Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g08250 | OGI:01014680 | 5/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:4024855-4030589 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTACGTAACAGGATTACAGTCATGCTGCAGACATTGCATAACACAATTCGGTGCATTATTACGCCAAACCGCGCTTTGCCCCGAACGGATAGCAATCTGAGCAAGTTCATGTGCGACCCTATTACACTCTCTATTACAGTGCATCAAACGCACTTCCTTAATTAACCCTATAACTGATCTTGCTGCTCGCAGCAGAAAAGACCATCTTGATCTCTCTTCAGTAGTGGACAACAACCTCGCAATCGCTGTGGCACAGTCATATTCAAGCATAACTGGCATGGGAATCCATTCAGCAGCTAGCTTCAGCCCTTCATAGCACGCAAGCAGCTCTGCTTCCTCCGCTGACACACATCGCCTGAGAAACTTCCAAGAAGACAACAGAACTTCGCCCCTCGAATTCCTGATTACAAGTCCAAGTGCCCCATTACCATTTTCAGGATTGAAAGCTCCATCGACATTGATTTTAGCCCAGCCATTCACAGACATAAGCCAACAAACACGTTGCTATGGAAAGGCCCGAGTTGGACCTGACTCCTTCCCCTGTTCAGGGCGACACAAAGCCTTCCCTTTTCTGTCAGCTCTTGGTTGCCGGTTGAGAAACAATGATTCAGCATAACTCCGAAGAAACACCACAGAACTAGTGACTGAAGCATGGCCGTCATTATGCACTATATTGTTTCGTAAAAACCAGGCTCACCATAACAGCAGGAATATTAACGCCCTCGTCTGATCGTCGGCACGGTTTATAAGATGTAGCAGCCAGTCAGGTCCTAACTGAGAGAACTCCTGTTCCCCCGGTAGCCACCGATTCTGCCGCATCTCTGCCCTCAGCGCAGCTGCTTTCGTGCATGCAACCGTAGCATGAAACGCATCTTCCACTTCTGCCCCACATATCTCACAGTTTGGCTTTTGTACAATCTGTCGTCGATGTTTATTATGTTGTGTGGCTAGACAATCTCTTGATACTCTCCAGGCAAAAATCCTTATTTTCTGCGGCACTTGCACATTCCAAATGTTCTTCCACAACTTCCTATCACCATCGCCATTTGAGCATTGTGCAACCTCTTCGTCAGCTCTGATCTGGGCCTGTAGGGCTAATTTGTAAGCAGAAAAAACAGTGAACATACCCACCTTATCATAGTGCCAAGCAATGAAGTCCTCTTCAGGGCTATGTGGCAATTGGATCCTCAAAATTTCCTCAGCATCCGGGGGATAGAAGATTCGACGAACTAGCTCTTCATTCCAAATTTGCTGATGTGGAACCATAAGATCCGAGACCCATTTGATTCTCAATCTAACAGTCTTTCCCAAAACCCTTAGGGTATGCTCTCTCGGTATCCAGTTATCCCTCCAGATTCTAACTTTGCTTCCTGATCCAATCCACCAAATTAGACCTTGTTTCAGCAGCTCTAACCCGTGGACCACCCCCTTCCAAGTTTCTGAAGAGTCCACAAGGAAAGTAGTATCACACAAGTCCCCATTGGGGTAATATTTTGCCTTTAAAATTTGAGCACACAAACTGTTGGGAAACTGGATCAGCCGCCATGCTTGCCAAGCTAGCAGAGCCTGGTTAAAAAGCTTTAAGTCCCTGAAACCAATTCCCCCTTGTCCTTTGGGTTTAATCAGTTGCTGCCACGAGATCCAATGGACTTTCCTTTTCTAACGGTCTTCTCCCCACCAAAATTTCCGGATCAGCTGCATATATTCCTCACAGAGCCCTGCTGGAAGCTTAAACACACTCATCACATAGGTCGGAATGGCCTGTAGGACTGATTTAATTAAAACTTCCTTCCCTCCCATAGAGAGGTATTTCTCATTCCAATCCGTTAATCTTTTCTCAAATCTCTCCTTCAAAGATTGGTGTCTTCCTGCCTTCAGTCTACCCATCGGTGTAGGCAGACCAAGATATTTATCTTCAAAGGAAGTGTGTTGAACTTGCAAAAGGGATCTGATGTCAGACTGCAGAGCATCCCCACAATGCTTTCCAAACATCAAAGAACATTTGGCCGGGCTCAGGAGTTGGCCTGTGCTTTGCTCATACAAAGTAAGAGCACTCTTAACCACATTAGTCTGTTCCATATTTGATTTAAAGAACAACAGGCTATCATCTGCAAACAAGAGATGGGAAATTCCAGGGGCTCTCCTGCAGACTTTTAGAGGTTGTAACCGTCCTGATCTTTCAGCTTCACTCAGCGCCGTTGATAAACCGTCTGCCACAAAGAGGAACAAATAGGGCGACAGGGGATCACCCTGTCGGAGGCCTCTGGTCGGTTTGAAGGATTCAAGCATAGATCCGTTGAAGCGAACAGCATAGCTAACAGAGGTAACACATGTCATCAATAGCTGAACCCATTGAGAACAAAAACCAACCTTAAGAAGAGCTCCCTCTAGGTATCTCCAATCCACCCTATCATACGCCTTTGTAAGGTCCAACTTGTAAGCACAGAATTGAGACTCAACCGATTTACACCGATTGATGGCATGGAAGCACTCAAAAGCTATGAGAGCATTGTCAGTGAACATCTGGCCGGGAATGAAGGCGCTTTGCGCTGGCACGATAACATCCTGAAGTAACGGCCGCATCCTATTCACCAAACACTTAGCAATCACCTTGTAAATCACATTACAAAGGCTTATTGGTCTGTAATCTTTCAAATCCTTTGGCTCTTTCTTTTTCGGAATTAACACAATGGCAGTGTCATTTACACCTTGTGGCATTCTTCTCTGTTCAAAGAACAGCTTAACAGCCGCAATAATGTCCCGTTTCAATACATCCCAATTCTTCTGAAAGAACCTTGCCGGAAAACCATCTGGCCCCGGCGCTTTTAACGGACCCATCTGGAACAAAGCATTTGAAATTTCGTCATCAGAGAATTCTTTACAAAGCAGCTTATTCATCTCCGACGTGACTCTGGGCTGTACCAAATCAAGTAATGGTTCTGGCTCGACAGAAGGGTCATTAGTGTAAAGCTCTTTGAAGAAATTTGATGTCATATCTTCCATCTCCTCCCTCTTATCACACCAGGTTCCATCACTTCTCTGCAGCCTATTAATCTTGTTTTTCTTGTGGCGCCAAGCCGCTTTCCTATGAAAAAAGGATGTGTTTCGGTCACCTTCCTTCAACCAAGAGATTCTTGATCTCTGCAGCCATTGCATTTCCTCCCTATACAAGAGTATCCAGCTTCCTGGATATATCGAGATAGTCTTGATCACTAGCACACCTGCCTGCCATCTGAAGCTCTGCCAATCGATTCCTTGTTTCTTTAATATCTTTGCTAACTTAACCAAATTTATCACGGCTCCAAGTCTGCAGTGCTCCCATCACAGACTTTAAGCGGCTTGCCACTGAGCCTAAGTCTGATATATGTCCCTGTAGTTGCCAAGCAGATTTAATCTCATCTGTCAGATGCTCATCCCTCTCCCACATAATTTCATACCGCAGACACCGATCCCCTTTCTTGATGCGATCCACTCGGGAGGCTTGGAGAAGAATAGGACTGTGATCAGAACTGGACACAGTAAGGTGAATCACTTCTGCAGCAGGAAAGAGAGAAGACCAACTCTGGCTTGCTACTGCACGATCCAGTCGAACTCGCACATTATTCCTTCCTTTTTGCTTGTTATCAAAAGTCCAGGGGGCACCCGTGAAACCTAAATCAAACACATCGCAGTGCGACAAGACTTCCCGGAAATCCATAATCTGCTTCTCCCTTCTCTTGTGGTCAGAAAAATGCTCAAACTGCCACATAGCTTCATTAAAGTCGCCCACTAAGCACCATGGAGCAGTAGAATTTGATTTGATGCGACGAAGAAGAGTCCACATGTTATGCCTTTCGCTAGCTTTGGGCTCACCATACACAAAGGTGCATCGCCATTGCACAGGGCAGCTTTCGTCCTTAATGAGCACATCAATATATCTGAAGTTGTAGGATAGAAGATCCACTTGTACTGTGTCATCCCAAAAGAGGGCTAGTCCATCCCCCCCCTCCCCGTTCCTTCTCCAGGCACTGCTACACAATTCCGCAGCCCCAATCTCTATTTTAAGCCACACACTCTTTCTATATTTTGATGTGTTTCAGACAAAAAAACCAGCTTGGGCTTGTGTGTTTGCACTAGGCAAACAAGATCTTGAACTGTCCGAGGCCTCCCTGATCCTCGGCAGTTCTAGCTTAAAATATTCATTGCTCCTGACGGGCTTCCTTTGGAATGCCCGTCAGGTGGATCGACTTTGCTGTCTATAGAGACAAACTCTTACTCCTCTTACTATCACCTCCAACTAGAACATCAAACGAAGGTCCATCATATCCTGGGCCAAGGAGAGATTTATCCATACTCCTCTTTCCTAGCACAGGTTTTACCCCATCATCGATATTTTCCTTATGTCCCTCACCAAGTTCCTCATCTCTAAGCTGGTTTATAAGAGAGATATCTTCATGGATCGTTGATAGGGGTGGAACATGTTCGTCCACCTCCTCACGGCCATTCCCAGCACCTTCATCAAGCTGTTCGTACTGATTGATTGAATCTTTGCTAGACACCCAAGTCTCCCCTGCAGTCTCACTCCTTATTTGTCCCTCCTTAGCTTGCTGTGAAGCTGCGTGGAAGGTAGGCTGATCTTCTTGAGTTTTCCCCATATGCTCCCACTGTTCAGCTAGCTTCCTGACCTCACCATCCTCCCTGGATTTTCCTGGGTTCCTAGCATTTAAACCCTTCAACTCTTCCTGCACCGTAGGGATCTCTGCCTCTATCTCATCCCGGTTAGCAAAATTTTCCTTTACTGGAGCATTTTCCTCTGGCGAGTTCTTCTTCCTATCTTCCTTGCCTGATGGGCCATCTTTATTTTGGCTTCCCGCAGGAGCTGGCTTGGACTGGTTCTCACCTGGGAACCATAGATTTCTCTTCGCGTTGTTGTCAACTTTACCAGGCAGAGCCCAGCTACGATGTTCAAACTGCTTATAAGGTGACGCCCTGAGATTAAGGCCAAACCTCACCGTTTGCTTATCCGAGGGTAAATCACATTCCCTCTCCATGTGACCAATGTGGCCACAGTAAAAGCAAAACCGAGGGATCCTCTCATACTTGACATCATACCTCTGAACCACCGAAGATGACTCCTTGTCTTTCAGTTTCAGCCAACACGTCAGTGGTTTATCCACAGGGTGCTCCGCCCGAACTCTCATAAAATCATCCCATGCTCTTCCCTGATCATCCACCGCCACCTTACGAACCTCACCCAGCCTTGCACCAATCAATTTACCCATTGTTTCAGTCATCATAGACAGGGGTAGATCGTAAATTCTCACCCAAACTGGTAGCGAGTTCAGTTTCACATCCGAAGGTCTAGACTTGCCATCATACTCCGTGATCAGGAAAGCATCCCCTTGATAGATCCAAGGACCGCCTCCAGTCGCAAACCTGAAATCCCCTGCAGATTGGAATTCCAGTAGAAATCGGTTATCATGCAGGCGTTTGTACTCCATGCCTTGTCTCAAGCCCCATGCCTTTTGCATGGCTTCAAACAGTCCCTTTGCGCTGAAAGTCCTCCTTGAGAAGAACTTCCCAATGGCCACATACTGTGTATCAATATGCTTTTTAGCCTCATCAAAGTCTACCACAATTGCATCTTCATCGTCTTCCTCCTCCGAAGCCCCGCCCAGATCTTCAATCGGTTCCTCATCGGTTGTTGCACCACCTTCATCACGATGACGATCGCGCGGATCTTCATGGGATGCCAT
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| CDS seq | ATGGCATCCCATGAAGATCCGCGCGATCGTCATCGTGATGAAGGTGGTGCAACAACCGATGAGGAACCGATTGAAGATCTGGGCGGGGCTTCGGAGGAGGAAGACGATGAAGATGCAATTGTGGTAGACTTTGATGAGGCTAAAAAGCATATTGATACACAGTATGTGGCCATTGGGAAGTTCTTCTCAAGGAGGACTTTCAGCGCAAAGGGACTGTTTGAAGCCATGCAAAAGGCATGGGGCTTGAGACAAGGCATGGAGTACAAACGCCTGCATGATAACCGATTTCTACTGGAATTCCAATCTGCAGGGGATTTCAGGTTTGCGACTGGAGGCGGTCCTTGGATCTATCAAGGGGATGCTTTCCTGATCACGGAGTATGATGGCAAGTCTAGACCTTCGGATGTGAAACTGAACTCGCTACCAGTTTGGGTGAGAATTTACGATCTACCCCTGTCTATGATGACTGAAACAATGGGTAAATTGATTGGTGCAAGGCTGGGTGAGGTTCGTAAGGTGGCGGTGGATGATCAGGGAAGAGCATGGGATGATTTTATGAGAGTTCGGGCGGAGCACCCTGTGGATAAACCACTGACGTGTTGGCTGAAACTGAAAGACAAGGAGTCATCTTCGGTGGTTCAGAGGTATGATGTCAAGTATGAGAGGATCCCTCGGTTTTGCTTTTACTGTGGCCACATTGGTCACATGGAGAGGGAATGTGATTTACCCTCGGATAAGCAAACGGTGAGGTTTGGCCTTAATCTCAGGGCGTCACCTTATAAGCAGTTTGAACATCGTAGCTGGGCTCTGCCTGGTAAAGTTGACAACAACGCGAAGAGAAATCTATGGTTCCCAGGTGAGAACCAGTCCAAGCCAGCTCCTGCGGGAAGCCAAAATAAAGATGGCCCATCAGGCAAGGAAGATAGGAAGAAGAACTCGCCAGAGGAAAATGCTCCAGTAAAGGAAAATTTTGCTAACCGGGATGAGATAGAGGCAGAGATCCCTACGGTGCAGGAAGAGTTGAAGGGTTTAAATGCTAGGAACCCAGGAAAATCCAGGGAGGATGGTGAGGTCAGGAAGCTAGCTGAACAGTGGGAGCATATGGGGAAAACTCAAGAAGATCAGCCTACCTTCCACGCAGCTTCACAGCAAGCTAAGGAGGGACAAATAAGGAGTGAGACTGCAGGGGAGACTTGGGTGTCTAGCAAAGATTCAATCAATCAGTACGAACAGCTTGATGAAGGTGCTGGGAATGGCCGTGAGGAGGTGGACGAACATGTTCCACCCCTATCAACGATCCATGAAGATATCTCTCTTATAAACCAGCTTAGAGATGAGGAACTTGGTGAGGGACATAAGGAAAATATCGATGATGGGGTAAAACCTGTGCTAGGAAAGAGGAGTATGGATAAATCTCTCCTTGGCCCAGGATATGATGGACCTTCGTTTGATGTTCTAGTTGGAGGTGATAAGATTGGGGCTGCGGAATTGTGTAGCAGTGCCTGGAGAAGGAACGGGGAGGGGGGGGATGGACTAGCCCTCTTTTGGGATGACACAGTACAAGTGGATCTTCTATCCTACAACTTCAGATATATTGATGTGCTCATTAAGGACGAAAGCTGCCCTGTGCAATGGCGATGCACCTTTGTGTATGGTGAGCCCAAAGCTAGCGAAAGGCATAACATGTGGACTCTTCTTCGTCGCATCAAATCAAATTCTACTGCTCCATGGTGCTTAGTGGGCGACTTTAATGAAGCTATGTGGCAGTTTGAGCATTTTTCTGACCACAAGAGAAGGGAGAAGCAGATTATGGATTTCCGGGAAGTCTTGTCGCACTGCGATGTGTTTGATTTAGGTTTCACGGGTGCCCCCTGGACTTTTGATAACAAGCAAAAAGGAAGGAATAATGTGCGAGTTCGACTGGATCGTGCAGTAGCAAGCCAGAGTTGGTCTTCTCTCTTTCCTGCTGCAGAAGTGATTCACCTTACTGTGTCCAGTTCTGATCACAGTCCTATTCTTCTCCAAGCCTCCCGAGTGGATCGCATCAAGAAAGGGGATCGGTGTCTGCGACTTGGAGCCGTGATAAATTTGGTTAAGTTAGCAAAGATATTAAAGAAACAAGGAATCGATTGGCAGAGCTTCAGATGGCAGGCAGGTGTGCTAGTGATCAAGACTATCTCGATATATCCAGGAAGCTGGATACTCTTGTATAGGGAGGAAATGCAATGGCTGCAGAGATCAAGAATCTCTTGGTTGAAGGAAGGTGACCGAAACACATCCTTTTTTCATAGGAAAGCGGCTTGGCGCCACAAGAAAAACAAGATTAATAGGCTGCAGAGAAGTGATGGAACCTGGTGTGATAAGAGGGAGGAGATGGAAGATATGACATCAAATTTCTTCAAAGAGCTTTACACTAATGACCCTTCTGTCGAGCCAGAACCATTACTTGATTTGGTACAGCCCAGAGTCACGTCGGAGATGAATAAGCTGCTTTGTAAAGAATTCTCTGATGACGAAATTTCAAATGCTTTGTTCCAGATGGGTCCGTTAAAAGCGCCGGGGCCAGATGGTTTTCCGGCAAGGTTCTTTCAGAAGAATTGGGATGTATTGAAACGGGACATTATTGCGGCTGTTAAGCTGTTCTTTGAACAGAGAAGAATGCCACAAGGTGTAAATGACACTGCCATTGTGTTAATTCCGAAAAAGAAAGAGCCAAAGGATTTGAAAGATTACAGACCAATAAGCCTTTGTAATGTGATTTACAAGGTGATTGCTAAGTGTTTGGTGAATAGGATGCGGCCGTTACTTCAGGATGTTATCGTGCCAGCGCAAAGCGCCTTCATTCCCGGCCAGATGTTCACTGACAATGCTCTCATAGCTTTTGAGTGCTTCCATGCCATCAATCGGTGTAAATCGGTTGAGTCTCAATTCTGTGCTTACAAGTTGGACCTTACAAAGGCGTATGATAGGGTGGATTGGAGATACCTAGAGGGAGCTCTTCTTAAGGTTGGTTTTTGTTCTCAATGGGTTCAGCTATTGATGACATGTGTTACCTCTGTTAGCTATGCTGTTCGCTTCAACGGATCTATGCTTGAATCCTTCAAACCGACCAGAGGCCTCCGACAGGGTGATCCCCTGTCGCCCTATTTGTTCCTCTTTGTGGCAGACGGTTTATCAACGGCGCTGAGTGAAGCTGAAAGATCAGGACGGTTACAACCTCTAAAAGTCTGCAGGAGAGCCCCTGGAATTTCCCATCTCTTGTTTGCAGATGATAGCCTGTTGTTCTTTAAATCAAATATGGAACAGACTAATGTGGTTAAGAGTGCTCTTACTTTGTATGAGCAAAGCACAGGCCAACTCCTGAGCCCGGCCAAATGTTCTTTGATGTTTGGAAAGCATTGTGGGGATGCTCTGCAGTCTGACATCAGATCCCTTTTGCAAGTTCAACACACTTCCTTTGAAGATAAATATCTTGGTCTGCCTACACCGATGGGTAGACTGAAGGCAGGAAGACACCAATCTTTGAAGGAGAGATTTGAGAAAAGATTAACGGATTGGAATGAGAAATACCTCTCTATGGGAGGGAAGGAAGTTTTAATTAAATCAGTCCTACAGGCCATTCCGACCTATGTGATGAGTGTGTTTAAGCTTCCAGCAGGGCTCTGTGAGGAATATATGCAGCTGATCCGGAAATTTTGGGACTTAAAGCTTTTTAACCAGGCTCTGCTAGCTTGGCAAGCATGGCGGCTGATCCAGTTTCCCAACAGTTTGTGTGCTCAAATTTTAAAGGCAAAATATTACCCCAATGGGGACTTGTGTGATACTACTTTCCTTGTGGACTCTTCAGAAACTTGGAAGGGGGTGGTCCACGGGTTAGAGCTGCTGAAACAAGGTCTAATTTGGTGGATTGGATCAGGAAGCAAAGTTAGAATCTGGAGGGATAACTGGATACCGAGAGAGCATACCCTAAGGGTTTTGGGAAAGACTGTTAGATTGAGAATCAAATGGGTCTCGGATCTTATGGTTCCACATCAGCAAATTTGGAATGAAGAGCTAGTTCGTCGAATCTTCTATCCCCCGGATGCTGAGGAAATTTTGAGGATCCAATTGCCACATAGCCCTGAAGAGGACTTCATTGCTTGGCACTATGATAAGGTGGGTATGTTCACTGTTTTTTCTGCTTACAAATTAGCCCTACAGGCCCAGATCAGAGCTGACGAAGAGGTTGCACAATGCTCAAATGGCGATGGTGATAGGAAGTTGTGGAAGAACATTTGGAATGTGCAAGTGCCGCAGAAAATAAGGATTTTTGCCTGGAGAGTATCAAGAGATTGTCTAGCCACACAACATAATAAACATCGACGACAGATTGTACAAAAGCCAAACTGTGAGATATGTGGGGCAGAAGTGGAAGATGCGTTTCATGCTACGGTTGCATGCACGAAAGCAGCTGCGCTGAGGGCAGAGATGCGGCAGAATCGGTGGCTACCGGGGGAACAGGAGTTCTCTCAGTTAGGACCTGACTGGCTGCTACATCTTATAAACCGTGCCGACGATCAGACGAGGGCGTTAATATTCCTGCTGTTATGGAATTCGAGGGGCGAAGTTCTGTTGTCTTCTTGGAAGTTTCTCAGGCGATGTGTGTCAGCGGAGGAAGCAGAGCTGCTTGCGTGCTATGAAGGGCTGAAGCTAGCTGCTGAATGGATTCCCATGCCAGTTATGCTTGAATATGACTGTGCCACAGCGATTGCGAGGTTGTTGTCCACTACTGAAGAGAGATCAAGATGGTCTTTTCTGCTGCGAGCAGCAAGATCAGTTATAGGGTTAATTAAGGAAGTGCGTTTGATGCACTGTAATAGAGAGTGTAATAGGGTCGCACATGAACTTGCTCAGATTGCTATCCGTTCGGGGCAAAGCGCGGTTTGGCGTAATAATGCACCGAATTGTGTTATGCAATGTCTGCAGCATGACTGTAATCCTGTTACGTAA
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| Protein seq | MASHEDPRDRHRDEGGATTDEEPIEDLGGASEEEDDEDAIVVDFDEAKKHIDTQYVAIGKFFSRRTFSAKGLFEAMQKAWGLRQGMEYKRLHDNRFLLEFQSAGDFRFATGGGPWIYQGDAFLITEYDGKSRPSDVKLNSLPVWVRIYDLPLSMMTETMGKLIGARLGEVRKVAVDDQGRAWDDFMRVRAEHPVDKPLTCWLKLKDKESSSVVQRYDVKYERIPRFCFYCGHIGHMERECDLPSDKQTVRFGLNLRASPYKQFEHRSWALPGKVDNNAKRNLWFPGENQSKPAPAGSQNKDGPSGKEDRKKNSPEENAPVKENFANRDEIEAEIPTVQEELKGLNARNPGKSREDGEVRKLAEQWEHMGKTQEDQPTFHAASQQAKEGQIRSETAGETWVSSKDSINQYEQLDEGAGNGREEVDEHVPPLSTIHEDISLINQLRDEELGEGHKENIDDGVKPVLGKRSMDKSLLGPGYDGPSFDVLVGGDKIGAAELCSSAWRRNGEGGDGLALFWDDTVQVDLLSYNFRYIDVLIKDESCPVQWRCTFVYGEPKASERHNMWTLLRRIKSNSTAPWCLVGDFNEAMWQFEHFSDHKRREKQIMDFREVLSHCDVFDLGFTGAPWTFDNKQKGRNNVRVRLDRAVASQSWSSLFPAAEVIHLTVSSSDHSPILLQASRVDRIKKGDRCLRLGAVINLVKLAKILKKQGIDWQSFRWQAGVLVIKTISIYPGSWILLYREEMQWLQRSRISWLKEGDRNTSFFHRKAAWRHKKNKINRLQRSDGTWCDKREEMEDMTSNFFKELYTNDPSVEPEPLLDLVQPRVTSEMNKLLCKEFSDDEISNALFQMGPLKAPGPDGFPARFFQKNWDVLKRDIIAAVKLFFEQRRMPQGVNDTAIVLIPKKKEPKDLKDYRPISLCNVIYKVIAKCLVNRMRPLLQDVIVPAQSAFIPGQMFTDNALIAFECFHAINRCKSVESQFCAYKLDLTKAYDRVDWRYLEGALLKVGFCSQWVQLLMTCVTSVSYAVRFNGSMLESFKPTRGLRQGDPLSPYLFLFVADGLSTALSEAERSGRLQPLKVCRRAPGISHLLFADDSLLFFKSNMEQTNVVKSALTLYEQSTGQLLSPAKCSLMFGKHCGDALQSDIRSLLQVQHTSFEDKYLGLPTPMGRLKAGRHQSLKERFEKRLTDWNEKYLSMGGKEVLIKSVLQAIPTYVMSVFKLPAGLCEEYMQLIRKFWDLKLFNQALLAWQAWRLIQFPNSLCAQILKAKYYPNGDLCDTTFLVDSSETWKGVVHGLELLKQGLIWWIGSGSKVRIWRDNWIPREHTLRVLGKTVRLRIKWVSDLMVPHQQIWNEELVRRIFYPPDAEEILRIQLPHSPEEDFIAWHYDKVGMFTVFSAYKLALQAQIRADEEVAQCSNGDGDRKLWKNIWNVQVPQKIRIFAWRVSRDCLATQHNKHRRQIVQKPNCEICGAEVEDAFHATVACTKAAALRAEMRQNRWLPGEQEFSQLGPDWLLHLINRADDQTRALIFLLLWNSRGEVLLSSWKFLRRCVSAEEAELLACYEGLKLAAEWIPMPVMLEYDCATAIARLLSTTEERSRWSFLLRAARSVIGLIKEVRLMHCNRECNRVAHELAQIAIRSGQSAVWRNNAPNCVMQCLQHDCNPVT |
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| Function | LINE-1 retrotransposable element ORF2 protein [UniProtKB/Swiss-Prot:P11369] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g08250 | LOC_Os01g08250.1 | Chr01 | 4024855 | 4030589 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCATCCCATGAAGATCCGCGCGATCGTCATCGTGATGAAGGTGGTGCAACAACCGATGAGGAACCGATTGAAGATCTGGGCGGGGCTTCGGAGGAGGAAGACGATGAAGATGCAATTGTGGTAGACTTTGATGAGGCTAAAAAGCATATTGATACACAGTATGTGGCCATTGGGAAGTTCTTCTCAAGGAGGACTTTCAGCGCAAAGGGACTGTTTGAAGCCATGCAAAAGGCATGGGGCTTGAGACAAGGCATGGAGTACAAACGCCTGCATGATAACCGATTTCTACTGGAATTCCAATCTGCAGGGGATTTCAGGTTTGCGACTGGAGGCGGTCCTTGGATCTATCAAGGGGATGCTTTCCTGATCACGGAGTATGATGGCAAGTCTAGACCTTCGGATGTGAAACTGAACTCGCTACCAGTTTGGGTGAGAATTTACGATCTACCCCTGTCTATGATGACTGAAACAATGGGTAAATTGATTGGTGCAAGGCTGGGTGAGGTTCGTAAGGTGGCGGTGGATGATCAGGGAAGAGCATGGGATGATTTTATGAGAGTTCGGGCGGAGCACCCTGTGGATAAACCACTGACGTGTTGGCTGAAACTGAAAGACAAGGAGTCATCTTCGGTGGTTCAGAGGTATGATGTCAAGTATGAGAGGATCCCTCGGTTTTGCTTTTACTGTGGCCACATTGGTCACATGGAGAGGGAATGTGATTTACCCTCGGATAAGCAAACGGTGAGGTTTGGCCTTAATCTCAGGGCGTCACCTTATAAGCAGTTTGAACATCGTAGCTGGGCTCTGCCTGGTAAAGTTGACAACAACGCGAAGAGAAATCTATGGTTCCCAGGTGAGAACCAGTCCAAGCCAGCTCCTGCGGGAAGCCAAAATAAAGATGGCCCATCAGGCAAGGAAGATAGGAAGAAGAACTCGCCAGAGGAAAATGCTCCAGTAAAGGAAAATTTTGCTAACCGGGATGAGATAGAGGCAGAGATCCCTACGGTGCAGGAAGAGTTGAAGGGTTTAAATGCTAGGAACCCAGGAAAATCCAGGGAGGATGGTGAGGTCAGGAAGCTAGCTGAACAGTGGGAGCATATGGGGAAAACTCAAGAAGATCAGCCTACCTTCCACGCAGCTTCACAGCAAGCTAAGGAGGGACAAATAAGGAGTGAGACTGCAGGGGAGACTTGGGTGTCTAGCAAAGATTCAATCAATCAGTACGAACAGCTTGATGAAGGTGCTGGGAATGGCCGTGAGGAGGTGGACGAACATGTTCCACCCCTATCAACGATCCATGAAGATATCTCTCTTATAAACCAGCTTAGAGATGAGGAACTTGGTGAGGGACATAAGGAAAATATCGATGATGGGGTAAAACCTGTGCTAGGAAAGAGGAGTATGGATAAATCTCTCCTTGGCCCAGGATATGATGGACCTTCGTTTGATGTTCTAGTTGGAGGTGATAAGATTGGGGCTGCGGAATTGTGTAGCAGTGCCTGGAGAAGGAACGGGGAGGGGGGGGATGGACTAGCCCTCTTTTGGGATGACACAGTACAAGTGGATCTTCTATCCTACAACTTCAGATATATTGATGTGCTCATTAAGGACGAAAGCTGCCCTGTGCAATGGCGATGCACCTTTGTGTATGGTGAGCCCAAAGCTAGCGAAAGGCATAACATGTGGACTCTTCTTCGTCGCATCAAATCAAATTCTACTGCTCCATGGTGCTTAGTGGGCGACTTTAATGAAGCTATGTGGCAGTTTGAGCATTTTTCTGACCACAAGAGAAGGGAGAAGCAGATTATGGATTTCCGGGAAGTCTTGTCGCACTGCGATGTGTTTGATTTAGGTTTCACGGGTGCCCCCTGGACTTTTGATAACAAGCAAAAAGGAAGGAATAATGTGCGAGTTCGACTGGATCGTGCAGTAGCAAGCCAGAGTTGGTCTTCTCTCTTTCCTGCTGCAGAAGTGATTCACCTTACTGTGTCCAGTTCTGATCACAGTCCTATTCTTCTCCAAGCCTCCCGAGTGGATCGCATCAAGAAAGGGGATCGGTGTCTGCGACTTGGAGCCGTGATAAATTTGGTTAAGTTAGCAAAGATATTAAAGAAACAAGGAATCGATTGGCAGAGCTTCAGATGGCAGGCAGGTGTGCTAGTGATCAAGACTATCTCGATATATCCAGGAAGCTGGATACTCTTGTATAGGGAGGAAATGCAATGGCTGCAGAGATCAAGAATCTCTTGGTTGAAGGAAGGTGACCGAAACACATCCTTTTTTCATAGGAAAGCGGCTTGGCGCCACAAGAAAAACAAGATTAATAGGCTGCAGAGAAGTGATGGAACCTGGTGTGATAAGAGGGAGGAGATGGAAGATATGACATCAAATTTCTTCAAAGAGCTTTACACTAATGACCCTTCTGTCGAGCCAGAACCATTACTTGATTTGGTACAGCCCAGAGTCACGTCGGAGATGAATAAGCTGCTTTGTAAAGAATTCTCTGATGACGAAATTTCAAATGCTTTGTTCCAGATGGGTCCGTTAAAAGCGCCGGGGCCAGATGGTTTTCCGGCAAGGTTCTTTCAGAAGAATTGGGATGTATTGAAACGGGACATTATTGCGGCTGTTAAGCTGTTCTTTGAACAGAGAAGAATGCCACAAGGTGTAAATGACACTGCCATTGTGTTAATTCCGAAAAAGAAAGAGCCAAAGGATTTGAAAGATTACAGACCAATAAGCCTTTGTAATGTGATTTACAAGGTGATTGCTAAGTGTTTGGTGAATAGGATGCGGCCGTTACTTCAGGATGTTATCGTGCCAGCGCAAAGCGCCTTCATTCCCGGCCAGATGTTCACTGACAATGCTCTCATAGCTTTTGAGTGCTTCCATGCCATCAATCGGTGTAAATCGGTTGAGTCTCAATTCTGTGCTTACAAGTTGGACCTTACAAAGGCGTATGATAGGGTGGATTGGAGATACCTAGAGGGAGCTCTTCTTAAGGTTGGTTTTTGTTCTCAATGGGTTCAGCTATTGATGACATGTGTTACCTCTGTTAGCTATGCTGTTCGCTTCAACGGATCTATGCTTGAATCCTTCAAACCGACCAGAGGCCTCCGACAGGGTGATCCCCTGTCGCCCTATTTGTTCCTCTTTGTGGCAGACGGTTTATCAACGGCGCTGAGTGAAGCTGAAAGATCAGGACGGTTACAACCTCTAAAAGTCTGCAGGAGAGCCCCTGGAATTTCCCATCTCTTGTTTGCAGATGATAGCCTGTTGTTCTTTAAATCAAATATGGAACAGACTAATGTGGTTAAGAGTGCTCTTACTTTGTATGAGCAAAGCACAGGCCAACTCCTGAGCCCGGCCAAATGTTCTTTGATGTTTGGAAAGCATTGTGGGGATGCTCTGCAGTCTGACATCAGATCCCTTTTGCAAGTTCAACACACTTCCTTTGAAGATAAATATCTTGGTCTGCCTACACCGATGGGTAGACTGAAGGCAGGAAGACACCAATCTTTGAAGGAGAGATTTGAGAAAAGATTAACGGATTGGAATGAGAAATACCTCTCTATGGGAGGGAAGGAAGTTTTAATTAAATCAGTCCTACAGGCCATTCCGACCTATGTGATGAGTGTGTTTAAGCTTCCAGCAGGGCTCTGTGAGGAATATATGCAGCTGATCCGGAAATTTTGGGACTTAAAGCTTTTTAACCAGGCTCTGCTAGCTTGGCAAGCATGGCGGCTGATCCAGTTTCCCAACAGTTTGTGTGCTCAAATTTTAAAGGCAAAATATTACCCCAATGGGGACTTGTGTGATACTACTTTCCTTGTGGACTCTTCAGAAACTTGGAAGGGGGTGGTCCACGGGTTAGAGCTGCTGAAACAAGGTCTAATTTGGTGGATTGGATCAGGAAGCAAAGTTAGAATCTGGAGGGATAACTGGATACCGAGAGAGCATACCCTAAGGGTTTTGGGAAAGACTGTTAGATTGAGAATCAAATGGGTCTCGGATCTTATGGTTCCACATCAGCAAATTTGGAATGAAGAGCTAGTTCGTCGAATCTTCTATCCCCCGGATGCTGAGGAAATTTTGAGGATCCAATTGCCACATAGCCCTGAAGAGGACTTCATTGCTTGGCACTATGATAAGGTGGGTATGTTCACTGTTTTTTCTGCTTACAAATTAGCCCTACAGGCCCAGATCAGAGCTGACGAAGAGGTTGCACAATGCTCAAATGGCGATGGTGATAGGAAGTTGTGGAAGAACATTTGGAATGTGCAAGTGCCGCAGAAAATAAGGATTTTTGCCTGGAGAGTATCAAGAGATTGTCTAGCCACACAACATAATAAACATCGACGACAGATTGTACAAAAGCCAAACTGTGAGATATGTGGGGCAGAAGTGGAAGATGCGTTTCATGCTACGGTTGCATGCACGAAAGCAGCTGCGCTGAGGGCAGAGATGCGGCAGAATCGGTGGCTACCGGGGGAACAGGAGTTCTCTCAGTTAGGACCTGACTGGCTGCTACATCTTATAAACCGTGCCGACGATCAGACGAGGGCGTTAATATTCCTGCTGTTATGGAATTCGAGGGGCGAAGTTCTGTTGTCTTCTTGGAAGTTTCTCAGGCGATGTGTGTCAGCGGAGGAAGCAGAGCTGCTTGCGTGCTATGAAGGGCTGAAGCTAGCTGCTGAATGGATTCCCATGCCAGTTATGCTTGAATATGACTGTGCCACAGCGATTGCGAGGTTGTTGTCCACTACTGAAGAGAGATCAAGATGGTCTTTTCTGCTGCGAGCAGCAAGATCAGTTATAGGGTTAATTAAGGAAGTGCGTTTGATGCACTGTAATAGAGAGTGTAATAGGGTCGCACATGAACTTGCTCAGATTGCTATCCGTTCGGGGCAAAGCGCGGTTTGGCGTAATAATGCACCGAATTGTGTTATGCAATGTCTGCAGCATGACTGTAATCCTGTTACGTAA
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| Protein seq | MASHEDPRDRHRDEGGATTDEEPIEDLGGASEEEDDEDAIVVDFDEAKKHIDTQYVAIGKFFSRRTFSAKGLFEAMQKAWGLRQGMEYKRLHDNRFLLEFQSAGDFRFATGGGPWIYQGDAFLITEYDGKSRPSDVKLNSLPVWVRIYDLPLSMMTETMGKLIGARLGEVRKVAVDDQGRAWDDFMRVRAEHPVDKPLTCWLKLKDKESSSVVQRYDVKYERIPRFCFYCGHIGHMERECDLPSDKQTVRFGLNLRASPYKQFEHRSWALPGKVDNNAKRNLWFPGENQSKPAPAGSQNKDGPSGKEDRKKNSPEENAPVKENFANRDEIEAEIPTVQEELKGLNARNPGKSREDGEVRKLAEQWEHMGKTQEDQPTFHAASQQAKEGQIRSETAGETWVSSKDSINQYEQLDEGAGNGREEVDEHVPPLSTIHEDISLINQLRDEELGEGHKENIDDGVKPVLGKRSMDKSLLGPGYDGPSFDVLVGGDKIGAAELCSSAWRRNGEGGDGLALFWDDTVQVDLLSYNFRYIDVLIKDESCPVQWRCTFVYGEPKASERHNMWTLLRRIKSNSTAPWCLVGDFNEAMWQFEHFSDHKRREKQIMDFREVLSHCDVFDLGFTGAPWTFDNKQKGRNNVRVRLDRAVASQSWSSLFPAAEVIHLTVSSSDHSPILLQASRVDRIKKGDRCLRLGAVINLVKLAKILKKQGIDWQSFRWQAGVLVIKTISIYPGSWILLYREEMQWLQRSRISWLKEGDRNTSFFHRKAAWRHKKNKINRLQRSDGTWCDKREEMEDMTSNFFKELYTNDPSVEPEPLLDLVQPRVTSEMNKLLCKEFSDDEISNALFQMGPLKAPGPDGFPARFFQKNWDVLKRDIIAAVKLFFEQRRMPQGVNDTAIVLIPKKKEPKDLKDYRPISLCNVIYKVIAKCLVNRMRPLLQDVIVPAQSAFIPGQMFTDNALIAFECFHAINRCKSVESQFCAYKLDLTKAYDRVDWRYLEGALLKVGFCSQWVQLLMTCVTSVSYAVRFNGSMLESFKPTRGLRQGDPLSPYLFLFVADGLSTALSEAERSGRLQPLKVCRRAPGISHLLFADDSLLFFKSNMEQTNVVKSALTLYEQSTGQLLSPAKCSLMFGKHCGDALQSDIRSLLQVQHTSFEDKYLGLPTPMGRLKAGRHQSLKERFEKRLTDWNEKYLSMGGKEVLIKSVLQAIPTYVMSVFKLPAGLCEEYMQLIRKFWDLKLFNQALLAWQAWRLIQFPNSLCAQILKAKYYPNGDLCDTTFLVDSSETWKGVVHGLELLKQGLIWWIGSGSKVRIWRDNWIPREHTLRVLGKTVRLRIKWVSDLMVPHQQIWNEELVRRIFYPPDAEEILRIQLPHSPEEDFIAWHYDKVGMFTVFSAYKLALQAQIRADEEVAQCSNGDGDRKLWKNIWNVQVPQKIRIFAWRVSRDCLATQHNKHRRQIVQKPNCEICGAEVEDAFHATVACTKAAALRAEMRQNRWLPGEQEFSQLGPDWLLHLINRADDQTRALIFLLLWNSRGEVLLSSWKFLRRCVSAEEAELLACYEGLKLAAEWIPMPVMLEYDCATAIARLLSTTEERSRWSFLLRAARSVIGLIKEVRLMHCNRECNRVAHELAQIAIRSGQSAVWRNNAPNCVMQCLQHDCNPVT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g08720 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0006660 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0005380 | RBH | 0.0 | 0.0 | 0.205484 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0005640 | RBH | 0.0 | 0.0 | 4.436706 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0005280 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0006320 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0070900 | RBH | 0.014581 | 0.0056025 | 0.151993 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0006270 | SBH | 0.000000 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0071100 | SBH | 0.0729065 | 0.0092605 | 0.148514 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0006080 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0006280 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0005510 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0006280 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0006240 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G006280 | SBH | 0.000000 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0006180 | SBH | 0.0 | 0.0 | 0.0 |
