Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g18240 | OGI:01031180 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:10217247-10219696 | ||||||||
| Gene Symbol | OsMYB55/61, OsMYB55, MYB55, OsMYB61, MYB61, OsMYB61a, MYB61a | ||||||||||
| DNA seq | TGTATTCAAGTGGGACGTGATCAGCTAGCTCCAGATTCTCCTTAGCAAAAGGTGAAGAAAGAAAAGAAAAGGTGAAGGAAAAGAAAAGTACCACTAAGTCAATATGCCAAAGGTCTTCCCTCATCAATACATAAGCTATTTCGTCTGGAACTTGTGGAAAGAAAGAAGGGGAGAATAAAAGTGCAACATGGAACAGATTTGCATCGCTGTGCATGGTTACAGTTGAAATTTTTGGTACCATTTATATGGTTTCTAAGTACTGCCGACACATGTGGTTTTCCCATGCCTCTTTGTATTTATTGATAAGAAAGGAGCATGCGGAAACTCAAGAATACAAAAAAGTCGATCTACTTGCTTGTATAAATGAAGACAATAATTTTTTCAAAGGAAACAAGGTAAACTCCGGAACATTTCTATACATTTTTCTGCAACTTAAACCCAACTCGTCTCTTTTTTCCCACTGCACTACATTTTCTTTCAACTGAAGAATTGCTCTTTGATGTTCATTCATGTCTTACCAAAAGAATGCATCTATGTGAACACTCACAATAATTTATCCACAAACAACTGAGTACACTGTAAACGTATCTCTGAAGAAACATTGTGCTTCCTAAGCTTTCAACTCTCAATTTTCATGTGGTGCTCTGTTCCCTGCATGCTGGAACATGGTTCCTAGATATTCTCAAAAGACAAGGACATCCTTTGCAAATCCTTGTCATACATATCTGATACTACTGGAAGATGTTGCTGTGGCAGCAGGTTTTGAGACCAAGCTGCACAGAGCCCCTCCATGTTGAATTGGCTCTCTGCTTTGACAACGTCTTCATACAGTGACTGGCTAAGGTTCTGCATGGGCGCTGGCATCTCTGAGAACGTTCCATGGAGCAAGTCAGGCCACTTGAGTTCTTCCTCTAGTTGTGCTTGGCTATCCTTTTCTGGTGCTAAATCTGACCATGGGAATATGTTGGTCTCCAAAAGGGAGCTTGTGCTTTGCAGCTCGAATCCCAACCCGTTGTTACCACTACTCCCTGTACTGCTACTGCTGCTAGGATTGTTGGTGTCCCAATAGAATTGGGAATTGTGGATGCCAGTGCCTCGAGAGTTTGCATTGTCTGGTGATGGATTAAGGCCTGTTGATGTCGAGAGAGTTGATGGTGAAACTGGGGGCATCACAGTGGAAATTGTGCTGCTACTGGACTCATTCTGGTTATACCAGAGTGAATTCCTGTTTCCAACGTCCATGCTGTTAAAATCATTATTGTAGCACAACAGCTGCTGGAACGGGAAATTGGGAATTGGGCCAGATGAACGGCAGCTAGGGAGGTTCTCATGGCCAGAAGTAAGCTGGTCTAGAAATAGTTCCTTCGGTGGCACCTTCAGACGTGCCAAGCCCGGAGCTTGTGTGCGAGGTTTAGTTACCTTCACTGGCAGCAGCTCTGATGATTGCGCCGTCTCGCTCAGAAGATGGCTCAAGTTGTGAAGAGCAACGCCACTAGATGGGTCAACATCGCTGGATTCAGAGGTCCTGTCATTGCTGATGGTGGGAGTTGCTTTGCTTCGATCAACCTCGGCAAGGGGCTTGTGGGTGTTTGGGTCAATGCCTTTCTGCCGCAGCTTCTTCTTGATGCATGAATTCCAGAGATTCTTGATCTCATTGTCAGTTCTTCCAGGCAGCCGTGTTGCAATTTGAGACCACCTGCTCATTGATGTGAAAAAAAAGGCCATAATTAGAGGAGGCTCGATTTGATGAGGTAATTAAATCCTAAACTCTAGCAGTGCAATTGAGTTCAAATTTACCTGTTTCCCAGAACAGCATGGAGCTCAACGATGAGGTCCTCTTCCTCCTGAGAGAATGCACCTCTCTTTAGGTCAGGCCTCAAGTAGTTTATCCATCTCAGCCTGCAGCTTTTGCCACATCTCTGAAGCCCTGCAACAATTCGTTTGATTGCTAAGATTTCAGGGGAGACTTGAATTGACTGAGAAGAAAGAACACAAAGTGGATAATCGACAAGAATAAAGTGCAGAATATTTTGATGCTCACCTGCAAGTTTTGGAACGGTGCTCCAGCAGCCATGGCCATGCTTGGTTATGTGGTTCATGAGCTTCTCATCCTCCTCAGGTGACCAGAGCCCCTTCCTCAGCTTCTGCTTGTAGCAGCAGGAATGTCTCCCCATTGAATCAATGCAGAAACTGAAGCTATGCAATCTGCACAGCTTGCCCTCCCAAGAAACTTCCACAGCACACAACACCTACACAGGTAATCCTCTTGGTGATTCAGTGCTCAAGAGTGGGATTGCTGCGAGTGTACAGTCTATAGTGGCTCATATATTGGTGCTTGATAGGATGGAAGCTTATGGCAGAGTGGCAGCAACAAGTGGCTCAAGATATCAGGATTTTGGAGGAAGGCATAGGTAGGTTAGAGGGCACTCTTCTCCTTTTCTTTGCAGGCC
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| CDS seq | ATGGGGAGACATTCCTGCTGCTACAAGCAGAAGCTGAGGAAGGGGCTCTGGTCACCTGAGGAGGATGAGAAGCTCATGAACCACATAACCAAGCATGGCCATGGCTGCTGGAGCACCGTTCCAAAACTTGCAGGGCTTCAGAGATGTGGCAAAAGCTGCAGGCTGAGATGGATAAACTACTTGAGGCCTGACCTAAAGAGAGGTGCATTCTCTCAGGAGGAAGAGGACCTCATCGTTGAGCTCCATGCTGTTCTGGGAAACAGGTGGTCTCAAATTGCAACACGGCTGCCTGGAAGAACTGACAATGAGATCAAGAATCTCTGGAATTCATGCATCAAGAAGAAGCTGCGGCAGAAAGGCATTGACCCAAACACCCACAAGCCCCTTGCCGAGGTTGATCGAAGCAAAGCAACTCCCACCATCAGCAATGACAGGACCTCTGAATCCAGCGATGTTGACCCATCTAGTGGCGTTGCTCTTCACAACTTGAGCCATCTTCTGAGCGAGACGGCGCAATCATCAGAGCTGCTGCCAGTGAAGGTAACTAAACCTCGCACACAAGCTCCGGGCTTGGCACGTCTGAAGGTGCCACCGAAGGAACTATTTCTAGACCAGCTTACTTCTGGCCATGAGAACCTCCCTAGCTGCCGTTCATCTGGCCCAATTCCCAATTTCCCGTTCCAGCAGCTGTTGTGCTACAATAATGATTTTAACAGCATGGACGTTGGAAACAGGAATTCACTCTGGTATAACCAGAATGAGTCCAGTAGCAGCACAATTTCCACTGTGATGCCCCCAGTTTCACCATCAACTCTCTCGACATCAACAGGCCTTAATCCATCACCAGACAATGCAAACTCTCGAGGCACTGGCATCCACAATTCCCAATTCTATTGGGACACCAACAATCCTAGCAGCAGTAGCAGTACAGGGAGTAGTGGTAACAACGGGTTGGGATTCGAGCTGCAAAGCACAAGCTCCCTTTTGGAGACCAACATATTCCCATGGTCAGATTTAGCACCAGAAAAGGATAGCCAAGCACAACTAGAGGAAGAACTCAAGTGGCCTGACTTGCTCCATGGAACGTTCTCAGAGATGCCAGCGCCCATGCAGAACCTTAGCCAGTCACTGTATGAAGACGTTGTCAAAGCAGAGAGCCAATTCAACATGGAGGGGCTCTGTGCAGCTTGGTCTCAAAACCTGCTGCCACAGCAACATCTTCCAGTAGTATCAGATATGTATGACAAGGATTTGCAAAGGATGTCCTTGTCTTTTGAGAATATCTAG
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| Protein seq | MGRHSCCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSTVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQEEEDLIVELHAVLGNRWSQIATRLPGRTDNEIKNLWNSCIKKKLRQKGIDPNTHKPLAEVDRSKATPTISNDRTSESSDVDPSSGVALHNLSHLLSETAQSSELLPVKVTKPRTQAPGLARLKVPPKELFLDQLTSGHENLPSCRSSGPIPNFPFQQLLCYNNDFNSMDVGNRNSLWYNQNESSSSTISTVMPPVSPSTLSTSTGLNPSPDNANSRGTGIHNSQFYWDTNNPSSSSSTGSSGNNGLGFELQSTSSLLETNIFPWSDLAPEKDSQAQLEEELKWPDLLHGTFSEMPAPMQNLSQSLYEDVVKAESQFNMEGLCAAWSQNLLPQQHLPVVSDMYDKDLQRMSLSFENI |
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| Function | Transcription factor MYB61 [UniProtKB/Swiss-Prot:Q8VZQ2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g18240 | LOC_Os01g18240.1 | Chr01 | 10217247 | 10219696 | - | MSU_osa1r7 | ||
| CDS seq | ATGGGGAGACATTCCTGCTGCTACAAGCAGAAGCTGAGGAAGGGGCTCTGGTCACCTGAGGAGGATGAGAAGCTCATGAACCACATAACCAAGCATGGCCATGGCTGCTGGAGCACCGTTCCAAAACTTGCAGGGCTTCAGAGATGTGGCAAAAGCTGCAGGCTGAGATGGATAAACTACTTGAGGCCTGACCTAAAGAGAGGTGCATTCTCTCAGGAGGAAGAGGACCTCATCGTTGAGCTCCATGCTGTTCTGGGAAACAGGTGGTCTCAAATTGCAACACGGCTGCCTGGAAGAACTGACAATGAGATCAAGAATCTCTGGAATTCATGCATCAAGAAGAAGCTGCGGCAGAAAGGCATTGACCCAAACACCCACAAGCCCCTTGCCGAGGTTGATCGAAGCAAAGCAACTCCCACCATCAGCAATGACAGGACCTCTGAATCCAGCGATGTTGACCCATCTAGTGGCGTTGCTCTTCACAACTTGAGCCATCTTCTGAGCGAGACGGCGCAATCATCAGAGCTGCTGCCAGTGAAGGTAACTAAACCTCGCACACAAGCTCCGGGCTTGGCACGTCTGAAGGTGCCACCGAAGGAACTATTTCTAGACCAGCTTACTTCTGGCCATGAGAACCTCCCTAGCTGCCGTTCATCTGGCCCAATTCCCAATTTCCCGTTCCAGCAGCTGTTGTGCTACAATAATGATTTTAACAGCATGGACGTTGGAAACAGGAATTCACTCTGGTATAACCAGAATGAGTCCAGTAGCAGCACAATTTCCACTGTGATGCCCCCAGTTTCACCATCAACTCTCTCGACATCAACAGGCCTTAATCCATCACCAGACAATGCAAACTCTCGAGGCACTGGCATCCACAATTCCCAATTCTATTGGGACACCAACAATCCTAGCAGCAGTAGCAGTACAGGGAGTAGTGGTAACAACGGGTTGGGATTCGAGCTGCAAAGCACAAGCTCCCTTTTGGAGACCAACATATTCCCATGGTCAGATTTAGCACCAGAAAAGGATAGCCAAGCACAACTAGAGGAAGAACTCAAGTGGCCTGACTTGCTCCATGGAACGTTCTCAGAGATGCCAGCGCCCATGCAGAACCTTAGCCAGTCACTGTATGAAGACGTTGTCAAAGCAGAGAGCCAATTCAACATGGAGGGGCTCTGTGCAGCTTGGTCTCAAAACCTGCTGCCACAGCAACATCTTCCAGTAGTATCAGATATGTATGACAAGGATTTGCAAAGGATGTCCTTGTCTTTTGAGAATATCTAG
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| Protein seq | MGRHSCCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSTVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQEEEDLIVELHAVLGNRWSQIATRLPGRTDNEIKNLWNSCIKKKLRQKGIDPNTHKPLAEVDRSKATPTISNDRTSESSDVDPSSGVALHNLSHLLSETAQSSELLPVKVTKPRTQAPGLARLKVPPKELFLDQLTSGHENLPSCRSSGPIPNFPFQQLLCYNNDFNSMDVGNRNSLWYNQNESSSSTISTVMPPVSPSTLSTSTGLNPSPDNANSRGTGIHNSQFYWDTNNPSSSSSTGSSGNNGLGFELQSTSSLLETNIFPWSDLAPEKDSQAQLEEELKWPDLLHGTFSEMPAPMQNLSQSLYEDVVKAESQFNMEGLCAAWSQNLLPQQHLPVVSDMYDKDLQRMSLSFENI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.752023 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0285300 | RBH | 0.0 | 0.0 | 3.076899 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g04820 | RBH | 0.132790 | 0.090294 | 0.595493 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0285300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0012990 | RBH | 0.085000 | 6.729747 | 7.742373 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0012690 | RBH | 0.0 | 4.001675 | 0.571324 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0013020 | RBH | 0.183986 | 46.906303 | 6.648963 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0012480 | RBH | 0.0 | 1.552585 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0012590 | RBH | 0.448132 | 33.499550 | 13.200973 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0171800 | RBH | 14.0149675 | 4.5821805 | 1.376729 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0012520 | RBH | 0.0 | 3.657383 | 0.721948 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0169600 | RBH | 10.479227 | 0.125634 | 0.3629375 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0012520 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0012600 | RBH | 0.0 | 11.981247 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0012550 | RBH | 0.0 | 36.762634 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0012680 | RBH | 0.164767 | 1.473923 | 1.381339 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0012420 | RBH | 0.197062 | 26.411673 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G012670 | RBH | 0.000000 | 11.650044 | 3.266804 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0012480 | RBH | 0.0 | 14.151045 | 6.352080 |
