Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g07350 | OGI:01012700 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:3467858-3472117 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GACAGAATAACAGAACAAAACTCCGTTTCCACTCCTGCTCTCCATTGGTAACTGAATGGATCAGGAATGAATGAATGATGATAGTTTTAACCATACATGATGATTCAGCTAAAACTGACAATCACCTTAGCTGAAATGCTGAATCGTGTATATTAAACCAAAGGCTGCTCGCTGAACAAAGCTCAAATGCCATCTGAACAAAGCTCATTTACACCAGGAACAAACATCACCCATGTCTGGGAGTGACCATAGTTCAGAATTTGACCATGTCTGGGAGTGGCTTTGCATTACCATCGACAGCAAAATGGCTGAAATAATTACTGTATAGCATGCAAGCATAAATTTCCTAATGTCATCCTACAACTGTCTAGAAGAACAAATTTGTCTTCAATGGTGTTCGTCTTCAACTGTGGAGGGTCATGAAATGATAAGCTGGTTTGAGCACCATGCCGTTCCTTCATCCCACAGCTTCTTATGGTACATAAACCGCGGGGCTGTAATTTCAAGCAGAACAAGCAGATAACAGTCCATGAGAAATTTAAAATGGCTTAACCATGAAAGAAACAAGCAGCATGGACACGATAAAACTAAAGGAAATGTAGAGTGATTATCCAGAAAGAGCAGAAAAACCAAGCTAAATAACTCACCGTGCAATTCTCATCTCGAACCTGATCTGCCCCTCTTCCTCTTTCCGGTTGATCTTGTTTGAACTGTCCTGTCTGCCTGTGTGCGGCGAGTCCGTGATCGAGATCGCTTCTCAGAACCGAGGCCAGACTCAGTTTCCTGATCAGGCGCCATGGAATGATGTATATCTTCCTCTTTATCCCTCTGTTGCTCTGCCTCTGGTTCAGCTGCAGTTGTTGCAGCAGTCGATGAGCATGGAACCAGATCCACAATGTCGCAAAGTGATGATCCACCAAGTTCCCCAATAACTTCTACACATGTTCTGGTGACTTGGTCAACAAAAGCACGGCATTTGCCTCTAGAGCAACTTTTTTGAGAAGCTGCCTCCTTCGCAAGGACAGTGAGTTTGTCGGTCTGGGGCAAACGATGGGAATTTCAGAGATATATCAAAGTATCCTGCTGGTGGTGGCGAGTCTATCATCCAACCATCATCACCATAGATACATGCATACGTGTTCTTGTTAGTTGAAAAATCTTCACAAAATAATTATGTAATCCGTGCATGCGGTTTGCAATAGAATTATTTAGTGATTCATGTTCAATTGAAAATTATATGCAGCTTTTGAAGTTCAGAATTTATGATATACTTGTTCTAGATCAATGCAACGCATGGGTATTTGGCTAGTAAATATCAAAAGAAGGTAACCTGAATGAAGCTCACACGATCACACCTGCATGGTAGTAGCATGATTTATTTTACAAGTAGGATGTCTTACCACTGAGTGGATCAAATGAGCCCTGGGGGTGTAACGAAGCTGAGAAGCACGAAAAGGATCTTCAGAATCAGAAATTGCACTCCCACCAGATGCCCCACCCTTGTGACCATTACTTATCCTCTTCGGTGTGCACAGGCGAATACGTGTTGATCTTCTGTACCACCGCAAATAATCCATATAACTGCTGTGGTCATATGGCCGGTCTTCCATGACAACATCTTGCTCCTTTGCTTCCCACATATCCACAAAAGACTTGTGCTTCTGTGCCCAGTCATTATGAACCCTTCCACGACGGCACCTGCAAAACATTAGAAAATTTTATGATTCGGCTACCTGTAGATGATTCTATAATTTACCAGGACACACAGTCATGTACAAGAAATAATAAGAATAAAAACAGCAAAGTTCTGTTTTGAAGATACCAGTGAAGCTCCGCACTAGTGTCCCGCAATGGAGGTGGGCACACCTGATGGAGGCCAAATTGGCGCATCACTCTCTCAGGCATGTAGATCTCCACCATAAAGAAGTAAAGTAGAGGTGCTCGGGTTAGCCACAAATGAGAATCCTGGGTACAAATAGGGGCTAGCTGTAGTTCCTTCATCCGTTCCTCCCTATATGGGCACCAAACAACCTGGTCATCCGTTAGCAAGTCAAACTCATTCGTGAAGTGCTCATAGCAACGTGCGGGAGCTGCTCGACGGGCGCACACCCCCACAACCCATCGTAAACCAACTGTGGGTCTATCCCTCTCATCCTCTAGCTCCTCCACATTTGGGTATTTTAGCTTCACCAGGTCTGGCCTGCCAATTGGAAAATGCTCCCATGACCAAAATTGAAGGAGCAAAAGACAACCAGTCAGATTACTTCCATCTGACTGCCTCCTGCAAGCATCACACATTGCCCTGTAGAGATATGCCAGAGTAGCGGAACCCCAACTGTATGAACCAATATTCTCAAGATCAGCAATCAGTGGAAAGGGATAGAAGGTATACAAATCACCAGAGGCATCAGGAAACAGCAGACCACTAATCAGGCTAAGGATGTATGCCCTGGCATGCTGCTTGATGGTCTCCTCGTCAGCATCTTCTGGACAATTGTTGAACTCAGCTCTGACCCATGAAACCCTCAATCCAGGACGTGGCCTATCCGGCGGAGGAGCCTTCCCAAGGTATCGCTCAACCAATTCATTCTGGGGCTCTGTTGGGTTTACAGTGACAGCATGGCCAGCGATTGGCAATCCAAGAATCATTGCAACATCCTGTAGTGTGATTGTGATCTCACCACAAGGCATGTGAAAAGTGTGAGTTTCAGGTCTCCACCTATCAACTAGTGCAGAGACGAGTGCCCGATCAATGGAGGGCAGACCAGCCCTACAAATGTTTGCCAGTCCCATCAGGCCAGCGGGCCTAAGGTAACGCTCATACCTCCTGTCAAAGCGAAGAGGTTCACGGGTACGAGGGTTGAGCTCAGTCAAATGCTGTACCAAACATTGGAAATTGCAAATCAACAGTTTGTTACACGACAAAAGATTGTAATATAAATGCTATAGGTACTCTTTGATCTACCTGGCCTGATGCTAAAGCACGAGCCCGATGATCAGCATCATACTGCCCAATTAAATCATAGGAAGTGGTATCAACTGCTTCTGAAGCTCCATTCTGATCTGGACAACCATCATCAGAGAAGGTCCTGGTGCTCTTTCTTGGTTTTCGTTGCCGTGTGTTCTGAGGATGTCCATTTAGTGGACTAACATTCACCGTTGAAGGGATAACAAACGACATGTCCTGTTCTGGATTCTGCGGTTGGCCATTTTGACGTTGTGCATAAAGCGGTTTGATAGCCATTAGTGCTCTCTCTGAGGATATGCCCTCTGTCAAGGAACAAATTTCTGCTTGAACAAAAATCTCTAGGCAGTTCCACTCAGTCCCATTGAAAACAGCTTTCACATAGCTACTCCATGACATGTCATCATCGATAGGCACCATGATGAAGTGCCGATGAGCACCACCACCAACGTTCAACCTTCCCTGCGCACGAATGCTGAGCATCGTAGGCACCCACCCGAGCTTCTTGTACACGGCATCAATCAGTTCATCGAATGCAGGCTTCGCCTTGAACCATAAACCCTCCTCGGCGAGGTTGCCAAACTCCACCCCGTTTGGACCCTTCACCAGCTCCCCGCCACTGTAAACTCGCACAAATCTGTCCATCTCTGCAGCCAAACATGAATGCACCCCAATTCAAGATCAGCTCAAAGCCTCAAATCCAGTTTCAGTAATCTATAGCATGAACAATGAGTCCATGATGTATGAGGAGCATACGAACAAGTTCTTGTTAAACGAATACGAAGCACTTAGATAACAAAATCAACCCAAGTTATCCACTCAACTGAGGTACCATACCAACCAGAGAAAACCCAAGAAATGCTCTTACAAGTAGTATCCTAGGAACTGCAACATGTCAATTCTCAAATGCTCAAACCTAGTTTTAAACCCACTCCACACCATTCGCAATGAAAAAAAAAGGGTAATATAGTGACCAACGCAAGCTACACCATGCGAGTGACAAACAGCTTAGCTAAAATTTCCTCTCGATGCTCACTGGCGGCGCGGGGGGGCATCACCTATACTGAACTGGTGGAACAAAGGTAGATGAACTGTTCATCCAAATGGATCTTATCTCCGCGACCGCGAGCGGTGACGGAGGCTTCGGGAGGGGAGGAGAGGAACGGGAGTGCGGCGGGGCTTACCTTACCGCGGCGGTGGCGGCGCCGAAGGAATCCGCGGCGGCAGCGGCGTCGCGGGGTGGCGCGGCGGCGAGTGGGGAACGCGGCTTTCTTTTTTTCACCTGGTTTTTGTTT
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| CDS seq | ATGGGACTGGCAAACATTTGTAGGGCTGGTCTGCCCTCCATTGATCGGGCACTCGTCTCTGCACTAGTTGATAGGTGGAGACCTGAAACTCACACTTTTCACATGCCTTGTGGTGAGATCACAATCACACTACAGGATGTTGCAATGATTCTTGGATTGCCAATCGCTGGCCATGCTGTCACTGTAAACCCAACAGAGCCCCAGAATGAATTGGTTGAGCGATACCTTGGGAAGGCTCCTCCGCCGGATAGGCCACGTCCTGGATTGAGGGTTTCATGGGTCAGAGCTGAGTTCAACAATTGTCCAGAAGATGCTGACGAGGAGACCATCAAGCAGCATGCCAGGGCATACATCCTTAGCCTGATTAGTGGTCTGCTGTTTCCTGATGCCTCTGGTGATTTGTATACCTTCTATCCCTTTCCACTGATTGCTGATCTTGAGAATATTGGTTCATACAGTTGGGGTTCCGCTACTCTGGCATATCTCTACAGGGCAATGTGTGATGCTTGCAGGAGGCAGTCAGATGGAAGTAATCTGACTGGTTGTCTTTTGCTCCTTCAATTTTGGTCATGGGAGCATTTTCCAATTGGCAGGCCAGACCTGGTGAAGCTAAAATACCCAAATGTGGAGGAGCTAGAGGATGAGAGGGATAGACCCACAGTTGGTTTACGATGGGTTGTGGGGGTGTGCGCCCGTCGAGCAGCTCCCGCACGTTGCTATGAGCACTTCACGAATGAGTTTGACTTGCTAACGGATGACCAGGTTGTTTGGTGCCCATATAGGGAGGAACGGATGAAGGAACTACAGCTAGCCCCTATTTGTACCCAGGATTCTCATTTGTGGCTAACCCGAGCACCTCTACTTTACTTCTTTATGGTGGAGATCTACATGCCTGAGAGAGTGATGCGCCAATTTGGCCTCCATCAGGTGTGCCCACCTCCATTGCGGGACACTAGTGCGGAGCTTCACTGGTGCCGTCGTGGAAGGGTTCATAATGACTGGGCACAGAAGCACAAGTCTTTTGTGGATATGTGGGAAGCAAAGGAGCAAGATGTTGTCATGGAAGACCGGCCATATGACCACAGCAGTTATATGGATTATTTGCGGTGGTACAGAAGATCAACACGTATTCGCCTGTGCACACCGAAGAGGATAAGTAATGGTCACAAGGGTGGGGCATCTGGTGGGAGTGCAATTTCTGATTCTGAAGATCCTTTTCGTGCTTCTCAGCTTCGTTACACCCCCAGGGCTCATTTGATCCACTCAGTGACCGACAAACTCACTGTCCTTGCGAAGGAGGCAGCTTCTCAAAAAAGTTGCTCTAGAGGCAAATGCCGTGCTTTTGTTGACCAAGTCACCAGAACATGTGTAGAAGTTATTGGGGAACTTGGTGGATCATCACTTTGCGACATTGTGGATCTGGTTCCATGCTCATCGACTGCTGCAACAACTGCAGCTGAACCAGAGGCAGAGCAACAGAGGGATAAAGAGGAAGATATACATCATTCCATGGCGCCTGATCAGGAAACTGAGTCTGGCCTCGGTTCTGAGAAGCGATCTCGATCACGGACTCGCCGCACACAGGCAGACAGGACAGTTCAAACAAGATCAACCGGAAAGAGGAAGAGGGGCAGATCAGGTTCGAGATGA
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| Protein seq | MGLANICRAGLPSIDRALVSALVDRWRPETHTFHMPCGEITITLQDVAMILGLPIAGHAVTVNPTEPQNELVERYLGKAPPPDRPRPGLRVSWVRAEFNNCPEDADEETIKQHARAYILSLISGLLFPDASGDLYTFYPFPLIADLENIGSYSWGSATLAYLYRAMCDACRRQSDGSNLTGCLLLLQFWSWEHFPIGRPDLVKLKYPNVEELEDERDRPTVGLRWVVGVCARRAAPARCYEHFTNEFDLLTDDQVVWCPYREERMKELQLAPICTQDSHLWLTRAPLLYFFMVEIYMPERVMRQFGLHQVCPPPLRDTSAELHWCRRGRVHNDWAQKHKSFVDMWEAKEQDVVMEDRPYDHSSYMDYLRWYRRSTRIRLCTPKRISNGHKGGASGGSAISDSEDPFRASQLRYTPRAHLIHSVTDKLTVLAKEAASQKSCSRGKCRAFVDQVTRTCVEVIGELGGSSLCDIVDLVPCSSTAATTAAEPEAEQQRDKEEDIHHSMAPDQETESGLGSEKRSRSRTRRTQADRTVQTRSTGKRKRGRSGSR |
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| Function | Serine/threonine-protein phosphatase 7 long form homolog [UniProtKB/Swiss-Prot:Q9LNG5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g07350 | LOC_Os01g07350.1 | Chr01 | 3467858 | 3472117 | - | MSU_osa1r7 | ||
| CDS seq | ATGGGACTGGCAAACATTTGTAGGGCTGGTCTGCCCTCCATTGATCGGGCACTCGTCTCTGCACTAGTTGATAGGTGGAGACCTGAAACTCACACTTTTCACATGCCTTGTGGTGAGATCACAATCACACTACAGGATGTTGCAATGATTCTTGGATTGCCAATCGCTGGCCATGCTGTCACTGTAAACCCAACAGAGCCCCAGAATGAATTGGTTGAGCGATACCTTGGGAAGGCTCCTCCGCCGGATAGGCCACGTCCTGGATTGAGGGTTTCATGGGTCAGAGCTGAGTTCAACAATTGTCCAGAAGATGCTGACGAGGAGACCATCAAGCAGCATGCCAGGGCATACATCCTTAGCCTGATTAGTGGTCTGCTGTTTCCTGATGCCTCTGGTGATTTGTATACCTTCTATCCCTTTCCACTGATTGCTGATCTTGAGAATATTGGTTCATACAGTTGGGGTTCCGCTACTCTGGCATATCTCTACAGGGCAATGTGTGATGCTTGCAGGAGGCAGTCAGATGGAAGTAATCTGACTGGTTGTCTTTTGCTCCTTCAATTTTGGTCATGGGAGCATTTTCCAATTGGCAGGCCAGACCTGGTGAAGCTAAAATACCCAAATGTGGAGGAGCTAGAGGATGAGAGGGATAGACCCACAGTTGGTTTACGATGGGTTGTGGGGGTGTGCGCCCGTCGAGCAGCTCCCGCACGTTGCTATGAGCACTTCACGAATGAGTTTGACTTGCTAACGGATGACCAGGTTGTTTGGTGCCCATATAGGGAGGAACGGATGAAGGAACTACAGCTAGCCCCTATTTGTACCCAGGATTCTCATTTGTGGCTAACCCGAGCACCTCTACTTTACTTCTTTATGGTGGAGATCTACATGCCTGAGAGAGTGATGCGCCAATTTGGCCTCCATCAGGTGTGCCCACCTCCATTGCGGGACACTAGTGCGGAGCTTCACTGGTGCCGTCGTGGAAGGGTTCATAATGACTGGGCACAGAAGCACAAGTCTTTTGTGGATATGTGGGAAGCAAAGGAGCAAGATGTTGTCATGGAAGACCGGCCATATGACCACAGCAGTTATATGGATTATTTGCGGTGGTACAGAAGATCAACACGTATTCGCCTGTGCACACCGAAGAGGATAAGTAATGGTCACAAGGGTGGGGCATCTGGTGGGAGTGCAATTTCTGATTCTGAAGATCCTTTTCGTGCTTCTCAGCTTCGTTACACCCCCAGGGCTCATTTGATCCACTCAGTGACCGACAAACTCACTGTCCTTGCGAAGGAGGCAGCTTCTCAAAAAAGTTGCTCTAGAGGCAAATGCCGTGCTTTTGTTGACCAAGTCACCAGAACATGTGTAGAAGTTATTGGGGAACTTGGTGGATCATCACTTTGCGACATTGTGGATCTGGTTCCATGCTCATCGACTGCTGCAACAACTGCAGCTGAACCAGAGGCAGAGCAACAGAGGGATAAAGAGGAAGATATACATCATTCCATGGCGCCTGATCAGGAAACTGAGTCTGGCCTCGGTTCTGAGAAGCGATCTCGATCACGGACTCGCCGCACACAGGCAGACAGGACAGTTCAAACAAGATCAACCGGAAAGAGGAAGAGGGGCAGATCAGGTTCGAGATGA
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| Protein seq | MGLANICRAGLPSIDRALVSALVDRWRPETHTFHMPCGEITITLQDVAMILGLPIAGHAVTVNPTEPQNELVERYLGKAPPPDRPRPGLRVSWVRAEFNNCPEDADEETIKQHARAYILSLISGLLFPDASGDLYTFYPFPLIADLENIGSYSWGSATLAYLYRAMCDACRRQSDGSNLTGCLLLLQFWSWEHFPIGRPDLVKLKYPNVEELEDERDRPTVGLRWVVGVCARRAAPARCYEHFTNEFDLLTDDQVVWCPYREERMKELQLAPICTQDSHLWLTRAPLLYFFMVEIYMPERVMRQFGLHQVCPPPLRDTSAELHWCRRGRVHNDWAQKHKSFVDMWEAKEQDVVMEDRPYDHSSYMDYLRWYRRSTRIRLCTPKRISNGHKGGASGGSAISDSEDPFRASQLRYTPRAHLIHSVTDKLTVLAKEAASQKSCSRGKCRAFVDQVTRTCVEVIGELGGSSLCDIVDLVPCSSTAATTAAEPEAEQQRDKEEDIHHSMAPDQETESGLGSEKRSRSRTRRTQADRTVQTRSTGKRKRGRSGSR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.102436 | 0.242771 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g07920 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0004900 | RBH | 0.068272 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0004600 | RBH | 0.0 | 0.0 | 0.422851 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0004850 | RBH | 0.000000 | 0.0 | 2.809726 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0004510 | RBH | 0.079346 | 0.039090 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0004740 | RBH | 0.0 | 1.635761 | 3.696936 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0061500 | RBH | 1.277554 | 3.804716 | 2.283627 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0004660 | RBH | 0.0 | 0.0 | 0.163999 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0062500 | RBH | 1.35022 | 2.711586 | 4.6095195 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0004510 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0004670 | RBH | 0.0 | 6.169390 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0004730 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0004690 | RBH | 0.000000 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0004660 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G004730 | RBH | 0.103899 | 1.135893 | 0.641662 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0004620 | RBH | 1.399844 | 7.124602 | 0.552289 |
