Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_05G0420200 | OGI:05073120 | 50/50 | Minghui 63 | MH63RS3 | HZAU | Chr05:28080632-28085119 | ||||||||
| Gene Symbol | OsMYB86-L2,RLM1 | ||||||||||
| Mutant | - | ||||||||||
| Stuctural Variations | |||||||||||
| DNA seq | ATGATTGCAATTTACAGCAGGACAGCAGGTACGCACGTTGCTTTCTCATCACATCTTTTTCTTCATTTTACTTTCTCATCATTTGTTATAGTAGTACTTTTTACGTTCTAAAATGTAACTATTTCTAACATTGTACTTTTTACGTTCTAAAATGTAACTATTTCTAACACATTTAGCTTGTCCCCAACTGAAACTATTCTATCTATCCCTTCCTCTCAACAACCATTCTCCATTTAATTAACTCACCCATTTCTTTTTCTCAATCAATGATAGTATTTTTCCAATTATTTCTATCAACTTTTTAATACTTCGATCTACCTAAGATTAAAAGTACTATATTTTGGAACATACTCCTGGACAATCGCGAGGACGTGCGCCAAAGCCTGAATTTACATACAATTCCATCGACATGTGTTTGAATTAATTCCTTCTCTGAACACGGCAATAAGCCAGGGATATTTTTTCTCTGTCGGTACGACAGATTATAAAAGACAGCAAGGGTAATGCTCAGAGAATGAACAGCTGATCAGAATTCAGACACAGCTCGATCGCCCATTGGTTTCTGGTCGATCTCCCAAATCGCGCGTCATATCGATCATTTCCACTGCTGATTACTACTGGAGATTTGATCAGCTGTGGTGTGAGCAGGCAAGATGTTAAATCCGTCGCCGTCGTCGCCGCGTGCCTCCACGACGCAAACAGAAAACGATCGCCTACGCAGCCTGGAGCAGTGTCCAGGCGCGCGACGTACTATCTAATTTAAGCGCGCGTGCGCGCACACGAGCGATCCTTCTCGAAAGTTGTTATAAAACCGACGGTAACTAAACACGAAAGAACACCATAAGAGACACGTTATAGGTTAGGCAGGTTTAGCCGAGATCTACATCCTGAGATACCGATTACGAAAAGCTTACTTTTGATCTAGCGTAATTATAGTGCGTCTGTGTATTTACGATACTCGATCAGCTAGCTGGATTAAGGATCGTAAATACCAGACACACTATATCTATTATCATCTTTAAGTTTTAATTTATAATACATTTTACACATATTTAACGCAAACGTTATAAAATATGGCTTGGCATGGCAGGGTGGCTCCACCTGTCGGCGGGAAAGGAGGGGGGGGGGGGGGGGGGGGTGACGCGGCGAGACAGCGATCAGCGGGGTTAATTGCTACTTGACCGCGTCCGAGGATGGAAAAATGTGGCGTATTTGTATTGACGCGCGGACGAGACAGCCCGATGGGCACACCAAGGTCGGCAGGGCAAGGCACCGCCACGGAAATCAACGGTACTAAATTTTTATGTTAAAAGAAAATTTCAACAGGGATGTGTAAACTTATGTTGCTTGAGGTGATCGGTGATACACTACATAGGTCGGGCTACTTTTGTGGTTGTACCATATTTGATATTTCTGTTTTAAGTAGAGATGGGGAGAGTGTTTTCACGTGTTAAGAGCATATTTTCCTCGTTTTCTTAAACCATATGTATAAGAGAAATTTTACGGTCATAGATTTGATATCTCGGGTATCAAGTTTAATACTAGAGAATACGATTACTCCCGATATGTTTTTAAGTAAATAAGATATAAAAAAGTTTACCCTATGTAAAAGTCACAAAAAAAAAGGTTTTTGCCCTCCTTTAAAAAATAAAATAGTATGAAAAGCGATGATGCCAGTATCATATACTCCCTCCGTTTCACAATGTAAGTCATTATAGCATTTTCCACATTCATATTGATGCTAATGAATCTAGACATATATATTTACTTAGATCCATTAGCATCAATATGAATGTGGGAAATGTTAGAATAACTTACATTGTGAAACGGAGGAACTATATGTTCTATCTACTAAGATTCAAGGCTTAAATTTCCTAAAAAAATTCTGAAGTTTAAATTAAGCCTACACATTCAGATAAAAAAAATCTACCGATTGTTACATGAACTATTTACTACGGTATTTGCCTTCTCTGCCTCTTACTTTGTAGATAGAGTTTAGATTTATTTTTATCAGATGCCAGTATACTCCGTATTTATATATTTTTTAAAATATATAACTATTTTGTTTCTAAAAAAAACTATTTGTGGCAAGCTGGAGATATAAAGGTACGTATATATAAGAGGGCATCCGCCTTGATTACTTAAGACCGTACCAAAAAGATGAACATGATCACAAAGCTTGTTATAGAGTTGTCATGCTCACGTAACCCAACGCCTAATAAATCAAAGGGATCATGATAGGAAAAAAAACATAATTAGAACACTGATTTAAACAAAAAATGAAATGCTAGAGAAACATAAAAAGCAAAATCGTCTAAAATTCCAATTTTCCCTCCATTTTTCATTCTTCGCCACTGTAATCCGATCGTTACCGTGTGTCCGCTTTTCTTCCATCAACTAATACAGCACCTGCGCTCCGCCACATCCATCAAACGATCAGTGAGATTAGTGACTTTAATTTGATTAATCAATTAATTAAATTAATTATCTCTCTCAAGATCAGCGAGTGGCCGTGAGCTGATTACTGTCATCAGTAGTAGTAAACACAGTGATTCCCAGTCAGTTCGATCATGTCACGACGGGCGTTTTCAGGGGGTGATCAAGTTGGACAAGTAAAACGCGATGATCTGACGCGATTTTTCTCCGTACCACATCGCGATTCTCTGCACAGGTCCCCGATCGAGCTCATTGATGGCTTACAGTTACACTTGCCATTAACCAGTGTTTAGTCTCTCTCTTAACTGTACTAGCTGGATTAGTATATTATATTGCTGTCCAAAGCAGAAATCAATCTTAGGCAAAAAAAAAAAAGAAAAAGAAAATGGAAACTAAATCTCTCTGTCTCTCTCTCTGATCTCTAACTAACACTGTAATTAGAGAGAGAAATTAAGTGAGGCTCTTTGGCGCGAACTAGCAGTATTTTTATCCAGCGAGATGGAGGTATCTTGAGCTCTAATCCAGCGAGCTCGAGAGGGGAGTGGCAGCTTGCTTAGAAACCACTTGATCGCTGCCTCACCTCACCACACCACACAAACACCTATTCTCTCTCTCTAGCTCGCTGTCTCTGTGTCTCTCTCTAGCTGAAGTTGCAGGAGTTCTTGGCAAGCTTCCCCATATATACCCGACCACCACCGGGCAACGGTTGATCGATATAGCCAGTGAGGAGAAGGGTTATAGAGGCTGATCGACCATCGATCGACGTCGCGGCGAGCGGCTAGTGTTCGTTGTCGTCGTCGGCGGCGGCGAGGTGGTGGTGGTGGTAGCTACGTAGGTTGTGGACATCGATCTAGAGGTAGAGGCAGGGAGGGGGAGGAATGGGACGGCTGTCGTCGTGCGGCGGCGTGCAGGCGAAGCTGAGGAAGGGGCTTTGGTCTCCCGAGGAAGACGATAAGCTGTACAATCACATCATCCGACATGGCGTCGGCTGCTGGAGCTCCGTCCCCAAGCTCGCAGGCAAGCAAGAACGCACGCAATTCAAATGAGACACCAACTGTTCGATCGATCGATCGATCGCCATTGCCGATTTGGCGAGCTTGATTGGGCTAATTTTGGTTTTTTGGGTCGTGCAGGGTTGCAGCGATGCGGCAAGAGCTGCAGGCTGCGGTGGATCAACTACCTCAGGCCAGACCTGAAGCGCGGGAGCTTCTCGCAGCAGGAGGAGGACCTCATCGTCGCGCTGCACGAGATCCTCGGGAACAGGTCGGTTTCATGTCTTGGATTCTGCATTGCCGTTTCGGAGCTTGCTTGCTTTCTTGCAATGGCGGCAGCCATGGAGGTTGGTCGGAGGGATAAAGGATTTGAGGGGGAATAATGGTGTGGTGCAGGTGGTCGCAGATCGCGTCGCACTTGCCGGGGAGGACGGACAACGAGATCAAGAACTTCTGGAACAGCTGCCTCAAGAAGAAGCTCCGGCAACGCGGCCTCGACCCGGCCACGCACAAGCCCATCGCCGCCGCCGCCGCGGCGGCGACGTCCTCGGAGTCGGCGGTCACCCAGGTGGATGAGGATCACAAGCCCCACGGCGCCGCCGCCGCCGCCGCCGACGGCCTCGCCGCGAACGCCAAGCAGTCGGTGTTCGACCCGTTCCCGGTGACCGACTTCGGCGCCGGCTTCGACCTCGGCGCGGCGAACATGGCGGCGGCGCTGTACGGCTCCCACCCCGACGACGGCGCCGGGTTCGTCGCCGACTACAGCAGCGTGCTCGACGTGTCGGAGAACCTGGGCTACGGCGAGAGCTCCAGCAACAGCAGCAACTGGACCTGCGCCGAGGTGAGCAATGTGCTCGACAGCGAGGTGCTCAACTGGGCCGCCTCGGCCGGCGCCGACGCCGCCGCCAAGGCAGAGCCCTTCGCCGACATGGAGCAGCAGCACAGTGGCTATGGCGGCGAGTATCAGGTGGAAGACGACGCCACGCTGGAGCACAAGTTCTCGCTGCCATGCCATGAGCAGAGCTTGGCTCAATTCGACTTCAACTTGGAATACTTCTGA
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| CDS seq | MIAIYSRTAGLQRCGKSCRLRWINYLRPDLKRGSFSQQEEDLIVALHEILGNRWSQIASHLPGRTDNEIKNFWNSCLKKKLRQRGLDPATHKPIAAAAAAATSSESAVTQVDEDHKPHGAAAAAADGLAANAKQSVFDPFPVTDFGAGFDLGAANMAAALYGSHPDDGAGFVADYSSVLDVSENLGYGESSSNSSNWTCAEVSNVLDSEVLNWAASAGADAAAKAEPFADMEQQHSGYGGEYQVEDDATLEHKFSLPCHEQSLAQFDFNLEYF |
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| Protein seq | MIAIYSRTAGLQRCGKSCRLRWINYLRPDLKRGSFSQQEEDLIVALHEILGNRWSQIASHLPGRTDNEIKNFWNSCLKKKLRQRGLDPATHKPIAAAAAAATSSESAVTQVDEDHKPHGAAAAAADGLAANAKQSVFDPFPVTDFGAGFDLGAANMAAALYGSHPDDGAGFVADYSSVLDVSENLGYGESSSNSSNWTCAEVSNVLDSEVLNWAASAGADAAAKAEPFADMEQQHSGYGGEYQVEDDATLEHKFSLPCHEQSLAQFDFNLEYF |
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| Function | Myb-related protein Hv33 [UniProtKB/Swiss-Prot:P20027] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_05G0420200 | OsMH63_05T0420200-mRNA-1 | Chr05 | 28080632 | 28085119 | + | maker | ||
| CDS seq | ATGATTGCAATTTACAGCAGGACAGCAGGGTTGCAGCGATGCGGCAAGAGCTGCAGGCTGCGGTGGATCAACTACCTCAGGCCAGACCTGAAGCGCGGGAGCTTCTCGCAGCAGGAGGAGGACCTCATCGTCGCGCTGCACGAGATCCTCGGGAACAGGTGGTCGCAGATCGCGTCGCACTTGCCGGGGAGGACGGACAACGAGATCAAGAACTTCTGGAACAGCTGCCTCAAGAAGAAGCTCCGGCAACGCGGCCTCGACCCGGCCACGCACAAGCCCATCGCCGCCGCCGCCGCGGCGGCGACGTCCTCGGAGTCGGCGGTCACCCAGGTGGATGAGGATCACAAGCCCCACGGCGCCGCCGCCGCCGCCGCCGACGGCCTCGCCGCGAACGCCAAGCAGTCGGTGTTCGACCCGTTCCCGGTGACCGACTTCGGCGCCGGCTTCGACCTCGGCGCGGCGAACATGGCGGCGGCGCTGTACGGCTCCCACCCCGACGACGGCGCCGGGTTCGTCGCCGACTACAGCAGCGTGCTCGACGTGTCGGAGAACCTGGGCTACGGCGAGAGCTCCAGCAACAGCAGCAACTGGACCTGCGCCGAGGTGAGCAATGTGCTCGACAGCGAGGTGCTCAACTGGGCCGCCTCGGCCGGCGCCGACGCCGCCGCCAAGGCAGAGCCCTTCGCCGACATGGAGCAGCAGCACAGTGGCTATGGCGGCGAGTATCAGGTGGAAGACGACGCCACGCTGGAGCACAAGTTCTCGCTGCCATGCCATGAGCAGAGCTTGGCTCAATTCGACTTCAACTTGGAATACTTCTGA
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| Protein seq | MIAIYSRTAGLQRCGKSCRLRWINYLRPDLKRGSFSQQEEDLIVALHEILGNRWSQIASHLPGRTDNEIKNFWNSCLKKKLRQRGLDPATHKPIAAAAAAATSSESAVTQVDEDHKPHGAAAAAADGLAANAKQSVFDPFPVTDFGAGFDLGAANMAAALYGSHPDDGAGFVADYSSVLDVSENLGYGESSSNSSNWTCAEVSNVLDSEVLNWAASAGADAAAKAEPFADMEQQHSGYGGEYQVEDDATLEHKFSLPCHEQSLAQFDFNLEYF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 4.859836 | 7.0120775 | 0.1227615 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0543600 | RBH | 0.416626 | 0.562642 | 2.897123 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os05g46610 | RBH | 0.250251 | 0.336124 | 0.688131 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os05g0543600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_05g0025600 | RBH | 0.142731 | 14.799689 | 4.723871 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_05g0025350 | RBH | 0.165335 | 7.620481 | 1.255314 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_05g0025350 | RBH | 0.303727 | 13.530700 | 1.903656 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_05g0025390 | RBH | 0.0 | 0.320852 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_05g0025380 | RBH | 0.0 | 11.259335 | 3.896286 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0482700 | RBH | 3.618405 | 4.1581965 | 1.0469305 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_05g0025040 | RBH | 0.0 | 0.668788 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_05G0431900 | RBH | 4.0953055 | 0.08585 | 0.1003115 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0025210 | RBH | 0.0 | 0.330187 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_05g0025100 | RBH | 0.136853 | 14.222697 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_05g0025300 | RBH | 0.0 | 31.140257 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_05g0025280 | RBH | 0.0 | 0.309409 | 0.427972 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_05g0025340 | RBH | 0.0 | 4.700507 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_05G024780 | RBH | 0.0 | 2.880774 | 1.635383 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_05g0025190 | RBH | 0.0 | 2.976700 | 0.000000 |
| Os XI: R9311 | R9311 | AGIS | R9311C05g20949 | RBH | None | None | None |
| Os XI-adm: HZ | HZ | PKU | OsHZ_05g0299800 | RBH | None | None | None |
| Os XI-adm: J4155S | J4155S | PKU | OsJ4155_05g0300800 | RBH | None | None | None |
| Os XI-adm: LK638S | LK638S | PKU | OsLK638S_05g0287000 | RBH | None | None | None |
| Os XI-adm: XL628S | XL628S | PKU | OsXL628S_05g0305000 | RBH | None | None | None |
| Os GJ-temp: 02428 | 02428 | SICAU | Os02428G0509364300.01 | RBH | None | None | None |
| Os cB: Basmati1 | Basmati1 | SICAU | OsBasmati1G0520597500.01 | RBH | None | None | None |
| Os O.glaberrima: Ogla | OglaRS2 | DIADE | Oglab_024002 | RBH | None | None | None |
| Os XI-1A: CN1 | CN1 | SICAU | OsCN1G0517747300.01 | RBH | None | None | None |
| Os XI-1A: D62 | D62 | SICAU | OsD62G0519703100.01 | RBH | None | None | None |
| Os XI-1A: DG | DG | SICAU | OsDGG0511514900.01 | RBH | None | None | None |
| Os GJ-temp: DHX2 | DHX2 | SICAU | OsDHX2G0513188700.01 | RBH | None | None | None |
| Os XI-adm: FH838 | FH838 | SICAU | OsFH838G0515464500.01 | RBH | None | None | None |
| Os XI-1A: FS32 | FS32 | SICAU | OsFS32G0512723100.01 | RBH | None | None | None |
| Os XI-1A: G46 | G46 | SICAU | OsG46G0510371900.01 | RBH | None | None | None |
| Os XI-adm: G630 | G630 | SICAU | OsG630G0509303100.01 | RBH | None | None | None |
| Os XI-1B: G8 | G8 | SICAU | OsG8G0512521100.01 | RBH | None | None | None |
| Os XI-1A: II32 | II32 | SICAU | OsII32G0519470500.01 | RBH | None | None | None |
| Os XI-1B: J4155 | J4155 | SICAU | OsJ4155G0511706700.01 | RBH | None | None | None |
| Os GJ-temp: Kosh | Kosh | SICAU | OsKoshG0513338700.01 | RBH | None | None | None |
| Os GJ-temp: KY131 | KY131 | SICAU | OsKY131G0511533900.01 | RBH | None | None | None |
| Os GJ-trp: Lemont | Lemont | SICAU | OsLemontG0509373300.01 | RBH | None | None | None |
| Os GJ-adm: LJ | LJ | SICAU | OsLJG0509382300.01 | RBH | None | None | None |
| Os GJ-sbtrp: NamRoo | NamRoo | SICAU | OsNamRooG0513121700.01 | RBH | None | None | None |
| Os XI-1B: R498 | R498 | SICAU | OsR498G0511275900.01 | RBH | None | None | None |
| Os XI-1B: R527 | R527 | SICAU | OsR527G0511581100.01 | RBH | None | None | None |
| Os XI-1B: S548 | S548 | SICAU | OsS548G0525440300.01 | RBH | None | None | None |
| Os XI-2: TM | TM | SICAU | TMG0515274500.01 | RBH | None | None | None |
| Os XI-3: Tumba | Tumba | SICAU | OsTumbaG0510834500.01 | RBH | None | None | None |
| Os XI-adm: WSSM | WSSM | SICAU | OsWSSMG0509323700.01 | RBH | None | None | None |
| Os XI-1B: Y3551 | Y3551 | SICAU | OsY3551G0512476900.01 | RBH | None | None | None |
| Os XI-1B: Y58S | Y58S | SICAU | OsY58SG0512805700.01 | RBH | None | None | None |
| Os XI-adm: YX1 | YX1 | SICAU | OsYX1G0516123500.01 | RBH | None | None | None |
| Os GJ-temp: ZH11 | ZH11 | SICAU | OsZH11G0511189300.01 | RBH | None | None | None |
