Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g12390 | OGI:01021400 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:6766497-6770164 | ||||||||
| Gene Symbol | SRLK, OsSRLK | ||||||||||
| DNA seq | TTGAAGAAGTTAATAATACTATCCAAGAATAATTCAGAGAGCAGGTGCTGTTCTTTGCTTACAGATCAGCAGTGAGCAAATGCTGAATAAGCAAGCTCTGTCCACAAGGCGTTACAATTTTGTAACATGTAATCTCTTACGACAAAAGAATCATCATCATGCAGGCAAGCAGTACTGTCAAAACACAGGATTCATTCCCCTAGTTCCCTACCTGGTAAGACAAACAACATGATAAACTAGGGGGCAGCTTCCAACGAGTGAGGTTCAGTGAGCGGCAGATGAGCTCTCTGCCTTGTTCTGAACATCCACCACCGGAGTGGATGCCTCCGTCGAGGTCCGCGTCCCGGTATCGGTCCTCCGCACATCTTCAAGCATCCTCACCACGTCCGACATCTTAGGCCGCCGTTCTGGGGTCCTTGAGACGCATGCCATGGCGATCTGGAGCATCTCCACCATCTCCTCCTCGATGTTGGGGTACCTCATCAGCTCGACGTCAAACACCTCGGCAGTCCACTCCTCCCGGACAACAGATTGCACCCATCTGACAAGGTGAACAACCTCATTGCCCCCACCAGTGATCTGAACAGGTGATCTCCCGGTCAGGAGCTCAAGTATGAAGACACCAAAGCTGTAGACATCTGAACATTGCGATGCTTTCCTCGAATCTGTGACCTCTGGTGCACAATATCCCAGAGAACGGGACCTTGCGGTGATTGGGTTCATCAGCGATGCCAAGCCGAGGTCGGAGACACAGCCATATTGCTGGTTGTTCAGGAAGACATTTGAGGCCTTGATGTTGCCGTGAACAAATTTCCCATTGTTCTCAGTGTGAATGTGTGCAATCCCTCTTGCTGCTCCCAGGGCTATCCTTACCCTGGTTTCCCAGTTCAAAGGTGTTCTGTCCTCCCCTCTCTTTCCTGCGTGGGGCAAAAAGAGATGGTTACGATCTGAACATCACATTCAATTATGGGTAGAATAAATACAATTGGGTTATCTTGCTAATTTATCCTGATCCATTTCAGATGAAGAAAAACATACCAACATTACTACAGCGGATCACAGAAAAATTCATGTGTTTTTTATTTTGTTGATGAAATATTGTATCTGAATTTAGGAATTCGGTCATTTATCTGCAATAAGATGCCGCATCTAAGGAAATATATTGTAATGCTACCATTCTGGCCTTGACATGACCAGTTGACCATACCAAGCATGCCATGTGAACTTGAATTGAACTGGCTCCACATGCAAGATTGCAAGTGAATACAGCTAAGAGCAATGGTGGAGCCTTATAAAATATAAGCTTACCAATCAGCTCATTCTCAATGAGCATGGCAAGTTTAAGACAGAAATCCAAAACAAGGAATATAAATTTAGAAGGTTCTAATTTCACATGGCTGCATATAGGCACTAGAGATATTAGAACTATATACCACTTAAAGTAAAACATGAACGGGACATCAAAATTGGCCCAATTAGAAAGGTAAAGAAGTCCCGAGTGGCATATTCAGCAAGAGTGAAAGAGGATAATTCACATTTATACTGAAATAAAAGGTTAAAATCAAAGCAGACAAGAAAGTATATATAGAAAGAGAACCAAATTGACCAAATGTAAACTGGGTTTTACCCCTAAATATCGCAAGTCAAAGGTCTCAAGTTCTCAGGTAGAAAACTCAAAATAATGCAGCCCCGTACCAAGACAAGGACCTGTCGAGTATTTTGTACCCTATATACTTCACTAGTTCAATTATGAAATACATCCAAAATTGTCCACCCTACCATTCAATCAACAGAAGTTTCCTGCCTCTAATTAAACAAGTATAGCTAACTTATCTAACTTCCATCACCTTCCCAAAAGACAAGCAACCTCATATATCTAAGCCATCACATTACAAATCATTTTCCTTCTGAATTACGACATCTCAATTTTTCTTCTAACTTATCGTGGCACCTTCTAAATCCTAGAAAAGCAGGTTCTTGAATATCACACCTATCATTATCATCGCCAGTTAACAATTAGACCTATTGACCGAGAATGACATCAATAAAATACAACAGTAAATTAATTGCAATGTACAATTTAGCATTGATATGATGATTGTGACATCCAGGATTGTTATGAGAAGTGAACCTGGGGGGTTTGAGGTTTCCCCTCCGGTTAGAAAATGACAGCAAGAACAAGAGCAAGAGCCATACCGTGAAGCATGTTGGATACGCTTCCCCGGCTATAGAAATCGTAGACAAGCAGCTTCTCGTCCTTGGAGTAGTAGTATGCCCGGAGCTCCGCCACATTGGCATGCCGAATCCGGCCGACGAGCTCCATCTGCTGCTCGAAGTCGCGGCGCCCGGCGCTCACCTCCTTGAGCCTCTTCACCACCACCGTGGTGGCGTCCTCCAGCACCGCCCGGTACGCCGTGCCGAACGCGCCCTTCCCAAGAACCTCGGCGGAAGCGCGGAGCAGGTCCTCCAAATCGAACGCCAATGCCGGGCCCTCGAAGAACACGATCCGGTTCCCGTCCCCGGCCTTGCCTATCACCGCCTTGGACTCCGGCGACTCCCTCCCCTTCTTCTCCCCGCTCTTGCCGGACACGACGCGGCTCACCTCCTCGTCGCCGCCGCCGCCGCTCCTGTTGCAGAACGCAATCAGGAAGACGGCGATGACCGCGGACACCGCGACGCACCCGCCGACGACAATGGCGAGGATGGCCGCCTGGCTGAGCCGCACCCGCCTCTTCGCCGGCGCGCCGGCCGCCGCAGGAGACCCCGAGGGCGGCGTCCCCGCTGGCGACGCCGACGCCGGCCGCGTCACGTTGTTCCCGGCGAACGCGGTGTCGTTGAACCTCAGCAACGAGGTGGGCACGGGGCCGTCGAGATGGTTGTTGGACAGATTCAAGAACTGGAGCGCCGGGAGGCCGAGGTCCGGGACGCGGCCGGAGAGGGAGTTGTTGGAGAGGTTGAGCGCGACGAGCTGGGTGAGGTTGGAGAGCGCGGCGGGGAGGGTGCCATTGAACCCGTTGAACGAGAGGTCGAGCACCTGCAGGGCCCGGAGCCGCGCGAGCTCCGGCGGGAGCGCGCCGGAGAAGGCGTTGAGCTGGAGGTGCAGCCCCGTGAGCGACGCGAGTGAGAGGAGCTCCTCCGGGAACTCGCCGGAGAGGCTGTTGGCGCGGAGGCTGAGCACCTGCAGCGCGGTGAGCCTGCCGAGCGTGCCCCGCGGCACGGGGCCGGAGAGGCCGAGGCCCGGGAGGCGGAGCGCCACGACGCGCGACCCGTCGCCGCTGCAGGTGACCCCCGTCCAGTTGCCGCAGACCCGCGGGGACGACGCCCAGTTGATGCGCCCCCTGCCGCCGCCCAGCCCCGCGAGGAAGTCGAGCAGCGCCGCCCTGTCCGCGTCCGGCTCAGCCGCGCACACCACCACCACCAGCGCCAGCGCCAGGAACGCCGCCAGGCACGGCAGCCTCGGCGGCGGCATGGCGGAAAACCAGCAGAAGCGGGGGAGAGTGCGTGTGGGTTTGGATCTGAGGAGATTGTGGTGGTGGAGATTGGAGAGGAGTCGAAGCTGCAGCGGCTGCGGCTGCGCGTGGTTGGGGAAACGTGCGCCAGGGGGGGTTCTTGCTGGGGTTGGGGTTGGTGCCGCGCGGGCGGGGCGTGGTGTTTGTTTTGCAGGATTT
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| CDS seq | ATGCCGCCGCCGAGGCTGCCGTGCCTGGCGGCGTTCCTGGCGCTGGCGCTGGTGGTGGTGGTGTGCGCGGCTGAGCCGGACGCGGACAGGGCGGCGCTGCTCGACTTCCTCGCGGGGCTGGGCGGCGGCAGGGGGCGCATCAACTGGGCGTCGTCCCCGCGGGTCTGCGGCAACTGGACGGGGGTCACCTGCAGCGGCGACGGGTCGCGCGTCGTGGCGCTCCGCCTCCCGGGCCTCGGCCTCTCCGGCCCCGTGCCGCGGGGCACGCTCGGCAGGCTCACCGCGCTGCAGGTGCTCAGCCTCCGCGCCAACAGCCTCTCCGGCGAGTTCCCGGAGGAGCTCCTCTCACTCGCGTCGCTCACGGGGCTGCACCTCCAGCTCAACGCCTTCTCCGGCGCGCTCCCGCCGGAGCTCGCGCGGCTCCGGGCCCTGCAGGTGCTCGACCTCTCGTTCAACGGGTTCAATGGCACCCTCCCCGCCGCGCTCTCCAACCTCACCCAGCTCGTCGCGCTCAACCTCTCCAACAACTCCCTCTCCGGCCGCGTCCCGGACCTCGGCCTCCCGGCGCTCCAGTTCTTGAATCTGTCCAACAACCATCTCGACGGCCCCGTGCCCACCTCGTTGCTGAGGTTCAACGACACCGCGTTCGCCGGGAACAACGTGACGCGGCCGGCGTCGGCGTCGCCAGCGGGGACGCCGCCCTCGGGGTCTCCTGCGGCGGCCGGCGCGCCGGCGAAGAGGCGGGTGCGGCTCAGCCAGGCGGCCATCCTCGCCATTGTCGTCGGCGGGTGCGTCGCGGTGTCCGCGGTCATCGCCGTCTTCCTGATTGCGTTCTGCAACAGGAGCGGCGGCGGCGGCGACGAGGAGGTGAGCCGCGTCGTGTCCGGCAAGAGCGGGGAGAAGAAGGGGAGGGAGTCGCCGGAGTCCAAGGCGGTGATAGGCAAGGCCGGGGACGGGAACCGGATCGTGTTCTTCGAGGGCCCGGCATTGGCGTTCGATTTGGAGGACCTGCTCCGCGCTTCCGCCGAGGTTCTTGGGAAGGGCGCGTTCGGCACGGCGTACCGGGCGGTGCTGGAGGACGCCACCACGGTGGTGGTGAAGAGGCTCAAGGAGGTGAGCGCCGGGCGCCGCGACTTCGAGCAGCAGATGGAGCTCGTCGGCCGGATTCGGCATGCCAATGTGGCGGAGCTCCGGGCATACTACTACTCCAAGGACGAGAAGCTGCTTGTCTACGATTTCTATAGCCGGGGAAGCGTATCCAACATGCTTCACGGAAAGAGAGGGGAGGACAGAACACCTTTGAACTGGGAAACCAGGGTAAGGATAGCCCTGGGAGCAGCAAGAGGGATTGCACACATTCACACTGAGAACAATGGGAAATTTGTTCACGGCAACATCAAGGCCTCAAATGTCTTCCTGAACAACCAGCAATATGGCTGTGTCTCCGACCTCGGCTTGGCATCGCTGATGAACCCAATCACCGCAAGGTCCCGTTCTCTGGGATATTGTGCACCAGAGGTCACAGATTCGAGGAAAGCATCGCAATGTTCAGATGTCTACAGCTTTGGTGTCTTCATACTTGAGCTCCTGACCGGGAGATCACCTGTTCAGATCACTGGTGGGGGCAATGAGGTTGTTCACCTTGTCAGATGGGTGCAATCTGTTGTCCGGGAGGAGTGGACTGCCGAGGTGTTTGACGTCGAGCTGATGAGGTACCCCAACATCGAGGAGGAGATGGTGGAGATGCTCCAGATCGCCATGGCATGCGTCTCAAGGACCCCAGAACGGCGGCCTAAGATGTCGGACGTGGTGAGGATGCTTGAAGATGTGCGGAGGACCGATACCGGGACGCGGACCTCGACGGAGGCATCCACTCCGGTGGTGGATGTTCAGAACAAGGCAGAGAGCTCATCTGCCGCTCACTGA
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| Protein seq | MPPPRLPCLAAFLALALVVVVCAAEPDADRAALLDFLAGLGGGRGRINWASSPRVCGNWTGVTCSGDGSRVVALRLPGLGLSGPVPRGTLGRLTALQVLSLRANSLSGEFPEELLSLASLTGLHLQLNAFSGALPPELARLRALQVLDLSFNGFNGTLPAALSNLTQLVALNLSNNSLSGRVPDLGLPALQFLNLSNNHLDGPVPTSLLRFNDTAFAGNNVTRPASASPAGTPPSGSPAAAGAPAKRRVRLSQAAILAIVVGGCVAVSAVIAVFLIAFCNRSGGGGDEEVSRVVSGKSGEKKGRESPESKAVIGKAGDGNRIVFFEGPALAFDLEDLLRASAEVLGKGAFGTAYRAVLEDATTVVVKRLKEVSAGRRDFEQQMELVGRIRHANVAELRAYYYSKDEKLLVYDFYSRGSVSNMLHGKRGEDRTPLNWETRVRIALGAARGIAHIHTENNGKFVHGNIKASNVFLNNQQYGCVSDLGLASLMNPITARSRSLGYCAPEVTDSRKASQCSDVYSFGVFILELLTGRSPVQITGGGNEVVHLVRWVQSVVREEWTAEVFDVELMRYPNIEEEMVEMLQIAMACVSRTPERRPKMSDVVRMLEDVRRTDTGTRTSTEASTPVVDVQNKAESSSAAH |
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| Function | Probable inactive receptor kinase At4g23740 [UniProtKB/Swiss-Prot:Q9SUQ3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g12390 | LOC_Os01g12390.1 | Chr01 | 6766497 | 6770164 | - | MSU_osa1r7 | ||
| CDS seq | ATGCCGCCGCCGAGGCTGCCGTGCCTGGCGGCGTTCCTGGCGCTGGCGCTGGTGGTGGTGGTGTGCGCGGCTGAGCCGGACGCGGACAGGGCGGCGCTGCTCGACTTCCTCGCGGGGCTGGGCGGCGGCAGGGGGCGCATCAACTGGGCGTCGTCCCCGCGGGTCTGCGGCAACTGGACGGGGGTCACCTGCAGCGGCGACGGGTCGCGCGTCGTGGCGCTCCGCCTCCCGGGCCTCGGCCTCTCCGGCCCCGTGCCGCGGGGCACGCTCGGCAGGCTCACCGCGCTGCAGGTGCTCAGCCTCCGCGCCAACAGCCTCTCCGGCGAGTTCCCGGAGGAGCTCCTCTCACTCGCGTCGCTCACGGGGCTGCACCTCCAGCTCAACGCCTTCTCCGGCGCGCTCCCGCCGGAGCTCGCGCGGCTCCGGGCCCTGCAGGTGCTCGACCTCTCGTTCAACGGGTTCAATGGCACCCTCCCCGCCGCGCTCTCCAACCTCACCCAGCTCGTCGCGCTCAACCTCTCCAACAACTCCCTCTCCGGCCGCGTCCCGGACCTCGGCCTCCCGGCGCTCCAGTTCTTGAATCTGTCCAACAACCATCTCGACGGCCCCGTGCCCACCTCGTTGCTGAGGTTCAACGACACCGCGTTCGCCGGGAACAACGTGACGCGGCCGGCGTCGGCGTCGCCAGCGGGGACGCCGCCCTCGGGGTCTCCTGCGGCGGCCGGCGCGCCGGCGAAGAGGCGGGTGCGGCTCAGCCAGGCGGCCATCCTCGCCATTGTCGTCGGCGGGTGCGTCGCGGTGTCCGCGGTCATCGCCGTCTTCCTGATTGCGTTCTGCAACAGGAGCGGCGGCGGCGGCGACGAGGAGGTGAGCCGCGTCGTGTCCGGCAAGAGCGGGGAGAAGAAGGGGAGGGAGTCGCCGGAGTCCAAGGCGGTGATAGGCAAGGCCGGGGACGGGAACCGGATCGTGTTCTTCGAGGGCCCGGCATTGGCGTTCGATTTGGAGGACCTGCTCCGCGCTTCCGCCGAGGTTCTTGGGAAGGGCGCGTTCGGCACGGCGTACCGGGCGGTGCTGGAGGACGCCACCACGGTGGTGGTGAAGAGGCTCAAGGAGGTGAGCGCCGGGCGCCGCGACTTCGAGCAGCAGATGGAGCTCGTCGGCCGGATTCGGCATGCCAATGTGGCGGAGCTCCGGGCATACTACTACTCCAAGGACGAGAAGCTGCTTGTCTACGATTTCTATAGCCGGGGAAGCGTATCCAACATGCTTCACGGAAAGAGAGGGGAGGACAGAACACCTTTGAACTGGGAAACCAGGGTAAGGATAGCCCTGGGAGCAGCAAGAGGGATTGCACACATTCACACTGAGAACAATGGGAAATTTGTTCACGGCAACATCAAGGCCTCAAATGTCTTCCTGAACAACCAGCAATATGGCTGTGTCTCCGACCTCGGCTTGGCATCGCTGATGAACCCAATCACCGCAAGGTCCCGTTCTCTGGGATATTGTGCACCAGAGGTCACAGATTCGAGGAAAGCATCGCAATGTTCAGATGTCTACAGCTTTGGTGTCTTCATACTTGAGCTCCTGACCGGGAGATCACCTGTTCAGATCACTGGTGGGGGCAATGAGGTTGTTCACCTTGTCAGATGGGTGCAATCTGTTGTCCGGGAGGAGTGGACTGCCGAGGTGTTTGACGTCGAGCTGATGAGGTACCCCAACATCGAGGAGGAGATGGTGGAGATGCTCCAGATCGCCATGGCATGCGTCTCAAGGACCCCAGAACGGCGGCCTAAGATGTCGGACGTGGTGAGGATGCTTGAAGATGTGCGGAGGACCGATACCGGGACGCGGACCTCGACGGAGGCATCCACTCCGGTGGTGGATGTTCAGAACAAGGCAGAGAGCTCATCTGCCGCTCACTGA
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| Protein seq | MPPPRLPCLAAFLALALVVVVCAAEPDADRAALLDFLAGLGGGRGRINWASSPRVCGNWTGVTCSGDGSRVVALRLPGLGLSGPVPRGTLGRLTALQVLSLRANSLSGEFPEELLSLASLTGLHLQLNAFSGALPPELARLRALQVLDLSFNGFNGTLPAALSNLTQLVALNLSNNSLSGRVPDLGLPALQFLNLSNNHLDGPVPTSLLRFNDTAFAGNNVTRPASASPAGTPPSGSPAAAGAPAKRRVRLSQAAILAIVVGGCVAVSAVIAVFLIAFCNRSGGGGDEEVSRVVSGKSGEKKGRESPESKAVIGKAGDGNRIVFFEGPALAFDLEDLLRASAEVLGKGAFGTAYRAVLEDATTVVVKRLKEVSAGRRDFEQQMELVGRIRHANVAELRAYYYSKDEKLLVYDFYSRGSVSNMLHGKRGEDRTPLNWETRVRIALGAARGIAHIHTENNGKFVHGNIKASNVFLNNQQYGCVSDLGLASLMNPITARSRSLGYCAPEVTDSRKASQCSDVYSFGVFILELLTGRSPVQITGGGNEVVHLVRWVQSVVREEWTAEVFDVELMRYPNIEEEMVEMLQIAMACVSRTPERRPKMSDVVRMLEDVRRTDTGTRTSTEASTPVVDVQNKAESSSAAH
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.433800 | 0.240643 | 1.287013 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0223600 | RBH | 0.795145 | 0.494080 | 6.639197 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g12720 | SBH | 2.440097 | 2.213032 | 1.813881 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0223600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0008880 | RBH | 0.264965 | 5.317512 | 2.655874 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0008530 | SBH | 0.107602 | 2.358540 | 2.051085 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0008910 | SBH | 0.670366 | 5.673035 | 2.616748 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0008430 | RBH | 0.086953 | 0.236979 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0008510 | RBH | 4.941630 | 9.678582 | 10.908407 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0110800 | RBH | 6.870935 | 7.1905195 | 5.9434835 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0008470 | SBH | 0.965336 | 0.442168 | 1.252954 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0110400 | RBH | 8.9216945 | 5.08408 | 17.9988025 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0008860 | SBH | 0.350327 | 0.170430 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0008510 | RBH | 1.165145 | 5.350219 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0008460 | SBH | 6.960842 | 12.573924 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0008530 | SBH | 0.295046 | 0.503956 | 0.437624 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0008370 | SBH | 0.233823 | 4.764675 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G008530 | RBH | 0.531288 | 2.036280 | 1.806357 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0008390 | SBH | 0.732987 | 8.534806 | 3.074212 |
