Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g18950 | OGI:01032490 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:10713139-10714271 | ||||||||
| Gene Symbol | prx9 | ||||||||||
| DNA seq | TTAGTTGATGGCGCGGCACGTCTTCCTGATCTGGCCGACGCTCCCCGCCGGCATGGCCAGCTTGCTGAGCTTGACGAGCGCCTGCGCGAAGTCGATGTTCCACAGCGTGCCGTTCTCGGCGTACTCGTTGACGTGCTGGAGCGTGGAGTTGGTTCCGACGAGCGCCCAGTCGGAGTGGAACAGCACCAGGTTGTTCTTGTTGTTCTTGTAGTAGCTGTTGTCCAGGTAGTCGCCGCCGACGGCCGGGACGACGTAGCTCGCCAGGTCCCCCAGCGTCGCCGCGTCGATGTCGCGGATGTTGTTCGCCAGCGTCGGGTTCGCCGCGGCGGAGGACGACTTGCAGGTCTTGTTCAGGACGTTGTCGCGGTAGTCGGCGTTGATCTCGGAGTCCGGCGCGGTGAGGCGGTCGTCGAAGTTGGAGGAGTGCGCCTTGCCGATGGAGTGCGCGCCGGAGAGGATGACCAGCTCCTCCGGGGTGAACCCCTTTTTCGCGAAGTTGGAGATCAGCGTGGCGACGCCGGTCTTGGAGTCGGGGAGGGTATTCGTGGCGTCCGCGGCCGAGGAGACGACGCCGTCGAGGCGGCCGGCTGGCACGTCGAAGCTGACGCCGCCGTTGCTCATGTACCTCGACGCGTCGCGGCCCGCGAACACGACATGTCGGCGCAGGAGACGACGCCGGGGCACGCGGTCTCGAGCTTGGCCTTGATCGCGTCGATCACGTCGAGCCCCGCGATGCCGATGTTCGCGCCGGACATCTTCTCCGGTGAAGGATTTGCGGTCGAATTATCAAGAAGGATCGATCCATCACAGCCCTAATGTCCAAAAGAATAGTAATCAGACAATTGATAAATAATACGAACGATTGTATTATGCATGGTTGCGTGAGCATTAGTTGTGTTTACCCTGACGAAGCAGTCATGGAACAACAAGCGTACGAGGGCGGCGCCCTTGGATCTATCAGCATCGAGGAAGTCCTTCACGGTATTGTACACGATGGACTCGACGTTGACGTTGTTGCACTTGCCATTGTAGTAACCCACCGTCAACCCGCCCGGCGCCGCCGACGGCACCACGACCGCGGCGACTAGCCGGAAGGCCACCGCCAGCATGCACACTACCACGAAAACCTTCAT
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| CDS seq | ATGAAGGTTTTCGTGGTAGTGTGCATGCTGGCGGTGGCCTTCCGGCTAGTCGCCGCGGTCGTGGTGCCGTCGGCGGCGCCGGGCGGGTTGACGGTGGGTTACTACAATGGCAAGTGCAACAACGTCAACGTCGAGTCCATCGTGTACAATACCGTGAAGGACTTCCTCGATGCTGATAGATCCAAGGGCGCCGCCCTCGTACGCTTGTTGTTCCATGACTGCTTCGTCAGGGGCTGTGATGGATCGATCCTTCTTGATAATTCGACCGCAAATCCTTCACCGGAGAAGATGTCCGGCGCGAACATCGGCATCGCGGGGCTCGACGTGATCGACGCGATCAAGGCCAAGCTCGAGACCGCGTGCCCCGGCGTCGTCTCCTGCGCCGACATGTCGTGTTCGCGGGCCGCGACGCGTCGAGCCGGCCGCCTCGACGGCGTCGTCTCCTCGGCCGCGGACGCCACGAATACCCTCCCCGACTCCAAGACCGGCGTCGCCACGCTGATCTCCAACTTCGCGAAAAAGGGGTTCACCCCGGAGGAGCTGGTCATCCTCTCCGGCGCGCACTCCATCGGCAAGGCGCACTCCTCCAACTTCGACGACCGCCTCACCGCGCCGGACTCCGAGATCAACGCCGACTACCGCGACAACGTCCTGAACAAGACCTGCAAGTCGTCCTCCGCCGCGGCGAACCCGACGCTGGCGAACAACATCCGCGACATCGACGCGGCGACGCTGGGGGACCTGGCGAGCTACGTCGTCCCGGCCGTCGGCGGCGACTACCTGGACAACAGCTACTACAAGAACAACAAGAACAACCTGGTGCTGTTCCACTCCGACTGGGCGCTCGTCGGAACCAACTCCACGCTCCAGCACGTCAACGAGTACGCCGAGAACGGCACGCTGTGGAACATCGACTTCGCGCAGGCGCTCGTCAAGCTCAGCAAGCTGGCCATGCCGGCGGGGAGCGTCGGCCAGATCAGGAAGACGTGCCGCGCCATCAACTAA
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| Protein seq | MKVFVVVCMLAVAFRLVAAVVVPSAAPGGLTVGYYNGKCNNVNVESIVYNTVKDFLDADRSKGAALVRLLFHDCFVRGCDGSILLDNSTANPSPEKMSGANIGIAGLDVIDAIKAKLETACPGVVSCADMSCSRAATRRAGRLDGVVSSAADATNTLPDSKTGVATLISNFAKKGFTPEELVILSGAHSIGKAHSSNFDDRLTAPDSEINADYRDNVLNKTCKSSSAAANPTLANNIRDIDAATLGDLASYVVPAVGGDYLDNSYYKNNKNNLVLFHSDWALVGTNSTLQHVNEYAENGTLWNIDFAQALVKLSKLAMPAGSVGQIRKTCRAIN |
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| Function | Peroxidase 2 [UniProtKB/Swiss-Prot:Q9FEQ8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g18950 | LOC_Os01g18950.1 | Chr01 | 10713139 | 10714271 | - | MSU_osa1r7 | ||
| CDS seq | ATGAAGGTTTTCGTGGTAGTGTGCATGCTGGCGGTGGCCTTCCGGCTAGTCGCCGCGGTCGTGGTGCCGTCGGCGGCGCCGGGCGGGTTGACGGTGGGTTACTACAATGGCAAGTGCAACAACGTCAACGTCGAGTCCATCGTGTACAATACCGTGAAGGACTTCCTCGATGCTGATAGATCCAAGGGCGCCGCCCTCGTACGCTTGTTGTTCCATGACTGCTTCGTCAGGGGCTGTGATGGATCGATCCTTCTTGATAATTCGACCGCAAATCCTTCACCGGAGAAGATGTCCGGCGCGAACATCGGCATCGCGGGGCTCGACGTGATCGACGCGATCAAGGCCAAGCTCGAGACCGCGTGCCCCGGCGTCGTCTCCTGCGCCGACATGTCGTGTTCGCGGGCCGCGACGCGTCGAGCCGGCCGCCTCGACGGCGTCGTCTCCTCGGCCGCGGACGCCACGAATACCCTCCCCGACTCCAAGACCGGCGTCGCCACGCTGATCTCCAACTTCGCGAAAAAGGGGTTCACCCCGGAGGAGCTGGTCATCCTCTCCGGCGCGCACTCCATCGGCAAGGCGCACTCCTCCAACTTCGACGACCGCCTCACCGCGCCGGACTCCGAGATCAACGCCGACTACCGCGACAACGTCCTGAACAAGACCTGCAAGTCGTCCTCCGCCGCGGCGAACCCGACGCTGGCGAACAACATCCGCGACATCGACGCGGCGACGCTGGGGGACCTGGCGAGCTACGTCGTCCCGGCCGTCGGCGGCGACTACCTGGACAACAGCTACTACAAGAACAACAAGAACAACCTGGTGCTGTTCCACTCCGACTGGGCGCTCGTCGGAACCAACTCCACGCTCCAGCACGTCAACGAGTACGCCGAGAACGGCACGCTGTGGAACATCGACTTCGCGCAGGCGCTCGTCAAGCTCAGCAAGCTGGCCATGCCGGCGGGGAGCGTCGGCCAGATCAGGAAGACGTGCCGCGCCATCAACTAA
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| Protein seq | MKVFVVVCMLAVAFRLVAAVVVPSAAPGGLTVGYYNGKCNNVNVESIVYNTVKDFLDADRSKGAALVRLLFHDCFVRGCDGSILLDNSTANPSPEKMSGANIGIAGLDVIDAIKAKLETACPGVVSCADMSCSRAATRRAGRLDGVVSSAADATNTLPDSKTGVATLISNFAKKGFTPEELVILSGAHSIGKAHSSNFDDRLTAPDSEINADYRDNVLNKTCKSSSAAANPTLANNIRDIDAATLGDLASYVVPAVGGDYLDNSYYKNNKNNLVLFHSDWALVGTNSTLQHVNEYAENGTLWNIDFAQALVKLSKLAMPAGSVGQIRKTCRAIN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0294500 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g04440 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0294500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0013380 | RBH | 0.0 | 6.954937 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0013140 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0013410 | RBH | 0.0 | 10.991210 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0012900 | RBH | 0.090155 | 2.844615 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0013010 | RBH | 0.0 | 68.587982 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0177600 | RBH | 0.0064405 | 0.4665475 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0012950 | RBH | 0.0 | 10.890982 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0176900 | RBH | 0 | 0.023896 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0012940 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0013040 | RBH | 0.0 | 1.351814 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0013000 | RBH | 0.0 | 19.825983 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0013100 | RBH | 0.0 | 2.324705 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0012790 | RBH | 0.0 | 65.704483 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G013090 | RBH | 0.0 | 25.380245 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0012850 | RBH | 0.0 | 87.470932 | 0.0 |
