Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g05050 | OGI:01007550 | 13/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:2372323-2374066 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTACAGGCTAACAAAATCCTTCAGCTTTCTCAACCATAGGAGGTATTCTTCGTTTTCCTTGTAGATCATGTACTCTTGCAAGAATTTTGCGGCCATGGGTGTGATCCCACGCAGCTCCAGGTACTTGTTCAACGCCTTTTGCAGACTTTCATCGAGGTCACTGCAGCAGACAGGGCAAAGCAAATTGCACATAAGAACTCGGCGATTAATAGTTAAGAATTAATTAGACTGCTCAATAATTTAGGTTTTGTTATCTTACTCGAAATCAGGACCCTCATCTGCGATCATTTCATTGTTGTCATCCTCTGGTGGCTGCATCAAGGACAAGGTGTCGATGACGATCTCTTCAGGATGGGCAGTGCAGGAGAATTCAAGGATCTGTCCATCTCCCTTTGAGATGGTGACGGTGAGAGGAATGCTGGATTTGGAGGGAACCTGAATCTCTTCGTACTCAGATTCATCGCTGGTCCATCTTTTCTCACATTTGACCTTGGCAGTGGCAGGCTCAGGTTCATCGTCACTCTCAAGGCTGTCCATGGAAACCTGAAGCTCAATCTTCTCACCATGGTAAGTTCTTGTGAGAGTAATTGCATTCGAGCCCTCTCCATAATTGATTTTAAAGAATTTAAAGATTTTAAAGGGGGAGTTATTAGGGATCTCCTTGGCCTGTATCAGTATGACAATGAAAATGAGGCCCTCAGTCAGACAGTCACAGCACATTGCTCTCAAGGAGAGCATGAAAATTGTTCAAAGCATTGAACTTATATATCATATATAATTGCGCAGAGTAATCAAACTGGCATGAATGTATAGTTCAGGAAAACAATCTGGTTATGCATAATCGCAGAGAAAGGTACAGGAACTAGATAGAATGATTAAAACTTACCAGCAGAGTTCTAAGCGGAGAAAAATTTCAAAATAAACGACTTTAGACATCAGCACTAATAGAACAAGAATACAGGAGACAAAAAAGTACTACAATTCATAAGGCACAATAGCAAGGCATATTGAATTCTTATGAGGAACGCACAAAACCTTACACAAGAATTAAACAAGGCACAACAACAATGATCAAGCACTAAAATAGTGCAGTAACTGCAAATAAATAACACCAAAATCTACTATAATCAAGAGAAGTTGAAGTTAATATGAGCATGAAAAAGTGGAATAGCAAATACTCCACATCATTGTACCAAATATTACCTCAATCTCAGCAAAGCAATTGCAATGCTGTAAACATGATTATGCTACCAATTACAGTATGAAAATTACTCCTTTTCTTTAAAAACAAAGTTAAATAACTAATCCCAATCCCTACTATAGCAACATAGAACATAACGCAAACAACATATGAAGTACCTAACGGCGACAGATTGCTTAAGTTTATTTCATGGTAATATATAATACGACTAAAATCAAAACAAACAAAGGGGATTCAATGATGTCAAAAGATAATTCTCTGATGATAGAGCAGAAGATCGAATAGCAGCATTTGATTTAGTGAGATTCAGGAGCTCGCGCGCGCACGCACCCGGTCTTGGTCGCCGTCGCTCTCCTCCTCGGCGTCGTTGATCGCGTTGTCGATGATCCTGACGAGCTCACTGTCGAAGGCGGGCTTCGTCAAGGGGGCCGACGACGAGAACGGCATCGAGCGGGGCTGCGGCCGCGCCGCCGCGGCGGCCAGCGGGCGGAGCAGGGGGAGGGTGGATGTGGCGGCGCGGCGAGCGGCGGCGAAGAGAGCCAT
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| CDS seq | ATGGCTCTCTTCGCCGCCGCTCGCCGCGCCGCCACATCCACCCTCCCCCTGCTCCGCCCGCTGGCCGCCGCGGCGGCGCGGCCGCAGCCCCGCTCGATGCCGTTCTCGTCGTCGGCCCCCTTGACGAAGCCCGCCTTCGACAGTGAGCTCGTCAGGATCATCGACAACGCGATCAACGACGCCGAGGAGGAGAGCGACGGCGACCAAGACCGGCATTGCAATTGCTTTGCTGAGATTGAGGCCAAGGAGATCCCTAATAACTCCCCCTTTAAAATCTTTAAATTCTTTAAAATCAATTATGGAGAGGGCTCGAATGCAATTACTCTCACAAGAACTTACCATGGTGAGAAGATTGAGCTTCAGGTTTCCATGGACAGCCTTGAGAGTGACGATGAACCTGAGCCTGCCACTGCCAAGGTCAAATGTGAGAAAAGATGGACCAGCGATGAATCTGAGTACGAAGAGATTCAGGTTCCCTCCAAATCCAGCATTCCTCTCACCGTCACCATCTCAAAGGGAGATGGACAGATCCTTGAATTCTCCTGCACTGCCCATCCTGAAGAGATCGTCATCGACACCTTGTCCTTGATGCAGCCACCAGAGGATGACAACAATGAAATGATCGCAGATGAGGGTCCTGATTTCGATGACCTCGATGAAAGTCTGCAAAAGGCGTTGAACAAGTACCTGGAGCTGCGTGGGATCACACCCATGGCCGCAAAATTCTTGCAAGAGTACATGATCTACAAGGAAAACGAAGAATACCTCCTATGGTTGAGAAAGCTGAAGGATTTTGTTAGCCTGTAA
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| Protein seq | MALFAAARRAATSTLPLLRPLAAAAARPQPRSMPFSSSAPLTKPAFDSELVRIIDNAINDAEEESDGDQDRHCNCFAEIEAKEIPNNSPFKIFKFFKINYGEGSNAITLTRTYHGEKIELQVSMDSLESDDEPEPATAKVKCEKRWTSDESEYEEIQVPSKSSIPLTVTISKGDGQILEFSCTAHPEEIVIDTLSLMQPPEDDNNEMIADEGPDFDDLDESLQKALNKYLELRGITPMAAKFLQEYMIYKENEEYLLWLRKLKDFVSL |
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| Function | Uncharacterized protein At2g39795, mitochondrial [UniProtKB/Swiss-Prot:Q8W487] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g05050 | LOC_Os01g05050.1 | Chr01 | 2372323 | 2374066 | - | MSU_osa1r7 | ||
| CDS seq | ATGGCTCTCTTCGCCGCCGCTCGCCGCGCCGCCACATCCACCCTCCCCCTGCTCCGCCCGCTGGCCGCCGCGGCGGCGCGGCCGCAGCCCCGCTCGATGCCGTTCTCGTCGTCGGCCCCCTTGACGAAGCCCGCCTTCGACAGTGAGCTCGTCAGGATCATCGACAACGCGATCAACGACGCCGAGGAGGAGAGCGACGGCGACCAAGACCGGCATTGCAATTGCTTTGCTGAGATTGAGGCCAAGGAGATCCCTAATAACTCCCCCTTTAAAATCTTTAAATTCTTTAAAATCAATTATGGAGAGGGCTCGAATGCAATTACTCTCACAAGAACTTACCATGGTGAGAAGATTGAGCTTCAGGTTTCCATGGACAGCCTTGAGAGTGACGATGAACCTGAGCCTGCCACTGCCAAGGTCAAATGTGAGAAAAGATGGACCAGCGATGAATCTGAGTACGAAGAGATTCAGGTTCCCTCCAAATCCAGCATTCCTCTCACCGTCACCATCTCAAAGGGAGATGGACAGATCCTTGAATTCTCCTGCACTGCCCATCCTGAAGAGATCGTCATCGACACCTTGTCCTTGATGCAGCCACCAGAGGATGACAACAATGAAATGATCGCAGATGAGGGTCCTGATTTCGATGACCTCGATGAAAGTCTGCAAAAGGCGTTGAACAAGTACCTGGAGCTGCGTGGGATCACACCCATGGCCGCAAAATTCTTGCAAGAGTACATGATCTACAAGGAAAACGAAGAATACCTCCTATGGTTGAGAAAGCTGAAGGATTTTGTTAGCCTGTAA
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| Protein seq | MALFAAARRAATSTLPLLRPLAAAAARPQPRSMPFSSSAPLTKPAFDSELVRIIDNAINDAEEESDGDQDRHCNCFAEIEAKEIPNNSPFKIFKFFKINYGEGSNAITLTRTYHGEKIELQVSMDSLESDDEPEPATAKVKCEKRWTSDESEYEEIQVPSKSSIPLTVTISKGDGQILEFSCTAHPEEIVIDTLSLMQPPEDDNNEMIADEGPDFDDLDESLQKALNKYLELRGITPMAAKFLQEYMIYKENEEYLLWLRKLKDFVSL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0143700 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0143700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0003010 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0002920 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0003040 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0002870 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0002990 | RBH | 0.0 | 0.0 | 1.431336 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0039800 | SBH | 10.0354385 | 13.267869 | 9.721514 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0002910 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0040500 | SBH | 6.6434445 | 8.0590805 | 31.8890565 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0002810 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0002960 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0003000 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0003050 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0002910 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G003100 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0002940 | RBH | 0.0 | 0.0 | 0.171821 |
