVEQLARMGWVAFLIVSSDGTAGSPQLTGVLLWLWVLSLAKLVHRLVAAELAKNSFAVGLNAYLISDYMKQLYGQDQGDHDVQAPPLLVMGEEKLQIEARPQGYRIGRTSPPPLCVDAGHVVTMDRICRLFSSGDPLVASNPQIKDTCLSFALFKLQLRRFVGCPIAEAGSRRSVAFVLDGLLGESHERVFRVIETELSFLADFLYSKLTVFYASGWWFPVLNSMLVFATWVSCLAAGGAIVHDMTCHGTTLASNYDNLREYLQNHDTVFHIIVGLDVLVTVSFIVAIVFTEGWEIATYVRSDWIKVSAICEYARRPSWRKSPWTRRNVGRVLPLKPMQRWDDRFGQTSILQLRPCYCGCVSRQVDRIAKSSATVPAAVKTAVVDTLRTNQGNLGNGVLSLQRNGVADKLAWACHHAGDERSVSEQILVWHVATRLLEIMRSEGAHGRHDDGDGDGGGDSDTVVVATRLSRYCAYLVALKPELLPDHPAWTEELYEGVVEEVSRVLARFAGAVVRYERAATCLGGSTNATLRKAAKLGRQLAEELGGDEELPWRVLADFWAELVVYLAPSENVTAHSKALRRGGEFITVLWALLGHAGIVSRPDTDV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0373500 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0373500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0017470 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0017150 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0017380 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0016740 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0016790 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0016940 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0256800 | RBH | 0.044978 | 0.006201 | 0.0884655 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0016780 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0016770 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0017020 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0016770 | RBH | 0.0 | 0.0 | 0.036198 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0016640 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G017140 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0016880 | RBH | 0.0 | 0.0 | 0.0 |
