Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g05860 | OGI:01008970 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:2805584-2808152 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GAGAGAGCGCTCTGGTACCCGTTCCCTCCGCCGCTCTCGTGCTCATCTCCGGTACGATGCCGCCGCCGCGGGCGTCCGCCATCCTCTCCGCCGCCTGCAGGTCCAGCAGGACGCTCTTCGGTAGGCACCACCTGCACCGACTCCCCTTCTTCTTTTTTTTTTCTTTTTCTCTTGGCCCCTTCTGATTTTTTTCATCATCTCTTGATGAGTCCATCACACCGCGCACTGTTTCATTATCTGAATTTGAATGCATATACTGAAGTGGAACGAGGTTTCGTTCTCTGAATTTAAGTGCGGGGTACTAATTTAAACTTTGTTCATGCGTAGTTATTAGGAGGCTCGGCTTCCTTGGTTCCTGCACGCCAACTGTTCGTCAGAATGCCTCAGTGGAGCTTCCCGGGGCAGGCTTATATCCACGCTTTCACCAGAGCATTCTCCCAATTCACTGCGTTGTTGGATCTCTACGGCTTTGTCATTCTACCGCTTTGGATGGTTCCAAGGATGTCCATGTCAGCGAAATCGTTAAAATCCTCAAGTCTAGAGATGGCGACAGTGAGCTCGCCGAAGTTCTCAATCAATTTGCAGACGAGATGGATGAGGATGTTGTGCTAAAGGTGCTCCAGAAGCAGAGGTCCAATTGGAAAGTCGCACTATCTTTCTTCAAATGGGCAGCTGGTCTGCCCCAGTATAACCATGGGTCAAGGGCCTACACGGAGATGCTTGACATTCTTGGGAGGATGAAGAAGGTCAGGCTCATGAGACAACTGTTTGATGAGATTCCTGTGGAGAGCCGCCAGTCAGTGGTCACAAACAGGATGTTTGCTGTCCTGTTAAACCGGTATGCAGGCGCGCACAAGGTGCAGGAGGCGATAGATATGTTCTACAAGAGGAAGGATTATGGGTTTGAGCTTGACTTGGTTGGATTCCAGATACTTTTGATGTCTCTCTGTCGGTACAAGCATGTTGAGGAAGCAGAGGCCCTCTTTCTCCAAAAGAAAGATGAGTTCCCTCCTGTCATAAAGAGCTGGAACATCATTCTTAATGGTTGGTGTGTCAAGGGAAGCTTGGCAGACGCTAAAAGGGTTTGGAATGAGATAATTGCGTCTAAGCTTAAGCCTGACCTGTTCACCTATGGTACATTCATAAATTCGCTTACAAAATCTGGCAAACTTAGTACTGCAGTAAAACTATTTACAAGCATGTGGGAGAAAGGGATCAATCCTGATGTGGCAATTTGTAATTGTATCATCGATCAATTGTGCTTCAAGAAAAGGATTCCAGAAGCACTTGAGATTTTTGGTGAGATGAATGATCGTGGTTGTCAGGCCGATGTTGCTACCTACAACACTTTGATAAAACACTTCTGTAAGATTAATCGGATGGAGAAAGTCTATGAGCTTTTGGATGACATGGAGGTTAAGGGCGTCTCTCCAAACAATATGACATACTCCTACATTCTGAAGACGACAGAGAAACCCAAAGATGTTATTTCATTGATGCAGAGAATGGAGAAGTCTGGTTGCAGACTGGACTCTGATACATATAACTTAATATTGAACCTTTATGTCAGTTGGGATTATGAGAAAGGGGTTCAGCTAGTATGGGATGAAATGGAGAGGAATGGATCAGGCCCGGATCAACGATCATTTACTATAATGGTTCATGGACTCCATTCCCACGATAAACTGGATGAGGCTTTGCATTATTATAGAACGATGGAGTCGAGAGGGATGACACCAGAACCAAGGACGAAGCTATTGGTAAAAGCAATACGTATGAAGAAAGATGAACCTGCTACAGAAGAACCTCTTACCAGGAAGAATCTAAAATTGGATCCAATTTCAAGACTATTCCATGTTCGTAAATAGTTCATCAATAGATTATACTCCAGTTGGGGGCTTAGGTTTATGGGCTGACCAAATCTAGCCTAAGAATGTCCAGCTAGCCCAGGTTTATGCAGCTGTGAAGATGTCAATTTGTTGGATATTCTAGGAGTTTCATGGCTGAATGTGAGGCATTGAGTAGGGTGTGCCGCTGTTACTTAATAAAGATAGTCACTTTTTGCTCAAGCATTGACTTCCAAGGTCAATGATTCAACAGCACTGGCCTAGCAGTCTTAAGTATATGCCTCATGGTAAATTGGGTAATTGCATCAGAAATGTGTCAAGACTCCAGGCAATACCCTCTGTCTAGCTCAGAGACAGGGCATTACTGTTGACGCCACAGATGCACTGGAGTATCTTTACCACCACTGTCAGCTACCAATCATCCACTGTGATCTGAAGCCAAGCAACATTATTGTTCAGTGGACATGAGCACACATGTTGGGGATTCAGCGTGTCAAAAATTCTTTCTGAAAATACAAGCAAAACTTTGCAATCAGTTCAATTGGAATTAGATGTTCCATCAGTTATGTTGATCCAAGTAACAGAGATCCATGCGTTGGTCTCATTATTTTTAGATCTTTCTTGATACATGGATGTGGTATCCTGACATACTCCCCCCTTTTCTTGTCACCTTGTTTGCATCAGGTTTTATAGTCAAACTGGTAAACCTCAAAATTGAAGGG
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| CDS seq | ATGCCGCCGCCGCGGGCGTCCGCCATCCTCTCCGCCGCCTGCAGGTCCAGCAGGACGCTCTTCGTTATTAGGAGGCTCGGCTTCCTTGGTTCCTGCACGCCAACTGTTCGTCAGAATGCCTCAGTGGAGCTTCCCGGGGCAGGCTTATATCCACGCTTTCACCAGAGCATTCTCCCAATTCACTGCGTTGTTGGATCTCTACGGCTTTGTCATTCTACCGCTTTGGATGGTTCCAAGGATGTCCATGTCAGCGAAATCGTTAAAATCCTCAAGTCTAGAGATGGCGACAGTGAGCTCGCCGAAGTTCTCAATCAATTTGCAGACGAGATGGATGAGGATGTTGTGCTAAAGGTGCTCCAGAAGCAGAGGTCCAATTGGAAAGTCGCACTATCTTTCTTCAAATGGGCAGCTGGTCTGCCCCAGTATAACCATGGGTCAAGGGCCTACACGGAGATGCTTGACATTCTTGGGAGGATGAAGAAGGTCAGGCTCATGAGACAACTGTTTGATGAGATTCCTGTGGAGAGCCGCCAGTCAGTGGTCACAAACAGGATGTTTGCTGTCCTGTTAAACCGGTATGCAGGCGCGCACAAGGTGCAGGAGGCGATAGATATGTTCTACAAGAGGAAGGATTATGGGTTTGAGCTTGACTTGGTTGGATTCCAGATACTTTTGATGTCTCTCTGTCGGTACAAGCATGTTGAGGAAGCAGAGGCCCTCTTTCTCCAAAAGAAAGATGAGTTCCCTCCTGTCATAAAGAGCTGGAACATCATTCTTAATGGTTGGTGTGTCAAGGGAAGCTTGGCAGACGCTAAAAGGGTTTGGAATGAGATAATTGCGTCTAAGCTTAAGCCTGACCTGTTCACCTATGGTACATTCATAAATTCGCTTACAAAATCTGGCAAACTTAGTACTGCAGTAAAACTATTTACAAGCATGTGGGAGAAAGGGATCAATCCTGATGTGGCAATTTGTAATTGTATCATCGATCAATTGTGCTTCAAGAAAAGGATTCCAGAAGCACTTGAGATTTTTGGTGAGATGAATGATCGTGGTTGTCAGGCCGATGTTGCTACCTACAACACTTTGATAAAACACTTCTGTAAGATTAATCGGATGGAGAAAGTCTATGAGCTTTTGGATGACATGGAGGTTAAGGGCGTCTCTCCAAACAATATGACATACTCCTACATTCTGAAGACGACAGAGAAACCCAAAGATGTTATTTCATTGATGCAGAGAATGGAGAAGTCTGGTTGCAGACTGGACTCTGATACATATAACTTAATATTGAACCTTTATGTCAGTTGGGATTATGAGAAAGGGGTTCAGCTAGTATGGGATGAAATGGAGAGGAATGGATCAGGCCCGGATCAACGATCATTTACTATAATGGTTCATGGACTCCATTCCCACGATAAACTGGATGAGGCTTTGCATTATTATAGAACGATGGAGTCGAGAGGGATGACACCAGAACCAAGGACGAAGCTATTGGTAAAAGCAATACGTATGAAGAAAGATGAACCTGCTACAGAAGAACCTCTTACCAGGAAGAATCTAAAATTGGATCCAATTTCAAGACTATTCCATGTTCGTAAATAG
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| Protein seq | MPPPRASAILSAACRSSRTLFVIRRLGFLGSCTPTVRQNASVELPGAGLYPRFHQSILPIHCVVGSLRLCHSTALDGSKDVHVSEIVKILKSRDGDSELAEVLNQFADEMDEDVVLKVLQKQRSNWKVALSFFKWAAGLPQYNHGSRAYTEMLDILGRMKKVRLMRQLFDEIPVESRQSVVTNRMFAVLLNRYAGAHKVQEAIDMFYKRKDYGFELDLVGFQILLMSLCRYKHVEEAEALFLQKKDEFPPVIKSWNIILNGWCVKGSLADAKRVWNEIIASKLKPDLFTYGTFINSLTKSGKLSTAVKLFTSMWEKGINPDVAICNCIIDQLCFKKRIPEALEIFGEMNDRGCQADVATYNTLIKHFCKINRMEKVYELLDDMEVKGVSPNNMTYSYILKTTEKPKDVISLMQRMEKSGCRLDSDTYNLILNLYVSWDYEKGVQLVWDEMERNGSGPDQRSFTIMVHGLHSHDKLDEALHYYRTMESRGMTPEPRTKLLVKAIRMKKDEPATEEPLTRKNLKLDPISRLFHVRK |
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| Function | Putative pentatricopeptide repeat-containing protein At3g15200 [UniProtKB/Swiss-Prot:Q9LIL5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g05860 | LOC_Os01g05860.1 | Chr01 | 2805584 | 2808152 | + | MSU_osa1r7 | ||
| CDS seq | ATGCCGCCGCCGCGGGCGTCCGCCATCCTCTCCGCCGCCTGCAGGTCCAGCAGGACGCTCTTCGTTATTAGGAGGCTCGGCTTCCTTGGTTCCTGCACGCCAACTGTTCGTCAGAATGCCTCAGTGGAGCTTCCCGGGGCAGGCTTATATCCACGCTTTCACCAGAGCATTCTCCCAATTCACTGCGTTGTTGGATCTCTACGGCTTTGTCATTCTACCGCTTTGGATGGTTCCAAGGATGTCCATGTCAGCGAAATCGTTAAAATCCTCAAGTCTAGAGATGGCGACAGTGAGCTCGCCGAAGTTCTCAATCAATTTGCAGACGAGATGGATGAGGATGTTGTGCTAAAGGTGCTCCAGAAGCAGAGGTCCAATTGGAAAGTCGCACTATCTTTCTTCAAATGGGCAGCTGGTCTGCCCCAGTATAACCATGGGTCAAGGGCCTACACGGAGATGCTTGACATTCTTGGGAGGATGAAGAAGGTCAGGCTCATGAGACAACTGTTTGATGAGATTCCTGTGGAGAGCCGCCAGTCAGTGGTCACAAACAGGATGTTTGCTGTCCTGTTAAACCGGTATGCAGGCGCGCACAAGGTGCAGGAGGCGATAGATATGTTCTACAAGAGGAAGGATTATGGGTTTGAGCTTGACTTGGTTGGATTCCAGATACTTTTGATGTCTCTCTGTCGGTACAAGCATGTTGAGGAAGCAGAGGCCCTCTTTCTCCAAAAGAAAGATGAGTTCCCTCCTGTCATAAAGAGCTGGAACATCATTCTTAATGGTTGGTGTGTCAAGGGAAGCTTGGCAGACGCTAAAAGGGTTTGGAATGAGATAATTGCGTCTAAGCTTAAGCCTGACCTGTTCACCTATGGTACATTCATAAATTCGCTTACAAAATCTGGCAAACTTAGTACTGCAGTAAAACTATTTACAAGCATGTGGGAGAAAGGGATCAATCCTGATGTGGCAATTTGTAATTGTATCATCGATCAATTGTGCTTCAAGAAAAGGATTCCAGAAGCACTTGAGATTTTTGGTGAGATGAATGATCGTGGTTGTCAGGCCGATGTTGCTACCTACAACACTTTGATAAAACACTTCTGTAAGATTAATCGGATGGAGAAAGTCTATGAGCTTTTGGATGACATGGAGGTTAAGGGCGTCTCTCCAAACAATATGACATACTCCTACATTCTGAAGACGACAGAGAAACCCAAAGATGTTATTTCATTGATGCAGAGAATGGAGAAGTCTGGTTGCAGACTGGACTCTGATACATATAACTTAATATTGAACCTTTATGTCAGTTGGGATTATGAGAAAGGGGTTCAGCTAGTATGGGATGAAATGGAGAGGAATGGATCAGGCCCGGATCAACGATCATTTACTATAATGGTTCATGGACTCCATTCCCACGATAAACTGGATGAGGCTTTGCATTATTATAGAACGATGGAGTCGAGAGGGATGACACCAGAACCAAGGACGAAGCTATTGGTAAAAGCAATACGTATGAAGAAAGATGAACCTGCTACAGAAGAACCTCTTACCAGGAAGAATCTAAAATTGGATCCAATTTCAAGACTATTCCATGTTCGTAAATAG
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| Protein seq | MPPPRASAILSAACRSSRTLFVIRRLGFLGSCTPTVRQNASVELPGAGLYPRFHQSILPIHCVVGSLRLCHSTALDGSKDVHVSEIVKILKSRDGDSELAEVLNQFADEMDEDVVLKVLQKQRSNWKVALSFFKWAAGLPQYNHGSRAYTEMLDILGRMKKVRLMRQLFDEIPVESRQSVVTNRMFAVLLNRYAGAHKVQEAIDMFYKRKDYGFELDLVGFQILLMSLCRYKHVEEAEALFLQKKDEFPPVIKSWNIILNGWCVKGSLADAKRVWNEIIASKLKPDLFTYGTFINSLTKSGKLSTAVKLFTSMWEKGINPDVAICNCIIDQLCFKKRIPEALEIFGEMNDRGCQADVATYNTLIKHFCKINRMEKVYELLDDMEVKGVSPNNMTYSYILKTTEKPKDVISLMQRMEKSGCRLDSDTYNLILNLYVSWDYEKGVQLVWDEMERNGSGPDQRSFTIMVHGLHSHDKLDEALHYYRTMESRGMTPEPRTKLLVKAIRMKKDEPATEEPLTRKNLKLDPISRLFHVRK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.270109 | 0.106942 | 0.130065 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0151900 | RBH | 0.399759 | 0.159137 | 0.505692 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g06000 | RBH | 0.395529 | 1.053836 | 0.235553 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0151900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0003760 | SBH | 0.337620 | 0.000000 | 0.482718 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0003580 | RBH | 0.0 | 0.0 | 0.400117 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0003760 | SBH | 0.162260 | 0.429489 | 0.828635 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0003410 | RBH | 0.124145 | 0.051743 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0003650 | RBH | 0.639093 | 3.130804 | 3.541887 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0047800 | RBH | 1.416184 | 2.0109735 | 1.8741555 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0003570 | RBH | 0.000000 | 0.000000 | 0.150482 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0049200 | RBH | 1.302843 | 2.2247205 | 5.090122 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0003370 | SBH | 0.031918 | 0.046660 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0003490 | SBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0003630 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0003630 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0003540 | RBH | 0.0 | 0.265276 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G003700 | RBH | 0.264726 | 0.750889 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0003550 | RBH | 0.000000 | 4.774212 | 0.000000 |
