Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: WSSM_Y3551_DEL0128430

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

DEL

Chr01

43095720

43095955

SV Length:

Query Start:

Query End:

Allele sv Count:

237 bp

37968484

37968720

14

Gene_id	Chromosome	Start	End
OsY3551G0101406600.01	Chr01	37960282	37969958

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
WSSM_125827_DEL0133610	Chr01	43095720	43095955	38390604	38390840	237
WSSM_127518_DEL0137610	Chr01	43095720	43095955	38360544	38360780	237
WSSM_127742_DEL0124390	Chr01	43095720	43095955	37861026	37861262	237
WSSM_132424_DEL0135510	Chr01	43095720	43095955	37981632	37981868	237
WSSM_FH838_DEL0130470	Chr01	43095720	43095955	38351261	38351497	237
WSSM_G630_DEL0129950	Chr01	43095720	43095955	38274017	38274253	237
WSSM_IR64_DEL0124800	Chr01	43095720	43095955	37907637	37907873	237
WSSM_J4155_DEL0128520	Chr01	43095720	43095955	38145236	38145472	237
WSSM_J4155S_DEL0130730	Chr01	43095720	43095955	38621817	38622053	237
WSSM_Lemont_DEL0158270	Chr01	43095720	43095955	37755494	37755730	237
WSSM_R527_DEL0128820	Chr01	43095720	43095955	37929114	37929350	237
WSSM_Y3551_DEL0128430	Chr01	43095720	43095955	37968484	37968720	237
WSSM_Y58S_DEL0133700	Chr01	43095720	43095955	37082305	37082541	237
WSSM_MH63RS3_DEL0130320	Chr01	43095720	43095955	38545514	38545750	237

>WSSM_Y3551_DEL0128430
GTTCGGCTGAGAGCGTTCCCAGCGCGCACAGTAAACACGGAAAACGGAGCGGTCATTAGCGCGTGATTAATTAAGTATTAGCTAATTTTTTTTAAAAAAATGGATTAATTTGATTTTTTTTAAACAACTTTTGTATAGAAACTTTTTGCAAAAAAATGCACCGTGTAGTAGTTTGAAAAGCGTGCGCGGACGAAAAGTTACTGTGCACGCCGGGAAAACAGCTGCCGAACACAGCCT