Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os01g02490 | OGI:01003510 | 11/16 | Nipponbare | IRGSP 1.0 | MSU | Chr01:804084-806932 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GAAGAAGTGAAATGATCATAATATATTGCATTGCAATAAGGAAATTTACAGAATTATTGTTTACATCTTGTAACAAAGAAATTTATAGGCATATCTTTTAAAAAGAAAAAAATACACATTTTAGCAGCAAGCTGCTAGATAATTGTGCAATACATCTATTCATATATCATCTTCGCAAATTCCTTCGCTTCTTTCTTAGATCTTGAAGTGGGCATTCAACTGTCAGAATTCAGCCACTGATCATCTGAATCTGCATAAGAAATTTATTATTAGCCTTCACAATTGCATTAAATAATATTGACAATATTCTTCAACATATAAAATGCTACTATGACCATACATAAAACAACATAGCCATATTGTCATTTTCCTTAAAATGATGATCTGTAACCACTTTACTAAACTAGTTCAAAGGCAAAAAAAAAAGTTGCTCACAGATTCATCTAGCATTAAACTGAGGCCAATTGCCACCTGAAAAATAGATTAGGAGTACTAATGTTCATCAAGATTATCAATGATCCTGTCAACAGTATAATTATCTGATAGTTTCATCCTTTATATCTGATGAAACTGGGGAATTTAAATTGGTTTTTGGACAGATCATTTTATTACTAAGCTTCATGTTCTTTCTCCTCTGTTCTGTCAACCAAAAACAATGTGGAACTAACCTTTGATACCATTGCAACCCCAGTGTGGTAGTGTCCCATTCATCTTAAATATATTCTTGCAAACCTGCTTCAGAGGGGAAAAAAGACGACGTAGCATCAAAGTATCAAATAATGTATTGAAGCAAGAATCATTAGTATTTAAGTCCATCTAAAGCAAACTATCTAACGCCATGTTTGTGGAGTATTGACTGTACACATCATGCTTCCATGCTTCCTCCAAACGTGCCTACACACCACAATAGTTTCCTACACACCACAATAGTTTCCTCCATACTACAGTAGAACGCCTGTAGTATTTTCTTTAAATGTATCAGCAAGTGTAATACAAGATTTTGGAAAAACACAGTGCTCAGGAAAATAATTTTCTGTTGAAAATGCAGGAAAATAGTTCGAACGGCACATTTCTTAACATTGAAAGCTACAGTTGACTGAGATATACAAATCGGATATCAGTATCCACTGCTACCACCATATAGAAGAATAAATGATTACTACTCCTACAATGGCAATAATACATTGGGTAGCATATCAAACTTTGGAGCCACACACCATAGAACAAAAAGATATAATACTCTATATATGCGCTGGATATGTCAACAGTTAAACATCAAATATTTTTGCAACATCATATATTTTTGCAGCAGGAACTTCCCAATATGCATGTGAGCATGCACTTCTGAAAGTTCTTACTACTCCTACCAATGACAGTACAACTTCTATCAATCATCTGTGAAGGAAAATAAAAAGTAATTATGACCTTCTTTTCCTATATAGCATTTCTCCAATAAGTTGGAAAATACCCATAGAATAATTATGACTAACCAGAGAAAGCTGCAGCCATAATTACCTTGCACCAAGTGATGTGCTCTGTGAGTTCTTCTCCTGTGGTTCCATCTTTACAATCTCGTAAGCAGGCACACATAGTGATATAGAGTTGCTTTGCCTCATTTTCTACACTTAAAGCTGCAGTGTTAGTTTCTTGTATCAGAACTTCATTAGACAATAATATGTTTGATTTACTTAACAAGGCATGGAAGAAAATAGATGACATGCAGAATAGTACCTTAAGATTTCGTTCCCAAAGTTTAGACATAGCACATCTTATTTTGAACTTCCATGCACAAACCACAACATGCTGATCCAAAATATTGTTCAAAGCTAGTGTTTTAATCAAACAAGTTGACATTTGTTTGCAATAAGAAGTCAACTTGTATTATATTGGTTTTGCTCTTTTGGCCCTCTGTTGTGAGTTGTGACCTTTAAGTAATGATCAGGCATAACTGGATTTTATCGAACAAATCGGTCCATATATACTGCCTGCTTGAAAGAGTCAACAACTTAATCCCCTTGAAAATACTGGCTAGCTGCATAAAAAGTTGTTCTGTTGATGGTGATCACCCAATGTGTTCATGAAACTGAAAGCAATCAAGCACTACTAATTCACAGATTTAGGTTTTTTTTTTTATGAATGATCATGTTGGCATAAGAATTTTGCAATTTCGCGTGATCAGAAAAAGTATGGAGAGATGTGAAGATAACATCAATAATCTGTCTAAGGACAAAATTATGCTTTTACGGAGTTGGCATGCAACAGTACACAGTGAAGCTTTTCATCAAACACATGATGTGCATATGTGTGATAGAGAACAAGCCATCCACTCCTATTAAAGAAGAATTTAGTGAGACAGTACACAAACCACAAAAAGGATTCCTTTGGGTTCTTGTGATGTGCTCACCATGCGTACACAAGAAGGATGCAGTGATCAGATGTGTTTGGACTCTCCAGCAATCAGATGTGTCTCGATCTTGCATCCTGCAAATGCCAGGAAGAAAGGGATGGGTGAGACAGGCTAGATAGATGGCCAGTTTTGGGGAGAGCAAGCATGTGCGGCTGAGCAATTTACTCCTTCTCGCCCCCTCCTCCGAAGCCGCCGGCGTCTGTAGTCCCTCGACATCGCTCACGCGGCTCACCTGACGAGATCGATGCCGCTCCACGGACGGAAACTCCCCTTTCTCCCCTGCCCACCTGCCACCGTAGGGGCTGCGACGAGCCGACTCCCCTTTCTTGTCGCCGGGATCTGAGTAGTTGATAACACGAGATTGCAGCAGCCAGCAGATGGGAAGCACAGACCTCGGTTGCTCGGGTGATGAGTCGTGGGATGTTGGGTTCCTCCTGGAAAT
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| CDS seq | ATGTCAACTTGTTTGATTAAAACACTAGCTTTGAACAATATTTTGGATCAGCATGTTGTGGTTTGTGCATGGAAGTTCAAAATAAGATGTGCTATGTCTAAACTTTGGGAACGAAATCTTAAGGTACTATTCTGCATGTCATCTATTTTCTTCCATGCCTTGTTAAGTAAATCAAACATATTATTGTCTAATGAAGTTCTGATACAAGAAACTAACACTGCAGCTTTAAGTGTAGAAAATGAGGCAAAGCAACTCTATATCACTATGTGTGCCTGCTTACGAGATTGTAAAGATGGAACCACAGGAGAAGAACTCACAGAGCACATCACTTGGTGCAAGGTTTGCAAGAATATATTTAAGATGAATGGGACACTACCACACTGGGGTTGCAATGGTATCAAAGATTCAGATGATCAGTGGCTGAATTCTGACAGTTGA
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| Protein seq | MSTCLIKTLALNNILDQHVVVCAWKFKIRCAMSKLWERNLKVLFCMSSIFFHALLSKSNILLSNEVLIQETNTAALSVENEAKQLYITMCACLRDCKDGTTGEELTEHITWCKVCKNIFKMNGTLPHWGCNGIKDSDDQWLNSDS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g02490 | LOC_Os01g02490.1 | Chr01 | 804084 | 806932 | - | MSU_osa1r7 | ||
| CDS seq | ATGTCAACTTGTTTGATTAAAACACTAGCTTTGAACAATATTTTGGATCAGCATGTTGTGGTTTGTGCATGGAAGTTCAAAATAAGATGTGCTATGTCTAAACTTTGGGAACGAAATCTTAAGGTACTATTCTGCATGTCATCTATTTTCTTCCATGCCTTGTTAAGTAAATCAAACATATTATTGTCTAATGAAGTTCTGATACAAGAAACTAACACTGCAGCTTTAAGTGTAGAAAATGAGGCAAAGCAACTCTATATCACTATGTGTGCCTGCTTACGAGATTGTAAAGATGGAACCACAGGAGAAGAACTCACAGAGCACATCACTTGGTGCAAGGTTTGCAAGAATATATTTAAGATGAATGGGACACTACCACACTGGGGTTGCAATGGTATCAAAGATTCAGATGATCAGTGGCTGAATTCTGACAGTTGA
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| Protein seq | MSTCLIKTLALNNILDQHVVVCAWKFKIRCAMSKLWERNLKVLFCMSSIFFHALLSKSNILLSNEVLIQETNTAALSVENEAKQLYITMCACLRDCKDGTTGEELTEHITWCKVCKNIFKMNGTLPHWGCNGIKDSDDQWLNSDS |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os01g02490 | LOC_Os01g02490.2 | Chr01 | 804084 | 806932 | - | MSU_osa1r7 | ||
| CDS seq | ATGCAAGATCGAGACACATCTGATTGCTGGAGAGTCCAAACACATCTGATCACTGCATCCTTCTTGTGTACGCATGAAAATGAGGCAAAGCAACTCTATATCACTATGTGTGCCTGCTTACGAGATTGTAAAGATGGAACCACAGGAGAAGAACTCACAGAGCACATCACTTGGTGCAAGGTTTGCAAGAATATATTTAAGATGAATGGGACACTACCACACTGGGGTTGCAATGGTATCAAAGATTCAGATGATCAGTGGCTGAATTCTGACAGTTGA
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| Protein seq | MQDRDTSDCWRVQTHLITASFLCTHENEAKQLYITMCACLRDCKDGTTGEELTEHITWCKVCKNIFKMNGTLPHWGCNGIKDSDDQWLNSDS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.116294 | 0.000000 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0115100 | RBH | 0.173563 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0115100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0001160 | RBH | 0.571432 | 0.0 | 3.771786 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0001180 | RBH | 1.261246 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0014500 | RBH | 0.374761 | 0.3322605 | 0.1449055 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0001100 | RBH | 0.0 | 0.000000 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0014800 | RBH | 0.0572025 | 0 | 0.1841755 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0001200 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0001110 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0001140 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G001180 | RBH | 0.000000 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0001100 | RBH | 0.0 | 0.0 | 0.0 |
