Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: S548_Y3551_DEL0126360

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

DEL

Chr01

42645968

42646203

SV Length:

Query Start:

Query End:

Allele sv Count:

237 bp

37968484

37968720

14

Gene_id	Chromosome	Start	End
OsY3551G0101406600.01	Chr01	37960282	37969958

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
S548_125827_DEL0133110	Chr01	42645968	42646203	38390604	38390840	237
S548_127518_DEL0137500	Chr01	42645968	42646203	38360544	38360780	237
S548_127742_DEL0120200	Chr01	42645968	42646203	37861026	37861262	237
S548_132424_DEL0134350	Chr01	42645968	42646203	37981632	37981868	237
S548_FH838_DEL0126470	Chr01	42645968	42646203	38351261	38351497	237
S548_G630_DEL0126750	Chr01	42645968	42646203	38274017	38274253	237
S548_IR64_DEL0121610	Chr01	42645968	42646203	37907637	37907873	237
S548_J4155_DEL0125960	Chr01	42645968	42646203	38145236	38145472	237
S548_J4155S_DEL0127070	Chr01	42645968	42646203	38621817	38622053	237
S548_Lemont_DEL0156700	Chr01	42645968	42646203	37755494	37755730	237
S548_R527_DEL0124970	Chr01	42645968	42646203	37929114	37929350	237
S548_Y3551_DEL0126360	Chr01	42645968	42646203	37968484	37968720	237
S548_Y58S_DEL0129660	Chr01	42645968	42646203	37082305	37082541	237
S548_MH63RS3_DEL0126870	Chr01	42645968	42646203	38545514	38545750	237

>S548_Y3551_DEL0126360
GTTCGGCTGAGAGCGTTCCCAGCGCGCACAGTAAACACGGAAAACGGAGCGGTCATTAGCGCGTGATTAATTAAGTATTAGCTAATTTTTTTTAAAAAAATGGATTAATTTGATTTTTTTTAAACAACTTTTGTATAGAAACTTTTTGCAAAAAAATGCACCGTGTAGTAGTTTGAAAAGCGTGCGCGGACGAAAAGTTACTGTGCACGCCGGGAAAACAGCTGCCGAACACAGCCT