Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g08450 | OGI:01014930 | 9/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:4160946-4165165 | ||||||||
| Gene Symbol | OsRab1C1 | ||||||||||
| DNA seq | TTAGGACGAGCAGCACGACGTCTTCTGGTTGACAGGTTGCCCGCGGATCTGCACGGTCGGTGGCCTTGCATTTGAAGCGGCCGGTTGGCTAGCCATCCTGAGAAAAATGACAGGTGGGATGTTCGTTACTAAAATCTACCCAGATATGAGGGTAATACAAGAGCTACACTGCTCATGTGGATTTAAAGTTGTACCTGTCCTTGATGGATGCGGCCATAGCCATGAAGGCCTGCTCCACATTAGTGGCGTTCTTGGCACTTGTCTCCATGAAGGGGATGCCCATCTCATCAGCAAACGCCTGCGGGATATTTTAACGATTGTAGATATGTTAAAGGCGTATAAATAAGAGCATCACATGACAATGGTGAGAAAGCCAATACACAGTCGATCAAAGCCAATACACATTCAATCAAATGACTCTGGAGAGCTTACCTTAGCTGTTTCAGATGACACAACTTTGTTGGCAGTTAGGTCGCTCTTGTTCCCAACAAGGAGCTTGTTTACATTGTCACTTGCATAACGATCAATTTCATTCAACCACTGCTTCACATTGTTGAAGCTTTCTTGGTCTGTCACATCGTATACAATCTGCATGCACAAGATAGGATGAATTAGTTTAATGAAAGGGACAAGATGGCCAATACTTTGCAGAAAATAGCGGTTGGATCATGTGGCCAACTTACAATTATTCCATGAGCTCCCCGGTAATAGCTGCTTGTAATCGTCCTGAAACGTTCTTGTCCAGCAGTATCCCACTGTAACAAAGTAAAAGAGTATACTCATACCACAGTCTTAACAATATTTTCAAATACTAAATTCATGATGCACTTGGACTATTGCTCCACTTCAGATTACTCTATGGATATGGATCACATTTCACCAAGTTTAATGTACTTCTCAAAGTTTGCTACTCAAAAAAGAATAGTTTCTAAACAAATTTAAAGATTTCTCATCAGTGGCACAATTTGCAATAACAATGACGGACATACCAAAGCACTCCATAGCCCATATCTGAATTCAATTCTGGGTTTTAATATTATAAAGTATATACTTGCCAGAATTGAGTTCAGGTGTCGATACAACGTTCAGCATTCGAACACATTCAAATATGGGTAAAAAAATATCATATGCATATTTCGATAAGGGTAAGGTCCATTTTTAGCCCTTGAACTTGTTGTTCAAACTATTTCACCCCAAACTACAAAGAAATCGATTATTTTTCACCCTCAACTTTTAAACCAGCCAAAAGACACCCTGAGACATAATTTGTTAGTGGTTTTGTTTGAAATAGACATGATTTTCCTAATTCAGACTCTTATTATGCATATTAAGGTCCACCACCATGAAACTTACCTAGTTAAAGTTCATGACAACCACCATAACATATGGTTCAGGGTGTTGTGTCTGGCTTTGAATGTTTTGAAAAAATAACCAGTTTTGTAGTTCAGGGTGATAAATGGGCTTAGCAAAGTTCAAGGCCCAAAAATAGACTTTACCCTTTGGATAAAGAGAACACAATTAAGATGGTAAATCCTCTGAGACCAGATCTTGCCACAACCGCAAAAAATCATAAACTGAACAATTTTCACCCCTGACAATGAGGGCACACCATATAACTTACTCTCAAGAATCTATAGAATCTATTACGAGCAAGGAAAATGAAATTTCACCGATGAGCAGCACCAATATTTCACAAATATGGGAACATAACCTTCAGAACATATCTTTCTAGATTCATTCACAATAACCATTGCATCATAACTGGACATCCTTATTTATGAATTTGTCTAGCACAAGTAAAAAACAATACGGGATCAAAAGCGATGAAGAAAAGGTAGCAGTAATCTTACGATTTGAAGCTTGATGGTCTTCCCATCCTGCTCTACTGTCCGTATTTTCTGCAAACAAAATGCACAACTTATTGCTGTGCTACAAAAAGTAAACTTAACTCAAGTAAATCAACAATATATTACTTACAAAATCAACTCCAATTGTGCTGATATAGCTGTCCAGGTATGAGTCATCCTAATCACAGGAAGCAAGTACATCAATAACATTCACAATCTACGTAACAGAAAATTTAGTCAAGCTTCATGCTTGATTCTTTATTATTTAATACGAGTGAATTGTGGATTCATGATCTTACAGTTCATGTTTATAACAAAAAGATGACCAATGGAAGGAATCCCTTGCATAATTATCATAACCACTTTGCTATTGCAATAGTGAGGTATGATCCTACACTGCATGTTTCTACTGAAGCACATTTACATATAAGAACTATTTATTCCAGAATGACTTAGTACAAAAACACAATTAGGAGAATGAGACAATGAGTTAAACTCGTACCGCAAATCTGAGAAGCAAGCACGATTTCCCAACACCAGAATCACCAATGAGGAGAAGTTTGAAAAGGTAGTCGCTGAAATTGACCAAAAGAAAAAACTAGTGTTACAGTAGCAGTACATAGAGAAAATGAAATAACAATTACATGCATACAACTGCTACCTTCTTCATTTCAACACAGTGTTTTATCACATGTAGTAATGCACTCCTACAGTAGTGGGAATTATTTACAATAAAATGTTATCTTTCCATATCCCAAAAGTCAACTTCCCTTATAGGTAACTATCAAATCATGGCATGAATAAATGTCAATAGAGACCATTGTATTATTTAGGACTCCCTTATATATGCAGGTAAAAGTAACTGAATAATGATGCATATACATCTGCTCCAAAAGTATGTTGATATCCAAACGGGACCAATATGCCTAGTATTAGTACTTGTGGAAGATATCCAAATTCAAAACTATGGCAATGTTTTTACACATAACTACAGAGCAGACGGACATGAGCTGATATGATACATTGGCACGCACATAAGGCAACATTATAAACTAAATTTCCTGGTAGAATAAAATCCAATTCCCATTCCCCAAATATGTATGAGACATCAGCAAATCATGGTGTGATGAGCGATTGCCGAATTCCCCCTTTTGCAATTGACGTGATAATGAGGAGATCATCGTCAACAAAAAAAACAACCCGCGCGTCGTCAAAACCACGTGTGAAGAAGACGAAAAACCTAGCCACCAAGTTGAGATCCGGATCGAAACCATGCGAAGGGATCCCGCTCAGATCCGGGCAACCTAACCAAACGAGCAGCACGGCGAAACCGGGGGCGGAGATCACGAACCATAGGAAGGAAGGAAGGAGGAGGTGAGGGATGGGAGTGCTTACTACTCGGGATTCATGGCGGAGGGAGTGACCGCCGTGGATCGGGCGCCGCCGCTGCTTCGACCCACGGATCTGGAGACGAGGGAGAAGGAGACGGGGGGTGGGGAGGTGTCGTAAAAGTAGGAAGGATTTTGCAGGGGGGCAGGATGATGATAAATATACCGTCCGCCGCGCCGACTCGGAACTCGGAAGCGGGCGGCGTTTGCTTCGGCTCGACTGCTCCACGGACGCGTTTGCCTCGTGGATTTTATTTTGGATTTGCTACACATCTACCAGCTGTGTAAAAACAAAAAATATGTACTTTCTCCATGCTTAAAAAATTTAATTTAGGTGGTGTTTTTTTCTCTTAGAGATAAAAATTAAGTGTTTTAATGCAAAACGAGGTAATATTAACGTATAATTAATTAAGTTTTAATTATTACAAACTTGAAACATAGATTAATTTGATAGAATTCTAAGCGCCAAACATGCATCAGCCCAGGCCCACCCCACCCCACGTTCCGTCATTTCACTCCTACCGTTGTCGGAGTAAACGATTTACTCCTATCGCGCGCCCCAACCACCCAACTTTATTCGAGTAAACGATTTACTTCGATAATAAAAACAACTCCACTGCTTCCGATCCCACCCCACGTCCCGCATCGTGCTCCCACCATTATCGGAGTAAATGATTAACTGCGATAAAAACAATTTCTCTGCTTCCGGTATATATTATATTTTTCCCGTACCCAACCAACCACTCTCGCCCCTACTTCATTTTTTTCCTTTTTTTTGGGATCTGGATCGATCCACCATCCCACCCCACAGATCGGCGACACACCATGGAGGAGGAGGATGACACCGTGGTGGTTGATGGCAGTGGCCGGCGACGGTTGAGGCGAAGGCACGCTTCGGGCCTCGCTGCCGGACGCTAGGTATCACCTTAACCAGCAAAGAGGTGTTCACCTGGGCCAATAGCAACAACCAGCGGCTGCTCCACAT
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| CDS seq | ATGTGGAGCAGCCGCTGGTTGTTGCTATTGGCCCAGGTGAACACCTCTTTGCTGGTTAAGGTGATACCTAGCGTCCGGCAGCGAGGCCCGAAGCGTGCCTTCGCCTCAACCGTCGCCGGCCACTGCCATCAACCACCACGGTGTCATCCTCCTCCTCCATGCGACTACCTTTTCAAACTTCTCCTCATTGGTGATTCTGGTGTTGGGAAATCGTGCTTGCTTCTCAGATTTGCGGATGACTCATACCTGGACAGCTATATCAGCACAATTGGAGTTGATTTTAAAATACGGACAGTAGAGCAGGATGGGAAGACCATCAAGCTTCAAATCTGGGATACTGCTGGACAAGAACGTTTCAGGACGATTACAAGCAGCTATTACCGGGGAGCTCATGGAATAATTATTGTATACGATGTGACAGACCAAGAAAGCTTCAACAATGTGAAGCAGTGGTTGAATGAAATTGATCGTTATGCAAGTGACAATGTAAACAAGCTCCTTGTTGGGAACAAGAGCGACCTAACTGCCAACAAAGTTGTGTCATCTGAAACAGCTAAGGCGTTTGCTGATGAGATGGGCATCCCCTTCATGGAGACAAGTGCCAAGAACGCCACTAATGTGGAGCAGGCCTTCATGGCTATGGCCGCATCCATCAAGGACAGGATGGCTAGCCAACCGGCCGCTTCAAATGCAAGGCCACCGACCGTGCAGATCCGCGGGCAACCTGTCAACCAGAAGACGTCGTGCTGCTCGTCCTAA
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| Protein seq | MWSSRWLLLLAQVNTSLLVKVIPSVRQRGPKRAFASTVAGHCHQPPRCHPPPPCDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKSDLTANKVVSSETAKAFADEMGIPFMETSAKNATNVEQAFMAMAASIKDRMASQPAASNARPPTVQIRGQPVNQKTSCCSS |
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| Function | GTP-binding protein YPTM2 [UniProtKB/Swiss-Prot:Q05737] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g08450 | LOC_Os01g08450.1 | Chr01 | 4160946 | 4165165 | - | MSU_osa1r7 | ||
| CDS seq | ATGTGGAGCAGCCGCTGGTTGTTGCTATTGGCCCAGGTGAACACCTCTTTGCTGGTTAAGGTGATACCTAGCGTCCGGCAGCGAGGCCCGAAGCGTGCCTTCGCCTCAACCGTCGCCGGCCACTGCCATCAACCACCACGGTGTCATCCTCCTCCTCCATGCGACTACCTTTTCAAACTTCTCCTCATTGGTGATTCTGGTGTTGGGAAATCGTGCTTGCTTCTCAGATTTGCGGATGACTCATACCTGGACAGCTATATCAGCACAATTGGAGTTGATTTTAAAATACGGACAGTAGAGCAGGATGGGAAGACCATCAAGCTTCAAATCTGGGATACTGCTGGACAAGAACGTTTCAGGACGATTACAAGCAGCTATTACCGGGGAGCTCATGGAATAATTATTGTATACGATGTGACAGACCAAGAAAGCTTCAACAATGTGAAGCAGTGGTTGAATGAAATTGATCGTTATGCAAGTGACAATGTAAACAAGCTCCTTGTTGGGAACAAGAGCGACCTAACTGCCAACAAAGTTGTGTCATCTGAAACAGCTAAGGCGTTTGCTGATGAGATGGGCATCCCCTTCATGGAGACAAGTGCCAAGAACGCCACTAATGTGGAGCAGGCCTTCATGGCTATGGCCGCATCCATCAAGGACAGGATGGCTAGCCAACCGGCCGCTTCAAATGCAAGGCCACCGACCGTGCAGATCCGCGGGCAACCTGTCAACCAGAAGACGTCGTGCTGCTCGTCCTAA
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| Protein seq | MWSSRWLLLLAQVNTSLLVKVIPSVRQRGPKRAFASTVAGHCHQPPRCHPPPPCDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLNEIDRYASDNVNKLLVGNKSDLTANKVVSSETAKAFADEMGIPFMETSAKNATNVEQAFMAMAASIKDRMASQPAASNARPPTVQIRGQPVNQKTSCCSS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.129888 | 1.111867 | 2.863387 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0179700 | RBH | 2.677793 | 2.348264 | 15.967161 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g37800 | RBH | 11.473021 | 10.470535 | 12.906612 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0179700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0005870 | RBH | 1.070321 | 21.047716 | 10.513383 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0005540 | RBH | 0.938004 | 8.197268 | 7.421265 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0005830 | RBH | 0.848230 | 52.629498 | 24.515047 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0005470 | SBH | 0.175763 | 1.183927 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0005670 | SBH | 19.825401 | 59.172825 | 39.365284 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0072700 | RBH | 17.1904545 | 20.1405115 | 22.7353555 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0005620 | SBH | 0.210512 | 5.988070 | 3.409693 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0072800 | RBH | 18.44786 | 14.567158 | 35.217167 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0005430 | SBH | 2.230444 | 0.145252 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0005620 | SBH | 6.526249 | 18.036568 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0005680 | RBH | 16.306017 | 24.070997 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0005620 | RBH | 1.593266 | 1.593712 | 3.966012 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0005600 | SBH | 0.454047 | 35.010860 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G005640 | RBH | 0.457120 | 9.173372 | 7.614271 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0005520 | SBH | 1.593541 | 45.789207 | 25.666553 |
