Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g22920 | OGI:01038490 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:12884474-12885551 | ||||||||
| Gene Symbol | GA2OX2, OsGA2ox2, ga2ox 2, OsGA2ox-2 | ||||||||||
| DNA seq | CTAAAACTCGATGTCAATTTTGTTCCTAGAATTGAAACATGTATACTATGTTATAATATAAATTTGAAAAAAATATAATTTAATGTGTGTCATTACCAATATGAAACAAAATGTTGGAATATAGAGACAAGCAATACAAATTCATTGAAACTAAAACTCGCACTAAATTCATAATAAACTTGAAAGTTTTAGTGTTGGGCAAAATTTAGGTTATGCATGTGTAACAGTGTAAGTTTATTAATTAGTCGAACGAAAAAGAAGGGGAAAAAATTCAGGCGATTGACAAATAACAAATAAGTTGTTACCGTTTTTTTCCATATAACTTGATCCAGATCATTAATATAAACGTGATCATATGCATTGTTTATCATATAAATTAAGAAGCAATGAACCACATACACAGTCAAACACAGCTGCTAATTAATCAGAGAAAGAAAACGAAGCCGTTTATAATTTTCGGAGAGACAAGAAATGTTACGATATACTATAGATGATACGTTGCGCACGAGCGCAATGTGATTCGTGATCGATTAAAATTTCGCGCATATGCTGCATGTATAGCTATAGCGTACCTGAACCGTCGAGGGTCTTCCCTGTCGATGGCGCTGGCCTTGCGCGCCACCGCGTCGGGGCTCGCGTGCAGGATCAGGTACTCCAGCTCGCCGACGTCGCCGTTCGCCCCGATGCTCCGGCTGCCGTAGCCCAGCGGGTCGGGCGGCCCGGCGAGCTGCTTCTCGGCCCCCGCCCGCACGAAGAACGCCGCCGCGGCGGCGTCCATCGCCGCGGACACCCGCGGCGGCACGCCGTGGTTGACGGCCCTGAAGAAGCCGCTCCCGGCGCACGCCCGCGCCACCTGCCGCGACAGCTCGCCGCGCCCCGCCGGCGCCGACATGTCGACCGTCGGGACGACGACGCCCCGGCCGCGCCGACAGAACACGGCGGCCGCAGCTGCCGCCGCCGCCTCCCGGCGGCCGCATTCCGGCGCAGCAGCAGCCGGCACCACCATGGCGTTAATGTTGCTGCTGTGGCTGCTTCTGATGCTGCTCCTGCACTTGTGCTGTTGTGCAGATGGTGGCAT
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| CDS seq | ATGCCACCATCTGCACAACAGCACAAGTGCAGGAGCAGCATCAGAAGCAGCCACAGCAGCAACATTAACGCCATGGTGGTGCCGGCTGCTGCTGCGCCGGAATGCGGCCGCCGGGAGGCGGCGGCGGCAGCTGCGGCCGCCGTGTTCTGTCGGCGCGGCCGGGGCGTCGTCGTCCCGACGGTCGACATGTCGGCGCCGGCGGGGCGCGGCGAGCTGTCGCGGCAGGTGGCGCGGGCGTGCGCCGGGAGCGGCTTCTTCAGGGCCGTCAACCACGGCGTGCCGCCGCGGGTGTCCGCGGCGATGGACGCCGCCGCGGCGGCGTTCTTCGTGCGGGCGGGGGCCGAGAAGCAGCTCGCCGGGCCGCCCGACCCGCTGGGCTACGGCAGCCGGAGCATCGGGGCGAACGGCGACGTCGGCGAGCTGGAGTACCTGATCCTGCACGCGAGCCCCGACGCGGTGGCGCGCAAGGCCAGCGCCATCGACAGGGAAGACCCTCGACGGTTCAGGAACAAAATTGACATCGAGTTTTAG
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| Protein seq | MPPSAQQHKCRSSIRSSHSSNINAMVVPAAAAPECGRREAAAAAAAAVFCRRGRGVVVPTVDMSAPAGRGELSRQVARACAGSGFFRAVNHGVPPRVSAAMDAAAAAFFVRAGAEKQLAGPPDPLGYGSRSIGANGDVGELEYLILHASPDAVARKASAIDREDPRRFRNKIDIEF |
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| Function | Gibberellin 2-beta-dioxygenase 2 [UniProtKB/Swiss-Prot:Q5ZA21] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g22920 | LOC_Os01g22920.1 | Chr01 | 12884474 | 12885551 | - | MSU_osa1r7 | ||
| CDS seq | ATGCCACCATCTGCACAACAGCACAAGTGCAGGAGCAGCATCAGAAGCAGCCACAGCAGCAACATTAACGCCATGGTGGTGCCGGCTGCTGCTGCGCCGGAATGCGGCCGCCGGGAGGCGGCGGCGGCAGCTGCGGCCGCCGTGTTCTGTCGGCGCGGCCGGGGCGTCGTCGTCCCGACGGTCGACATGTCGGCGCCGGCGGGGCGCGGCGAGCTGTCGCGGCAGGTGGCGCGGGCGTGCGCCGGGAGCGGCTTCTTCAGGGCCGTCAACCACGGCGTGCCGCCGCGGGTGTCCGCGGCGATGGACGCCGCCGCGGCGGCGTTCTTCGTGCGGGCGGGGGCCGAGAAGCAGCTCGCCGGGCCGCCCGACCCGCTGGGCTACGGCAGCCGGAGCATCGGGGCGAACGGCGACGTCGGCGAGCTGGAGTACCTGATCCTGCACGCGAGCCCCGACGCGGTGGCGCGCAAGGCCAGCGCCATCGACAGGGAAGACCCTCGACGGTTCAGGAACAAAATTGACATCGAGTTTTAG
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| Protein seq | MPPSAQQHKCRSSIRSSHSSNINAMVVPAAAAPECGRREAAAAAAAAVFCRRGRGVVVPTVDMSAPAGRGELSRQVARACAGSGFFRAVNHGVPPRVSAAMDAAAAAFFVRAGAEKQLAGPPDPLGYGSRSIGANGDVGELEYLILHASPDAVARKASAIDREDPRRFRNKIDIEF |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0332200 | RBH | 1.214227 | 0.144041 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g06670 | SBH | 0.153728 | 0.000000 | 11.322511 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0332200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0015350 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0015120 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0015370 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0014850 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0014900 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0213400 | RBH | 0.1048835 | 0.1527485 | 0.031569 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0014800 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0209700 | RBH | 0.1480735 | 0.0385965 | 0.2532245 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0014800 | RBH | 0.142606 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0014720 | RBH | 0.215105 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0014800 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0014910 | RBH | 0.000000 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0014620 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G015010 | RBH | 0.0 | 0.000000 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0014820 | RBH | 0.850474 | 0.0 | 0.0 |
