Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g19380 | OGI:01033320 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:10965000-10968073 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGTCTCAGAAGCACGCGACCACCCTCATCAGCTCCCTGTGCTCGCGCGGCGCGGTCTGCCACGCCCGCGCACTGTTCGACGAAATGCCCGAACGCGACGTCGTGGCGTGGACGGCCATGCTCTCCGGGTACGCCTCCAACGGGCTCCGCCGCGAGGCGCTGGACGTGTTCCGGCGCATGGTCGCCGCGGGCGCCGCCCCCAACGAGTACACGCTGTCCAGCGTCCTGACCGCGTGCCGCGGCCCCTGCGCCCCCGCGATGGCGATGCCCCTGCACGCCGTCGCGGTGCGGCGGGGCGTGGACCGCATGCCGTACGTCGTGAACGCGCTCATCGACTCCTACGCGTCGCTCGCGGAGGGCGTCGTGGACGCGAGGAGGCTGTTCGATGCGTTGGGGAGCGGGCGCACGGCCGCGTCGTGGACGTCGATGATCGCTGGGTATGCCAGGTGGGGACAGGAGCGCACGGGGCTGCGGTTGTTCAAGACGATGCTTAAGGTGTGGATATCTCCTACTCTTCGCAAATCATCTATGCTGCGCTGCTTTGTGCAATTTCCTGTTATTGTCATGTGTTTAGTAAAAACTGGATAGAAAAATTATTTTGTTACTGTGGCTATGTGACCAAGCGAACCCTATGACCTTCATTGTTGTAGTACAAATCAGAAATAATGGGTATTGGTCCTCAAGTTCAAATATAAGTTTTCATACAAATCAAATACAAATTTTACGGTTTATGCTGCCAACAGGAAATTGATATTGCCAGATTCATTATGATTATATGTCCTTTTTCATTTTATACTATTTGTGCAGTGCAGGATGGTGTCGAATTGAGCACATTTGCATGCTCTATTGCACTCCATGCATGTACATTAGTAATCGACTTATGTCTTGGGCAGCAACTTCATTTGCAGTGCATAAAGAAAGCTCTTGATGTGAACCTTGCTGTTGTAAATTCTCTGATCGACATGTACTGCACTTGTGCAAGAATTTTGGATGCAAGAAGCCTTTTTGATGGAACTCCTGAGAGGAACTTGATCACTTGGAATACCATGATTGCTGGGTATAGCCAATGTGATCCTCTAATGGCCTTGCAGCTCCTTCTTGAGATGAATGATGAGCCAAATTGCTTCACTCTAACTAGCATTACATCAGCCTGTGCTGATCTTGCGGCGCTGAGATGCGGGAAGCAGGTTCATGGGGCCGTTCTTCGGAGAAGTTACAGTGATGACCTACAAATGGGCAATGCCCTCGTGGACATGTACTCAAAGTGTGGGAGCATAACAAATGCAAAAAATGTGTTCGACAGGATGGGTTGCAAGGACAAGTTTTCATGGACATCGATGATTGCTGGGTATGGAATGAATGGTTATGGAAATGAGGCTGTCCAACTTTTCAGTTCCATGATCCATGCTGGGGTGCATCCTGACCATGTTGTGTTCCTGAGCCTAATAAGTTCTTGCAGCCATGCTGGTTTAGTAGATGAAGGATGGAATTTCTTCAGGTCAATGATAAATGAGTATAATTTGCAGCCTAACAAGGAGGTTTATGGTAGTGTCGTCAATCTCCTTGCTCGTGCTGGTAGGCTGAGAGAAGCCTTGGACCTAATTGATACGATGCCATTTGCTCCTGATGAATATGTTTGGGGAGCATTGCTTGGTGCCTCCAAGATGCATAATAATGTGGAGATGGGCAGACTAGCTGCAAGAAAGATCACTGAGATCAATCCTGATGATGTGAAGAATTATATCATGCTTGCAAGTATATATGCTGCAGGTAGTAAATGGGGCGAGTATGCTTTTACAAGGAGGTCTTTGAGAGGCATAGGGAGCAGGAAGGAGGCTGGAATCAGTTGGATAGAGGTAATGGATAAGATGTATAGCTTTACTGCAGCTGACAGTAGCAGCCCTCAAGTTTGTTTGGCAGATGAAGTATTGCATATCTTGTCTCAACACATGGATGATGTTGGAAGTGAATTTTGCCACATTATCTTTAAAGCTACATAACTCATTGGTGTTTGAACACTCGATCAGTTGAAATCAAACATTTGCTTAGATTGGTGCTGGAGTTTGGTGTTGTGAGTTGTGAAGTACCTGTTCAGAACCAAACAATTGTAGACGAAATCTAATGAAGATACAAGAGGTACCTCTGGATCTTCAGAAAAACTTTAACTAGTTATTAAAGCAAATATACCTAGAGAAATACCAATCTATTTATTCTCTCAATTTTATGGTTTATGGTTTCCCACTTGCATATGGAAAACAAGTAATCATGATTTTTTTTTCGCTGTTAGTTCTTGCTATATACTAATGATCCAAATTTGAGCTTTCATGCAACGTACGAAATTCATTTACGAGTTATGACAACAATTAATAATCCTAGGAATGAAAGAGCTGTGGACCTGAACATTGATTGGAAATATTTATTGGAATTATTCAGTTAGCTCTAAATTGGTGTTGGAATTAATTTGATAGCAGCTGGGACAGTGAAATCAATTGATTGGGAGGATCTTGCAATCCCTCAAGGCTTCTGTGGCCCTGTTTACCTCCTAGCAACACCCTCTACGTTATATTGAAAACATATCTTTTAGAGTGATTGGTAAATATGATAGCAAATATAGTAACAAAGAGGTGAGTGGTGTCTTATACCTGAAGAAAGAGTTAAAACATTTTCAGCAAAACAACTGAACGGATATTAGGTGAGGATGGTTTCTACAAGCTTCGCTAGTAGGAAATTTTTCTTTGTTGTTCCCCTGTATTATGTCTGATGCAACAGGAGAACCTCTGAGAATATTTACTGATATTGGGTGGTCATGGTTGGTACAAGCATCTCTAGTAGTACTTCTTGCTTTGTTTGTGCCCCTGTATATATGTCTGAGTGCAATAGGAGAACCATTAAACTAAGCATAATCAATTTTTATGACTTGTGTTTCTTAACATGAGCTCTGAATTTTGAGGATTGAGCTGCTCCTTCGCTTCTACTTCTGAGTACTAACCTGGTACACAGCTTTTGGATGGCTTTATGTATCATCTATGCAGCTTTCACAAGCTAAGAAGGCTGAGTATGGTGCATTTTATTAG
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| CDS seq | ATGTCTCAGAAGCACGCGACCACCCTCATCAGCTCCCTGTGCTCGCGCGGCGCGGTCTGCCACGCCCGCGCACTGTTCGACGAAATGCCCGAACGCGACGTCGTGGCGTGGACGGCCATGCTCTCCGGGTACGCCTCCAACGGGCTCCGCCGCGAGGCGCTGGACGTGTTCCGGCGCATGGTCGCCGCGGGCGCCGCCCCCAACGAGTACACGCTGTCCAGCGTCCTGACCGCGTGCCGCGGCCCCTGCGCCCCCGCGATGGCGATGCCCCTGCACGCCGTCGCGGTGCGGCGGGGCGTGGACCGCATGCCGTACGTCGTGAACGCGCTCATCGACTCCTACGCGTCGCTCGCGGAGGGCGTCGTGGACGCGAGGAGGCTGTTCGATGCGTTGGGGAGCGGGCGCACGGCCGCGTCGTGGACGTCGATGATCGCTGGGTATGCCAGGTGGGGACAGGAGCGCACGGGGCTGCGGTTGTTCAAGACGATGCTTAAGGATGGTGTCGAATTGAGCACATTTGCATGCTCTATTGCACTCCATGCATGTACATTAGTAATCGACTTATGTCTTGGGCAGCAACTTCATTTGCAGTGCATAAAGAAAGCTCTTGATGTGAACCTTGCTGTTGTAAATTCTCTGATCGACATGTACTGCACTTGTGCAAGAATTTTGGATGCAAGAAGCCTTTTTGATGGAACTCCTGAGAGGAACTTGATCACTTGGAATACCATGATTGCTGGGTATAGCCAATGTGATCCTCTAATGGCCTTGCAGCTCCTTCTTGAGATGAATGATGAGCCAAATTGCTTCACTCTAACTAGCATTACATCAGCCTGTGCTGATCTTGCGGCGCTGAGATGCGGGAAGCAGGTTCATGGGGCCGTTCTTCGGAGAAGTTACAGTGATGACCTACAAATGGGCAATGCCCTCGTGGACATGTACTCAAAGTGTGGGAGCATAACAAATGCAAAAAATGTGTTCGACAGGATGGGTTGCAAGGACAAGTTTTCATGGACATCGATGATTGCTGGGTATGGAATGAATGGTTATGGAAATGAGGCTGTCCAACTTTTCAGTTCCATGATCCATGCTGGGGTGCATCCTGACCATGTTGTGTTCCTGAGCCTAATAAGTTCTTGCAGCCATGCTGGTTTAGTAGATGAAGGATGGAATTTCTTCAGGTCAATGATAAATGAGTATAATTTGCAGCCTAACAAGGAGGTTTATGGTAGTGTCGTCAATCTCCTTGCTCGTGCTGGTAGTAAATGGGGCGAGTATGCTTTTACAAGGAGGTCTTTGAGAGGCATAGGGAGCAGGAAGGAGGCTGGAATCAGTTGGATAGAGCTTTCACAAGCTAAGAAGGCTGAGTATGGTGCATTTTATTAG
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| Protein seq | MSQKHATTLISSLCSRGAVCHARALFDEMPERDVVAWTAMLSGYASNGLRREALDVFRRMVAAGAAPNEYTLSSVLTACRGPCAPAMAMPLHAVAVRRGVDRMPYVVNALIDSYASLAEGVVDARRLFDALGSGRTAASWTSMIAGYARWGQERTGLRLFKTMLKDGVELSTFACSIALHACTLVIDLCLGQQLHLQCIKKALDVNLAVVNSLIDMYCTCARILDARSLFDGTPERNLITWNTMIAGYSQCDPLMALQLLLEMNDEPNCFTLTSITSACADLAALRCGKQVHGAVLRRSYSDDLQMGNALVDMYSKCGSITNAKNVFDRMGCKDKFSWTSMIAGYGMNGYGNEAVQLFSSMIHAGVHPDHVVFLSLISSCSHAGLVDEGWNFFRSMINEYNLQPNKEVYGSVVNLLARAGSKWGEYAFTRRSLRGIGSRKEAGISWIELSQAKKAEYGAFY |
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| Function | Putative pentatricopeptide repeat-containing protein At1g56570 [UniProtKB/Swiss-Prot:Q9FXA9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g19380 | LOC_Os01g19380.1 | Chr01 | 10965000 | 10968073 | + | MSU_osa1r7 | ||
| CDS seq | ATGTCTCAGAAGCACGCGACCACCCTCATCAGCTCCCTGTGCTCGCGCGGCGCGGTCTGCCACGCCCGCGCACTGTTCGACGAAATGCCCGAACGCGACGTCGTGGCGTGGACGGCCATGCTCTCCGGGTACGCCTCCAACGGGCTCCGCCGCGAGGCGCTGGACGTGTTCCGGCGCATGGTCGCCGCGGGCGCCGCCCCCAACGAGTACACGCTGTCCAGCGTCCTGACCGCGTGCCGCGGCCCCTGCGCCCCCGCGATGGCGATGCCCCTGCACGCCGTCGCGGTGCGGCGGGGCGTGGACCGCATGCCGTACGTCGTGAACGCGCTCATCGACTCCTACGCGTCGCTCGCGGAGGGCGTCGTGGACGCGAGGAGGCTGTTCGATGCGTTGGGGAGCGGGCGCACGGCCGCGTCGTGGACGTCGATGATCGCTGGGTATGCCAGGTGGGGACAGGAGCGCACGGGGCTGCGGTTGTTCAAGACGATGCTTAAGGATGGTGTCGAATTGAGCACATTTGCATGCTCTATTGCACTCCATGCATGTACATTAGTAATCGACTTATGTCTTGGGCAGCAACTTCATTTGCAGTGCATAAAGAAAGCTCTTGATGTGAACCTTGCTGTTGTAAATTCTCTGATCGACATGTACTGCACTTGTGCAAGAATTTTGGATGCAAGAAGCCTTTTTGATGGAACTCCTGAGAGGAACTTGATCACTTGGAATACCATGATTGCTGGGTATAGCCAATGTGATCCTCTAATGGCCTTGCAGCTCCTTCTTGAGATGAATGATGAGCCAAATTGCTTCACTCTAACTAGCATTACATCAGCCTGTGCTGATCTTGCGGCGCTGAGATGCGGGAAGCAGGTTCATGGGGCCGTTCTTCGGAGAAGTTACAGTGATGACCTACAAATGGGCAATGCCCTCGTGGACATGTACTCAAAGTGTGGGAGCATAACAAATGCAAAAAATGTGTTCGACAGGATGGGTTGCAAGGACAAGTTTTCATGGACATCGATGATTGCTGGGTATGGAATGAATGGTTATGGAAATGAGGCTGTCCAACTTTTCAGTTCCATGATCCATGCTGGGGTGCATCCTGACCATGTTGTGTTCCTGAGCCTAATAAGTTCTTGCAGCCATGCTGGTTTAGTAGATGAAGGATGGAATTTCTTCAGGTCAATGATAAATGAGTATAATTTGCAGCCTAACAAGGAGGTTTATGGTAGTGTCGTCAATCTCCTTGCTCGTGCTGGTAGTAAATGGGGCGAGTATGCTTTTACAAGGAGGTCTTTGAGAGGCATAGGGAGCAGGAAGGAGGCTGGAATCAGTTGGATAGAGCTTTCACAAGCTAAGAAGGCTGAGTATGGTGCATTTTATTAG
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| Protein seq | MSQKHATTLISSLCSRGAVCHARALFDEMPERDVVAWTAMLSGYASNGLRREALDVFRRMVAAGAAPNEYTLSSVLTACRGPCAPAMAMPLHAVAVRRGVDRMPYVVNALIDSYASLAEGVVDARRLFDALGSGRTAASWTSMIAGYARWGQERTGLRLFKTMLKDGVELSTFACSIALHACTLVIDLCLGQQLHLQCIKKALDVNLAVVNSLIDMYCTCARILDARSLFDGTPERNLITWNTMIAGYSQCDPLMALQLLLEMNDEPNCFTLTSITSACADLAALRCGKQVHGAVLRRSYSDDLQMGNALVDMYSKCGSITNAKNVFDRMGCKDKFSWTSMIAGYGMNGYGNEAVQLFSSMIHAGVHPDHVVFLSLISSCSHAGLVDEGWNFFRSMINEYNLQPNKEVYGSVVNLLARAGSKWGEYAFTRRSLRGIGSRKEAGISWIELSQAKKAEYGAFY
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.080218 | 0.089329 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0299150 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0299150 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0013680 | RBH | 0.217987 | 0.0 | 0.363859 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0013450 | RBH | 0.000000 | 0.616984 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0013700 | RBH | 0.241621 | 0.0 | 0.379860 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0013160 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0013280 | RBH | 0.887696 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0182400 | RBH | 0.509397 | 0.571504 | 0.991019 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0013210 | RBH | 0.0 | 0.0 | 0.109601 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0180700 | RBH | 0.3819815 | 1.515709 | 4.630491 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0013200 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0013300 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0013260 | RBH | 0.0 | 2.993978 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0013360 | RBH | 0.0 | 0.000000 | 0.273570 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0013060 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G013360 | RBH | 0.0 | 0.528476 | 0.210141 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0013130 | RBH | 0.563828 | 4.059862 | 0.000000 |
