Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: Tumba_Y3551_OTH0129600

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

OTH

Chr01

37443539

37443610

SV Length:

Query Start:

Query End:

Allele sv Count:

290 bp

37968429

37968718

20

Gene_id	Chromosome	Start	End
OsY3551G0101406600.01	Chr01	37960282	37969958

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
Tumba_125827_OTH0128820	Chr01	37443539	37443610	38390549	38390838	290
Tumba_127518_OTH0126560	Chr01	37443539	37443610	38360489	38360778	290
Tumba_127564_OTH0118250	Chr01	37443539	37443610	38305725	38306014	290
Tumba_127742_OTH0130030	Chr01	37443539	37443610	37860971	37861260	290
Tumba_132424_OTH0130700	Chr01	37443539	37443610	37981577	37981866	290
Tumba_D62_OTH0134990	Chr01	37443539	37443610	37793267	37793556	290
Tumba_FH838_OTH0130070	Chr01	37443539	37443610	38351206	38351495	290
Tumba_G630_OTH0129450	Chr01	37443539	37443610	38273962	38274251	290
Tumba_HZ_OTH0131010	Chr01	37443539	37443610	38339563	38339852	290
Tumba_IR64_OTH0134440	Chr01	37443539	37443610	37907582	37907871	290
Tumba_J4155_OTH0130860	Chr01	37443539	37443610	38145181	38145470	290
Tumba_J4155S_OTH0131880	Chr01	37443539	37443610	38621762	38622051	290
Tumba_Lemont_OTH0152530	Chr01	37443539	37443610	37755439	37755728	290
Tumba_R498_OTH0128410	Chr01	37443539	37443610	37725980	37726269	290
Tumba_R527_OTH0129570	Chr01	37443539	37443610	37929059	37929348	290
Tumba_S548_OTH0129980	Chr01	37443539	37443610	37609488	37609777	290
Tumba_WSSM_OTH0129590	Chr01	37443539	37443610	37858337	37858626	290
Tumba_Y3551_OTH0129600	Chr01	37443539	37443610	37968429	37968718	290
Tumba_Y58S_OTH0136060	Chr01	37443539	37443610	37082250	37082539	290
Tumba_MH63RS3_OTH0130090	Chr01	37443539	37443610	38545459	38545748	290

>Tumba_Y3551_OTH0129600
AAGAAGATGAGATAAGAGATGAGCCACACGCCAATATCTAGTTGGATATGCAGGAGTTCGGCTGAGAGCGTTCCCAGCGCGCACAGTAAACACGGAAAACGGAGCGGTCATTAGCGCGTGATTAATTAAGTATTAGCTAATTTTTTTTAAAAAAATGGATTAATTTGATTTTTTTTAAACAACTTTTGTATAGAAACTTTTTGCAAAAAAATGCACCGTGTAGTAGTTTGAAAAGCGTGCGCGGACGAAAAGTTACTGTGCACGCCGGGAAAACAGCTGCCGAACACAGC