Variation ID: OglaRS2_MH63RS3_OTH0539720

Variant Type:
Ref Genome:
Query Genome:
Chromosome:
Ref Start:
Ref End:
OTH
Os O.glaberrima: OglaRS2 | OglaRS2
Os XI-adm: Minghui 63 | MH63RS3
Chr05
23731836
23732117
SV Length:
Query Start:
Query End:
Allele sv Count:
276 bp
28081362
28081637
49
Gene_id Chromosome Start End
OsMH63_05G0420200 Chr05 28080631 28085119
SV_id Chromosome ref_start ref_end query_start query_end length
OglaRS2_02428_OTH0537410 Chr05 23731836 23732117 27117920 27118195 276
OglaRS2_117425_OTH0539100 Chr05 23731836 23732117 27620775 27621050 276
OglaRS2_117534_OTH0538520 Chr05 23731836 23732117 27956494 27956769 276
OglaRS2_125619_OTH0540040 Chr05 23731836 23732117 27746137 27746412 276
OglaRS2_125827_OTH0540030 Chr05 23731836 23732117 27877544 27877819 276
OglaRS2_127518_OTH0539190 Chr05 23731836 23732117 28097635 28097910 276
OglaRS2_127564_OTH0539640 Chr05 23731836 23732117 28108830 28109105 276
OglaRS2_127652_OTH0538210 Chr05 23731836 23732117 27801131 27801406 276
OglaRS2_127742_OTH0538590 Chr05 23731836 23732117 27894376 27894651 276
OglaRS2_128077_OTH0538710 Chr05 23731836 23732117 27438580 27438855 276
OglaRS2_132278_OTH0538010 Chr05 23731836 23732117 27460273 27460548 276
OglaRS2_132424_OTH0539440 Chr05 23731836 23732117 27859202 27859477 276
OglaRS2_Azucena_OTH0538590 Chr05 23731836 23732117 28028149 28028424 276
OglaRS2_Basmati1_OTH0538300 Chr05 23731836 23732117 27733822 27734097 276
OglaRS2_CN1_OTH0538880 Chr05 23731836 23732117 27589980 27590255 276
OglaRS2_D62_OTH0537760 Chr05 23731836 23732117 27886551 27886826 276
OglaRS2_DG_OTH0538520 Chr05 23731836 23732117 27892076 27892351 276
OglaRS2_DHX2_OTH0537920 Chr05 23731836 23732117 26973602 26973888 287
OglaRS2_FH838_OTH0539880 Chr05 23731836 23732117 28305441 28305716 276
OglaRS2_FS32_OTH0538430 Chr05 23731836 23732117 27642201 27642476 276
OglaRS2_G46_OTH0539100 Chr05 23731836 23732117 27697398 27697673 276
OglaRS2_G630_OTH0540100 Chr05 23731836 23732117 28129110 28129385 276
OglaRS2_G8_OTH0537940 Chr05 23731836 23732117 27196604 27196879 276
OglaRS2_HZ_OTH0538410 Chr05 23731836 23732117 27934242 27934517 276
OglaRS2_II32_OTH0538600 Chr05 23731836 23732117 28071585 28071860 276
OglaRS2_IR64_OTH0538550 Chr05 23731836 23732117 28085677 28085952 276
OglaRS2_J4155_OTH0538840 Chr05 23731836 23732117 27965862 27966137 276
OglaRS2_J4155S_OTH0539020 Chr05 23731836 23732117 28208891 28209166 276
OglaRS2_Kosh_OTH0537730 Chr05 23731836 23732117 27019138 27019424 287
OglaRS2_KY131_OTH0537740 Chr05 23731836 23732117 27365503 27365789 287
OglaRS2_Lemont_OTH0539920 Chr05 23731836 23732117 27898185 27898460 276
OglaRS2_LJ_OTH0538680 Chr05 23731836 23732117 27758652 27758938 287
OglaRS2_LK638S_OTH0538650 Chr05 23731836 23732117 28008500 28008775 276
OglaRS2_NamRoo_OTH0538540 Chr05 23731836 23732117 27835815 27836090 276
OglaRS2_Nipponbare_OTH0537290 Chr05 23731836 23732117 26985049 26985335 287
OglaRS2_R498_OTH0539230 Chr05 23731836 23732117 28347936 28348211 276
OglaRS2_R527_OTH0536940 Chr05 23731836 23732117 28058804 28059079 276
OglaRS2_R9311_OTH0538770 Chr05 23731836 23732117 27739036 27739311 276
OglaRS2_S548_OTH0539440 Chr05 23731836 23732117 28281908 28282183 276
OglaRS2_TM_OTH0539120 Chr05 23731836 23732117 28620306 28620581 276
OglaRS2_Tumba_OTH0539360 Chr05 23731836 23732117 28408124 28408399 276
OglaRS2_WSSM_OTH0538020 Chr05 23731836 23732117 27952664 27952939 276
OglaRS2_XL628S_OTH0538700 Chr05 23731836 23732117 27996586 27996861 276
OglaRS2_Y3551_OTH0538600 Chr05 23731836 23732117 27816886 27817161 276
OglaRS2_Y58S_OTH0538250 Chr05 23731836 23732117 27541599 27541874 276
OglaRS2_YX1_OTH0538550 Chr05 23731836 23732117 27660413 27660688 276
OglaRS2_ZH11_OTH0537660 Chr05 23731836 23732117 27055142 27055428 287
OglaRS2_ZS97RS3_OTH0538930 Chr05 23731836 23732117 27721320 27721595 276
OglaRS2_MH63RS3_OTH0539720 Chr05 23731836 23732117 28081362 28081637 276

>OglaRS2_MH63RS3_OTH0539720
GTGTCCAGGCGCGCGACGTACTATCTAATTTAAGCGCGCGTGCGCGCACACGAGCGATCCTTCTCGAAAGTTGTTATAAAACCGACGGTAACTAAACACGAAAGAACACCATAAGAGACACGTTATAGGTTAGGCAGGTTTAGCCGAGATCTACATCCTGAGATACCGATTACGAAAAGCTTACTTTTGATCTAGCGTAATTATAGTGCGTCTGTGTATTTACGATACTCGATCAGCTAGCTGGATTAAGGATCGTAAATACCAGACACACTATAT

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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