Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: XL628S_127742_DEL1139870

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

DEL

Os XI-adm: Xiangling628S | XL628S

Os XI-1B2: PR 106 | Os127742RS1

Chr11

22934135

22946724

SV Length:

Query Start:

Query End:

Allele sv Count:

17028 bp

13260692

13277719

10 There is no gene in this region.

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
XL628S_117425_DEL1153440	Chr11	22934135	22946722	27881261	27893847	12587
XL628S_117534_DEL1131930	Chr11	22934135	22946724	12608383	12625423	17041
XL628S_127742_DEL1139870	Chr11	22934135	22946724	13260692	13277719	17028
XL628S_J4155_DEL1107950	Chr11	22934135	22946722	24987897	25000421	12525
XL628S_J4155S_DEL1103180	Chr11	22934135	22946722	25355109	25367681	12573
XL628S_R527_DEL1143980	Chr11	22934135	22946724	13307488	13324515	17028
XL628S_R9311_DEL1142130	Chr11	22934135	22946724	13190760	13207757	16998
XL628S_Y3551_DEL1142480	Chr11	22934135	22946724	13085082	13102101	17020
XL628S_YX1_DEL1133620	Chr11	22934135	22946724	12783428	12800447	17020
XL628S_MH63RS3_DEL1144210	Chr11	22934135	22946724	13292253	13309280	17028

>XL628S_127742_DEL1139870
cgtgtcacgcccagaaattcccgaatagaattccaggcagaatgtgcattaaaatccccgtccaggaccagccggggtacacaaacgacaatgttgacatacagatccacgtcttacaaacatcataagagtcttacagaaatgcagcggaaaacaaaagaaactggagctaagccttgactaaactgcagcaggaacaccactccacaggcatcctcgacggcacggacgaagcctactcctcggagaaaccttcatctgacccgtactcaaactctggggttgggggaaaagtagagcaagactgagtactacccactgtactcagcaagtcataccggaatagaggtatgatgcagggaatcatcaaagaaaagctaaagtggttcatttgcataaagcgagcattgataaacagagattgaaagatttaaacagttgtaataagtaattaagcagtattaatcatccactgtccaacgctacaccacgttgcaacaggcccaaccatccacctaaactatccaaattaaaggattacactaaagtgagactaatcacggtgaatctggttgaccgcccataaccgtgggcacggctattcgaatagttttactctgatcagaggtgtacaactgtacccacaagacacagccccacgacacgtttccgtgcgccgacatgccaccacgacataccggaaagaggccgtgacaggacccttcgcataaccccctctagccaagcacaccacacctcaggtttcacccccgtccccagcaggcgacgggcagtcccctctcgtgcctaggtgaatccggaagcgacagaggccgtcgcagggcccgccccgctccatcacgcccacccttgcctggatgcgtcgactagaggaaagctacactacaagcccagccgttgcccacgctggcttgtggtaagtacgataagttcttccagggcatcccgcgaaccggtccttaactgccatgggtgcgaccagcaaaaccatgcacccacagcccaccatgtggttcattttaattaaccaacaccagagcggtggtactaaaccaacattatcatatagacttatagtttaggttttatatgagattccccattgtgtgctagttgaactaggcatggctaagcaattcctagtcctaactctaatcatgttataacccaagctaacaaaggagcatggtatcaaaattatggctgtaacagtaggtaaccatcccctagtgatattataaaacaatgcagtatttgaaaggaaacagtagagcatttgcaatataggagcaatatgttcaagtgacaagcatgacttgccttgctctgctgctggagggacttcggcgactatctcgaagtacaccggagcgtcggagggatcggaatctagcgacatacaaagcaaacattgcaaacaggctataagactactgaaacagagaacaaaaccatttttaatggattctacacatttttcttgatttactgagacttgaatggacttaaacggagctcggatgaattagctatgaattttagaagattcactgtgtttattactataaaagaaatccttaaataaattattgcgcaataaactccagggctgacgtcagcgcggggcggcgcggcgccgacaagcggggcccaccggtcagcgacacggggagagagagaaggggcggcggctcgcgggcccaccggtcagcggcacgggggaaaaggatggggcggcggcgccacgtggcggccgaaccgacggccccgatctacccaagggtagatcggacggcggcgggacctcgcggccggggcgcgcgggcgcggcgcgagacggcggcgaccatggcgccggcggcgcggcgctcacacggcggcgcgcgcatgcggcagcggcgcaaggcgacgatcgacggcgaccgaccggcggcggagagcggcggctagaggaggagcggcggctacgcggctaagcggcgacgcggcggctaagcggtgcgggagagagggaaaacgaggagggggacctcaccgacaccgatcgacgacggcgggcgacggaggatgacggcgacggcgggacgagctccggagccccctaacgaacaaaaggagaggggttagagggagcgaggagagtgcgagagagcgagagcgccggccgaaggcggcggccatggcgccactcaccggcacacgacggggacggctctccggcgacggacctcgacgaaagaggggtggacggggtagatcttgaccccgcgaacctaacggcggcgtcggcgcaagacggcggcgagcctagcggcggctagcggcggccggagtagcaaaagcggcggcggcgggtggttgcacggcgcggaggcgatggggagcacgggagggatcggcgaaatggggaaaaagagagagagggcggcggcgatgcttaaaaagggggagaggggtccggacgtggccgggagcggcgggaatcgccggccgacgtgggggagtggggaggagagagaggcgggattcgtttttcgaatcccggccatctcgggcgcgggcgcgaatgggagagagaggggaaagggcgcgggggatgcggcgcacgcgcgggcgtggccgacgtggcccgggagcggcggagacgtgggcacaacggccgttacggcgcggcggcgcgggcgggatcggcgggaggtgggggaaggacccgacaggtgggccccacctgtcggcgaccccgagagaggaggcgggcggccggctgtcgggctgggcctcggcctgcggccggcccagcaaggaggagggggaggaaagagaggggaaatgggccgacggcccatttaaccaaaaggaggaaaacgagggaaaaagaaaaagaaaaaggaaaaaggattttccttggaattaaaaattgcacttgctcaattttaattggttaaaattatttctagagctctgaaaattccactaaaaatcctgttaatgaatttcgacatgtagaactcaagaaaaattccacatgtcaattccgattattatttgcattattttcttagggttttctcctgatttctccagcattttcttagggtcttttataaattacaatttttggcttaggaggagaactacagggtgtgacaaacctacccccccttaaacggaatctcggccccgagattcggaggagctggtgaagaggtccgggtgggcggctttcaactcatcttccctttcccaggttgcttcctcttcggaatgatgactccactgaactcggcaaaacctggtgaccttgtttctggtcctcctttcgctgatatcaagtatgcgaaccgtcttctccacataggtcaggtcctcctggatatcgatgtgttccgaatcagcctgttcctcaggtacccttaagcacttctttagttgagaaacgtggaacacgtcatggatgccgatcatgttggatggaagttctagctgataagcaacttctccccttcgttccaaaattttgtatggtcccacgaagcgtggtgccaacttgcctttcgtctgaaaacggtgtactccccggagcggagtgacacgaaggtacacgtaatctcctgcctcgaaagtgagctcccttcgacggttatccgcgtagctcttctgtcgagactgggcaatcctcaacctttccctgatgattctgactttctcttctgcttccgctaatacttctgttccgaacagttgacgttcgcccgtctgatcccagaagagaggtgtgcggcacttccggccgtataacgcttcgaacggtgccatctgtagactggcctggtagctgttgttgtacgagaattccgcatatggtaagcttttatcccaagccccaccaaaatcaagagcgcaagctctcagcatatcctccaagatttgattgactcgctcggtctgaccatcagtttgcgggtgataggccgtgctgaaatttaaacgggtccccaactcttcctgcagtttctgccaaaattttgaggtgaactgactacctcggtcggatactatcttcctgggtaccccatgcaaacacatgatccttgcgaggtacaactctgccaatctctttcccgtataggtggtatgtactggtataaagtgagccaccttggtgagtcgatccacgactacccagattgaatcatgtcccgatgatgtccggggcagtcccgtgataaagtccattccaatctcctcccacttccattccgggatttgaagaggttggagtaaacctgctggtctttggtgctctgccttcacttgttggcaaacatcgcagagtgcgacgaattcagctatttctctcctcatgctgacccaccaaaacttttctttgaggtcttgatacattttagtactgcctgggtgaatggagtactgggtctgatgagcttcggtgagtatcagatccttcaattccttgtcgtccggtacacacaatctttctcccatccagattgtgccatgctcatcctcaaggaaatcccgagcctttccgactctcatgttctttttcagttctgctatttccggatcatttacttgagcggctctaacttgatccacgagcgtaggccgtgcctccagagcggctacaaacccgtgttcaacaactcccatgttgagatgttcaagctcctgccgcaattcctcacacatgctctcgatgcatagagcagtgcagtaacttttccggcttaaagcgtctgccaccacattggccttacccgggtggtagtgaatactcatgtcatagtctttgattagctccaaccatcttcgttgtcgaaggtttaggtccggttgggtgacttttatggtccgtatatacttcgcagcggttgccgatcagatagtgcctccagattttcaaagcatgaaccactgctgccaattctaagtcatgagttggataatttccttcg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