Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g13460 | OGI:01023500 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:7495057-7498391 | ||||||||
| Gene Symbol | OsbHLH008, bHLH008, OsMYL2, MYL2, DLN6, OsDLN6, OsMYC1, MYC1 | ||||||||||
| DNA seq | CCCCGAGTAACATGCCGAAGTATAAACACCAACTCACTTGAGATACAAACAAAAACACAGAATTAGCAGAAAAGCAGGTGACTTCTTTCCCAACTCATGCATTTGACGAGATGTACTGTTTATGGTTCTGCCACAAGCAATAAACTAAGAACATGGTATTCTCCCCAATAAACAACAAAAAGAGAAAAACTACACCGACCACAAAAGCCTACCATACAACAATGGCAGTTTTAACTTGAGAGCTTTGTCTTCCCCTTGGATCGCTAAGTCAGAATCTGAGCTTTCTTTCTCTGCCTACAAACTTCTTCTATCAACAGCGCTGAAAGGTGGGTGGATGGGTGTCCGTCCAACCGACTGCTTGCTGCTTGTCTGCAACCAGCGAACGAAGTAAAGCTGCCTCTACCGGTGGCGCCCACTCCCCAACTGATTCTACCCTGAGTTCATCACGCGAGACATGGCGGCAATCACCTTCTCCCTCGTTTGCTGTTCGGCGCCAGGGCACTTGATGATGAAAGAATGCACGGCCGTGCCGTTGTTGCTTGTGATCTTCGACTCCCCTGCATGGACTTCTGCCTCTTCGAAAGCTTGGAAGATGGCCCTGACAGGGTGGCTTTCCATGGGGCTCATCACTCGGACTAGAACCTCATCCTGAACCACCTGAATGTCCACCTCAGGTCGAGGCGTCCGATCCCTCGGATCGATCATTCCAGACTCGATAAGCCTTTCTCGCTCTACCTCCATCTCTTTGAGCTTCTTCTGTAGGTCAGTGATGTATGTTATGGCGTCACCAAGGAGGGATGCCTTGTCCATTTTTGATATATTGGGTACAACGGCTCTCAGTGCATAGAATCGCTGGTTGAGCTTCTCCCTCCTCTGGCGCTCGGCCTCAACATGATTTAGTGGCTCTTCCCTCCCGTTTGCAGGCTTTCTTCCCCTCTTTCTAGGCCGCCGGTCTTCTAATGCAGGTGGCGGACCTTCGTCTTTACACAAGCCATCCACCTCTGCACCATCCCCATCAATACCAGCTGGTTTTTTAGTCAAAACACCAGGTTTGGAACTGGTCCCAGCACTGAAATCTATTTGCCTGGGAGCTTGAGGCTGCAACTGTTGCTGACTCACTAGTTGCTGTGGCTTTACTAGCTGATGTGATTTCTGGAGCTGTGGTAGTTTCTGAAGTGGTGGTGCTTTCTGAAGCTGAAACTGTGTTGCAGTAGAGCTGTCAACTCCTCCATTGTTGCGCGGTGTGGCTTCATTGCTCACAATCAATATACCGTTGCCAAACTTCTGCTGATGAGAATTCAGGCCCCGAGCCTGACTCCAAGTGAAATTCTGCAAACCTCTTTGGACATTGGGGAGCAATGAGCTCCCACCACCAGTCCTTTGTTCCCACGACCTTTCATCTGCCTCTGACACGCCAGTTCCTGGGCCTGCTGAAGGCCGGCCAAGGTTAAGGTCCTTCCCAAAAATCTTTGCCAAACCTGGTGACTTATCTGTAGGGCCACTCCCCTCGTGTCTCTGAACTCCAGCTTTATTGCCAATTGCCCCAGCAAACACAGATCTTATGGTCTGGAGAGTGTCAGAACTCTCCGCTACCTGTTGCATCGAACCCAGTTCAAGTACACCGGTCTCAAATGGAACTAGCACAATAGTTCTAAATCCTGCAGCATTTGCAAGGTATCCCCGGTAACAGTAATTGGCAGGAAATACGTTACGTTCAGTGTTGGGAATCCACAGGGGCACGCCTGCTGCAAATACTTGACCAGGGCCACCAGCACGGCGTGGAAATGCAAAGTACATAGATGCTAGAAAAAACATCTCTGTGTCTGTCACCTGATCAATGCCTGGGGCATAATCCTCCTCGTCAACACCTCCGAATGCTGAGTGCAATCGCTGCAGCACACGCTTGCGCATCCTCTGTTTGGCCTCGTCACTACCTGCAGAAGCAGCAGGTCCCATCTCACCATCATGAGGCTCACGGCAAGAGCCATCCCCCCATCCAAGGACAAGGTCACCGGACTTTGTGCGCGACAGCTGCCAGAATATGGCATAGTTCCAACCAGCACCAGGACGATCTGATTCGACAAGCTCCTGGAGTCTATTTTGCAAGTCCACTGGCAAAGATGCAGCAACAAGGCCCTCGGATATGGCACCACCTCCTTTTGTCAAGTAAGCAAAAGCATCCGTTCCAAGCACACTGGCGGTGAGCGCTCGGTCCTCGTCAGTCCATGTCCCACCAGTTCCGCCATTGGCACCATCCTCATCAGCCTCCATCTTCATCACCATAATACCTACTCAAGATAGTATATATATCAGGCCAAATATAGCACTAAAAATGCGTAATACTCACAAGAATTGACTGGCTGGACGCCACAAGCACAGTTTTAGACAAATACACAAGCAACAAAATATCATTTGGACTTATGAATAATCGGGTGCTGAACTCAGAATAACAGGAACAAAACTCTCAGTTATCATCCAGCTAAAAACACACTGTGATGAGTGATAAAAAAAATTCACTGCTCTTACGTCAGTACAGATTATATTCGCGGACACATAATCGCTAAATAACCCACTCAAATAACAGAAATCGTCCACAAAGTGTGCAACCAGAATTTATAACTAATCCTGACATTTCATATGGCACCATTTCAACGGATAAAAGACATGGAGGGAAAACACGATTGAATTCTATCCAAACCTGACCCAGCAAAAAGTGATACAACCAGTAATTTTCCTATCTTTTTCACGCTATAGGATACAGCCAAAACACCCGTGCCGATCGCGGCCAATCAGATTCCACCCTAAGCAAACCCTCCTCCCGCCTCAACCCGCCCAGCTCGTCAAACCCCAACCATCCCAAACCCCCATCCATTCCACTGTTTCCGCAACAGCGAGCAGCCACATCATCAACAACAACAACAACAACAAACTAGTACAGTATAGATACGGCAATTCTCACAGTGCAGCAAGGCAGCGGGGGAAAATCTCACCGTGCTGGGGCTCCCGCGCCCGAATCGGCGCCGCGGCCACGGAATCCAGGACGGGCGGGGTCTCCTCCGCGCCCCCCCAAGAAGAAAGAGGCGGGCCCCCCCACCCGCCGCTGGCTGAATCCGAGCACCCTCCCCCCCCCCCGGCGACGGCGACGCCCGGATCTCCCCCCACCCACACCCCACGCGAGCGCGAGGGTCCCCCGAATTCGCCGCGCGCGCAGGAGGCGGAGGCGGAGGCGGAGGCGGTGGTGGTGATGGTGGTGCCTCAGGTTTCTCTGGTTCGCGAGGGGATTTCGGGGGCGGAGGAGGAAGGCGACTTGTGATGTGGAGAGAGAGAAGAAGAGG
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| CDS seq | ATGGTGATGAAGATGGAGGCTGATGAGGATGGTGCCAATGGCGGAACTGGTGGGACATGGACTGACGAGGACCGAGCGCTCACCGCCAGTGTGCTTGGAACGGATGCTTTTGCTTACTTGACAAAAGGAGGTGGTGCCATATCCGAGGGCCTTGTTGCTGCATCTTTGCCAGTGGACTTGCAAAATAGACTCCAGGAGCTTGTCGAATCAGATCGTCCTGGTGCTGGTTGGAACTATGCCATATTCTGGCAGCTGTCGCGCACAAAGTCCGGTGACCTTGTCCTTGGATGGGGGGATGGCTCTTGCCGTGAGCCTCATGATGGTGAGATGGGACCTGCTGCTTCTGCAGGTAGTGACGAGGCCAAACAGAGGATGCGCAAGCGTGTGCTGCAGCGATTGCACTCAGCATTCGGAGGTGTTGACGAGGAGGATTATGCCCCAGGCATTGATCAGGTGACAGACACAGAGATGTTTTTTCTAGCATCTATGTACTTTGCATTTCCACGCCGTGCTGGTGGCCCTGGTCAAGTATTTGCAGCAGGCGTGCCCCTGTGGATTCCCAACACTGAACGTAACGTATTTCCTGCCAATTACTGTTACCGGGGATACCTTGCAAATGCTGCAGGATTTAGAACTATTGTGCTAGTTCCATTTGAGACCGGTGTACTTGAACTGGGTTCGATGCAACAGGTAGCGGAGAGTTCTGACACTCTCCAGACCATAAGATCTGTGTTTGCTGGGGCAATTGGCAATAAAGCTGGAGTTCAGAGACACGAGGGGAGTGGCCCTACAGATAAGTCACCAGGTTTGGCAAAGATTTTTGGGAAGGACCTTAACCTTGGCCGGCCTTCAGCAGGCCCAGGAACTGGCGTGTCAGAGGCAGATGAAAGGTCGTGGGAACAAAGGACTGGTGGTGGGAGCTCATTGCTCCCCAATGTCCAAAGAGGTTTGCAGAATTTCACTTGGAGTCAGGCTCGGGGCCTGAATTCTCATCAGCAGAAGTTTGGCAACGGTATATTGATTGTGAGCAATGAAGCCACACCGCGCAACAATGGAGGAGTTGACAGCTCTACTGCAACACAGTTTCAGCTTCAGAAAGCACCACCACTTCAGAAACTACCACAGCTCCAGAAATCACATCAGCTAGTAAAGCCACAGCAACTAGTGAGTCAGCAACAGTTGCAGCCTCAAGCTCCCAGGCAAATAGATTTCAGTGCTGGGACCAGTTCCAAACCTGGTGTTTTGACTAAAAAACCAGCTGGTATTGATGGGGATGGTGCAGAGGTGGATGGCTTGTGTAAAGACGAAGGTCCGCCACCTGCATTAGAAGACCGGCGGCCTAGAAAGAGGGGAAGAAAGCCTGCAAACGGGAGGGAAGAGCCACTAAATCATGTTGAGGCCGAGCGCCAGAGGAGGGAGAAGCTCAACCAGCGATTCTATGCACTGAGAGCCGTTGTACCCAATATATCAAAAATGGACAAGGCATCCCTCCTTGGTGACGCCATAACATACATCACTGACCTACAGAAGAAGCTCAAAGAGATGGAGGTAGAGCGAGAAAGGCTTATCGAGTCTGGAATGATCGATCCGAGGGATCGGACGCCTCGACCTGAGGTGGACATTCAGGTGGTTCAGGATGAGGTTCTAGTCCGAGTGATGAGCCCCATGGAAAGCCACCCTGTCAGGGCCATCTTCCAAGCTTTCGAAGAGGCAGAAGTCCATGCAGGGGAGTCGAAGATCACAAGCAACAACGGCACGGCCGTGCATTCTTTCATCATCAAGTGCCCTGGCGCCGAACAGCAAACGAGGGAGAAGGTGATTGCCGCCATGTCTCGCGTGATGAACTCAGGGTAG
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| Protein seq | MVMKMEADEDGANGGTGGTWTDEDRALTASVLGTDAFAYLTKGGGAISEGLVAASLPVDLQNRLQELVESDRPGAGWNYAIFWQLSRTKSGDLVLGWGDGSCREPHDGEMGPAASAGSDEAKQRMRKRVLQRLHSAFGGVDEEDYAPGIDQVTDTEMFFLASMYFAFPRRAGGPGQVFAAGVPLWIPNTERNVFPANYCYRGYLANAAGFRTIVLVPFETGVLELGSMQQVAESSDTLQTIRSVFAGAIGNKAGVQRHEGSGPTDKSPGLAKIFGKDLNLGRPSAGPGTGVSEADERSWEQRTGGGSSLLPNVQRGLQNFTWSQARGLNSHQQKFGNGILIVSNEATPRNNGGVDSSTATQFQLQKAPPLQKLPQLQKSHQLVKPQQLVSQQQLQPQAPRQIDFSAGTSSKPGVLTKKPAGIDGDGAEVDGLCKDEGPPPALEDRRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITYITDLQKKLKEMEVERERLIESGMIDPRDRTPRPEVDIQVVQDEVLVRVMSPMESHPVRAIFQAFEEAEVHAGESKITSNNGTAVHSFIIKCPGAEQQTREKVIAAMSRVMNSG |
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| Function | Transcription factor MTB1 [UniProtKB/Swiss-Prot:A0A3Q7ELQ2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g13460 | LOC_Os01g13460.1 | Chr01 | 7495057 | 7498391 | - | MSU_osa1r7 | ||
| CDS seq | ATGGTGATGAAGATGGAGGCTGATGAGGATGGTGCCAATGGCGGAACTGGTGGGACATGGACTGACGAGGACCGAGCGCTCACCGCCAGTGTGCTTGGAACGGATGCTTTTGCTTACTTGACAAAAGGAGGTGGTGCCATATCCGAGGGCCTTGTTGCTGCATCTTTGCCAGTGGACTTGCAAAATAGACTCCAGGAGCTTGTCGAATCAGATCGTCCTGGTGCTGGTTGGAACTATGCCATATTCTGGCAGCTGTCGCGCACAAAGTCCGGTGACCTTGTCCTTGGATGGGGGGATGGCTCTTGCCGTGAGCCTCATGATGGTGAGATGGGACCTGCTGCTTCTGCAGGTAGTGACGAGGCCAAACAGAGGATGCGCAAGCGTGTGCTGCAGCGATTGCACTCAGCATTCGGAGGTGTTGACGAGGAGGATTATGCCCCAGGCATTGATCAGGTGACAGACACAGAGATGTTTTTTCTAGCATCTATGTACTTTGCATTTCCACGCCGTGCTGGTGGCCCTGGTCAAGTATTTGCAGCAGGCGTGCCCCTGTGGATTCCCAACACTGAACGTAACGTATTTCCTGCCAATTACTGTTACCGGGGATACCTTGCAAATGCTGCAGGATTTAGAACTATTGTGCTAGTTCCATTTGAGACCGGTGTACTTGAACTGGGTTCGATGCAACAGGTAGCGGAGAGTTCTGACACTCTCCAGACCATAAGATCTGTGTTTGCTGGGGCAATTGGCAATAAAGCTGGAGTTCAGAGACACGAGGGGAGTGGCCCTACAGATAAGTCACCAGGTTTGGCAAAGATTTTTGGGAAGGACCTTAACCTTGGCCGGCCTTCAGCAGGCCCAGGAACTGGCGTGTCAGAGGCAGATGAAAGGTCGTGGGAACAAAGGACTGGTGGTGGGAGCTCATTGCTCCCCAATGTCCAAAGAGGTTTGCAGAATTTCACTTGGAGTCAGGCTCGGGGCCTGAATTCTCATCAGCAGAAGTTTGGCAACGGTATATTGATTGTGAGCAATGAAGCCACACCGCGCAACAATGGAGGAGTTGACAGCTCTACTGCAACACAGTTTCAGCTTCAGAAAGCACCACCACTTCAGAAACTACCACAGCTCCAGAAATCACATCAGCTAGTAAAGCCACAGCAACTAGTGAGTCAGCAACAGTTGCAGCCTCAAGCTCCCAGGCAAATAGATTTCAGTGCTGGGACCAGTTCCAAACCTGGTGTTTTGACTAAAAAACCAGCTGGTATTGATGGGGATGGTGCAGAGGTGGATGGCTTGTGTAAAGACGAAGGTCCGCCACCTGCATTAGAAGACCGGCGGCCTAGAAAGAGGGGAAGAAAGCCTGCAAACGGGAGGGAAGAGCCACTAAATCATGTTGAGGCCGAGCGCCAGAGGAGGGAGAAGCTCAACCAGCGATTCTATGCACTGAGAGCCGTTGTACCCAATATATCAAAAATGGACAAGGCATCCCTCCTTGGTGACGCCATAACATACATCACTGACCTACAGAAGAAGCTCAAAGAGATGGAGGTAGAGCGAGAAAGGCTTATCGAGTCTGGAATGATCGATCCGAGGGATCGGACGCCTCGACCTGAGGTGGACATTCAGGTGGTTCAGGATGAGGTTCTAGTCCGAGTGATGAGCCCCATGGAAAGCCACCCTGTCAGGGCCATCTTCCAAGCTTTCGAAGAGGCAGAAGTCCATGCAGGGGAGTCGAAGATCACAAGCAACAACGGCACGGCCGTGCATTCTTTCATCATCAAGTGCCCTGGCGCCGAACAGCAAACGAGGGAGAAGGTGATTGCCGCCATGTCTCGCGTGATGAACTCAGGGTAG
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| Protein seq | MVMKMEADEDGANGGTGGTWTDEDRALTASVLGTDAFAYLTKGGGAISEGLVAASLPVDLQNRLQELVESDRPGAGWNYAIFWQLSRTKSGDLVLGWGDGSCREPHDGEMGPAASAGSDEAKQRMRKRVLQRLHSAFGGVDEEDYAPGIDQVTDTEMFFLASMYFAFPRRAGGPGQVFAAGVPLWIPNTERNVFPANYCYRGYLANAAGFRTIVLVPFETGVLELGSMQQVAESSDTLQTIRSVFAGAIGNKAGVQRHEGSGPTDKSPGLAKIFGKDLNLGRPSAGPGTGVSEADERSWEQRTGGGSSLLPNVQRGLQNFTWSQARGLNSHQQKFGNGILIVSNEATPRNNGGVDSSTATQFQLQKAPPLQKLPQLQKSHQLVKPQQLVSQQQLQPQAPRQIDFSAGTSSKPGVLTKKPAGIDGDGAEVDGLCKDEGPPPALEDRRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAITYITDLQKKLKEMEVERERLIESGMIDPRDRTPRPEVDIQVVQDEVLVRVMSPMESHPVRAIFQAFEEAEVHAGESKITSNNGTAVHSFIIKCPGAEQQTREKVIAAMSRVMNSG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.765919 | 1.953649 | 3.177542 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0235700 | RBH | 2.459223 | 3.028934 | 12.871803 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0235700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0009730 | RBH | 0.640708 | 21.726246 | 13.991434 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0009370 | RBH | 0.999149 | 5.847435 | 8.946501 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0009710 | RBH | 1.433026 | 8.094312 | 25.894753 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0009260 | RBH | 0.340135 | 0.532750 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0009290 | RBH | 6.733744 | 22.707390 | 30.201456 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0122600 | RBH | 9.9925075 | 36.2759325 | 46.9004555 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0009300 | RBH | 0.434970 | 1.252396 | 4.604457 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0122300 | RBH | 14.006579 | 29.155453 | 19.761919 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0008010 | RBH | 0.581362 | 0.430227 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0009330 | RBH | 0.723031 | 23.677588 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0009290 | RBH | 5.203256 | 14.391696 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0009410 | RBH | 1.532252 | 1.795006 | 1.966116 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0009220 | RBH | 0.312255 | 6.261138 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G009360 | RBH | 0.482466 | 3.556854 | 6.353765 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0009250 | RBH | 1.035828 | 18.676895 | 19.784483 |
