Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: Nipponbare_Y3551_OTH0154350

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

OTH

Os GJ-temp: Nipponbare | IRGSP 1.0

Os XI-1B: Y3551 | Y3551

Chr01

36726138

36726209

SV Length:

Query Start:

Query End:

Allele sv Count:

290 bp

37968429

37968718

20

Gene_id	Chromosome	Start	End
OsY3551G0101406600.01	Chr01	37960282	37969958

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
Nipponbare_125827_OTH0153450	Chr01	36726138	36726209	38390549	38390838	290
Nipponbare_127518_OTH0155620	Chr01	36726138	36726209	38360489	38360778	290
Nipponbare_127564_OTH0155390	Chr01	36726138	36726209	38305725	38306014	290
Nipponbare_127742_OTH0154740	Chr01	36726138	36726209	37860971	37861260	290
Nipponbare_132424_OTH0154670	Chr01	36726138	36726209	37981577	37981866	290
Nipponbare_D62_OTH0147020	Chr01	36726138	36726209	37793267	37793556	290
Nipponbare_FH838_OTH0155340	Chr01	36726138	36726209	38351206	38351495	290
Nipponbare_G630_OTH0154830	Chr01	36726138	36726209	38273962	38274251	290
Nipponbare_HZ_OTH0156730	Chr01	36726138	36726209	38339563	38339852	290
Nipponbare_IR64_OTH0158100	Chr01	36726138	36726209	37907582	37907871	290
Nipponbare_J4155_OTH0151070	Chr01	36726138	36726209	38145181	38145470	290
Nipponbare_J4155S_OTH0151580	Chr01	36726138	36726209	38621762	38622051	290
Nipponbare_Lemont_OTH0125540	Chr01	36726138	36726209	37755439	37755728	290
Nipponbare_R498_OTH0153030	Chr01	36726138	36726209	37725980	37726269	290
Nipponbare_R527_OTH0154900	Chr01	36726138	36726209	37929059	37929348	290
Nipponbare_S548_OTH0155110	Chr01	36726138	36726209	37609488	37609777	290
Nipponbare_WSSM_OTH0157020	Chr01	36726138	36726209	37858337	37858626	290
Nipponbare_Y3551_OTH0154350	Chr01	36726138	36726209	37968429	37968718	290
Nipponbare_Y58S_OTH0136540	Chr01	36726138	36726209	37082250	37082539	290
Nipponbare_MH63RS3_OTH0155820	Chr01	36726138	36726209	38545459	38545748	290

>Nipponbare_Y3551_OTH0154350
AAGAAGATGAGATAAGAGATGAGCCACACGCCAATATCTAGTTGGATATGCAGGAGTTCGGCTGAGAGCGTTCCCAGCGCGCACAGTAAACACGGAAAACGGAGCGGTCATTAGCGCGTGATTAATTAAGTATTAGCTAATTTTTTTTAAAAAAATGGATTAATTTGATTTTTTTTAAACAACTTTTGTATAGAAACTTTTTGCAAAAAAATGCACCGTGTAGTAGTTTGAAAAGCGTGCGCGGACGAAAAGTTACTGTGCACGCCGGGAAAACAGCTGCCGAACACAGC