Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: Nipponbare_Y3551_INS0446350

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

INS

Os GJ-temp: Nipponbare | IRGSP 1.0

Os XI-1B: Y3551 | Y3551

Chr04

22738766

22742717

SV Length:

Query Start:

Query End:

Allele sv Count:

3880 bp

29144065

29147944

30 There is no gene in this region.

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
Nipponbare_125827_INS0450420	Chr04	22738766	22739059	33752952	33753241	290
Nipponbare_125827_INS0450420_1	Chr04	22738766	22742717	29657890	29661768	3879
Nipponbare_127518_INS0450990	Chr04	22738766	22742717	28880930	28884809	3880
Nipponbare_127564_INS0452710	Chr04	22738766	22742717	29157054	29160933	3880
Nipponbare_127742_INS0448200	Chr04	22738766	22742717	28910757	28914655	3899
Nipponbare_132424_INS0453910	Chr04	22738766	22742717	29792907	29796805	3899
Nipponbare_CN1_INS0449920	Chr04	22738766	22742717	28308027	28311905	3879
Nipponbare_D62_INS0448870	Chr04	22738766	22742717	28340582	28344462	3881
Nipponbare_DG_INS0449550	Chr04	22738766	22742717	28727461	28731339	3879
Nipponbare_FH838_INS0446290	Chr04	22738766	22742717	28797191	28801069	3879
Nipponbare_FS32_INS0448860	Chr04	22738766	22742717	28420266	28424144	3879
Nipponbare_G46_INS0447990	Chr04	22738766	22742717	27886940	27890818	3879
Nipponbare_G630_INS0447470	Chr04	22738766	22742717	28922502	28926380	3879
Nipponbare_G8_INS0449790	Chr04	22738766	22742717	28619971	28623867	3897
Nipponbare_HZ_INS0447730	Chr04	22738766	22742717	29082424	29086322	3899
Nipponbare_II32_INS0448770	Chr04	22738766	22742717	28839351	28843229	3879
Nipponbare_IR64_INS0450580	Chr04	22738766	22742717	27268280	27272180	3901
Nipponbare_LK638S_INS0449700	Chr04	22738766	22742717	28837617	28841498	3882
Nipponbare_R498_INS0445590	Chr04	22738766	22742717	27802941	27806839	3899
Nipponbare_R527_INS0446010	Chr04	22738766	22742717	28383602	28387500	3899
Nipponbare_R9311_INS0450470	Chr04	22738766	22742717	28991510	28995361	3852
Nipponbare_S548_INS0445870	Chr04	22738766	22742717	27864659	27868557	3899
Nipponbare_TM_INS0448190	Chr04	22738766	22742717	27029296	27033174	3879
Nipponbare_Tumba_INS0452110	Chr04	22738766	22742717	29350371	29354248	3878
Nipponbare_WSSM_INS0448660	Chr04	22738766	22742717	28471679	28475577	3899
Nipponbare_XL628S_INS0449320	Chr04	22738766	22742717	28964745	28968641	3897
Nipponbare_Y3551_INS0446350	Chr04	22738766	22742717	29144065	29147944	3880
Nipponbare_YX1_INS0447320	Chr04	22738766	22742717	27366337	27370235	3899
Nipponbare_ZS97RS3_INS0449500	Chr04	22738766	22742717	29178690	29182568	3879
Nipponbare_MH63RS3_INS0448940	Chr04	22738766	22742717	29403750	29407628	3879

>Nipponbare_Y3551_INS0446350
TGTAGCGCCCGTTCCGTCGTGGCGCCTAGTGGGAAAATTATCTCTTAAAAACCCTAATTGCGAAATTTGTTTCTTTGCTTGTTGTCTAGTGTCCATGCCATCTGAAGATCTCAAATCCCCGATATATCGTCGAGTTCAATTCCGAATCTAAATCCTTCCAAATCAAATCCCTCCGCAAAAGTCTATTTTGCCTCCCCCGGGGTCGATGGGCCGAATCTCTTTCGGCCCATCTCCCCCTCCCTCCCGGCGCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCCCTTCCCCTCGCTCTGCCCGCGCGTGCGCGAGCGCCGCGCCGAGCGCCCCCTCCCCCTCGCTCTCCTTCTCCCCATCCCTGGCGAGCTCCCCGCCCGCGAAGCCGGCCCCCGCGCGCCGTTGTTCGCGCGCGCGCGCCCGCGTGGTTGCCACCCGTGCCGCGCCGCCTGCGCCGTCCGCGTCACCGGCCCCGTTGCCCTGCCGCGCCTGCAGCCGCTTGGCCCCGCAGCCAGCGCGCGTGCCCGAGCCGAGCCACTCAATCCGCCGCGCCTCCCGTTGCAAGCCGCGCGCGAGAGCCGTGGTGGCCGACCGCCTGGTCGCCACCATCGTCAGCGCCTGCCCGCGCCTGTCGCCCGTGTCACCGCCTCGCCGTCATCACCGTCGTCATCGCCTCGGCCCCGCCACTCCGCGCGCAAGCCGCCAAGGGACGGAGGCAGAGCCCCTCCTCCCTCTACCACGTCGCCCCCGCTCCCCTCCTCCTTTTCCCAAAGAGGCAAGGGGCGAGCCCCCTTTCTCTCCCTCATTTTCCCCTTTTTCCCCCCGCCGGCGTCATCCTCCCTCCGTCCTGTCGCCGATTTGGCCGCGAGCGCCGAGCGCCAGCTCGCGCCTTGACCGCCCAAAGTCGGTTTCCAAACCGACATTGCCGCCCTTTAAACCCAGGCGCCCTCCCTTCCTCTTTCCCCCCAATCCTCCCCGTTTCTCGTCCGCGCCATTGCCGCCACCTCCTGTGCTCTGTCTCGCCTCCGCCGTTCATCGCCAAGCACCGGGAGAGCCGGTGCGTTCGTTGACGCGGAAGGGGACTCCGGGCGCTCGTCTTCCTCCTCTTCCCCGGCCCGAGGCCGGAGAGATCACTCCCGCGCCGTCGGCCTCTCGTCACAGCGCCCCGCCTCATCTCGGTAGTGCCTCCCTCCGTTCTTCCTCCTCGTTCCATCTTCCCCCCTTAGTTTTCGGTAGTAGCACGAGTAGCCTCCCCGTAGCTAGCCGGCGCCGCCCCGACCATTGCCGCTGCTCGCCGTGTGCCCGCCACCGTCGCCGCCCGTGCTTCGTAGCACCCGCTCGTCGCCGGCCTCGCTCGGCGTAGCTCCGCCTAATCTGACGCTAGCAACGAATTCCCGTAGCCGCGTAGATGCTCTCACCGCCGGGAATTGGCCCCTCGTGACCTCGTCGCCGTTTCCCCCTTTTCCCTCCGCCGGGCGCCGCTGCCGCAATCCGCCGCCGACGGACTCCCTCCGGCGAATCCAAGCCGTTGGCTCGCTCTCTCTCATTCTCCCTCGTCATCCCGGTGTACGCCCCGTCGCCCCTCATCGTCGCAAGGCGTCCCGGAGAAACCACCGCCGCCCGCCGTCCATTCGCGGCCGGCACCTTCGTCTTCCTCCCGCCAGCCCGCGTGGCAGCCACGTAGGCGCCACGTCGGCGCCAGCTCGGCCGAGATCGGATCGGGCCGACCCCGGTCAGCCCCTCCCGTGCGCGCGTTCCACCGCGAGCCGTGAGGCTACGTGTGGGCCCACCGCATCCGTTCCACCGCGAACCACGCGCGTGCACCGCATCCCTTCCCCGCCCGTGCGCGTGCGCCGCGTGCTCGCTCAGCACGGTGAACCGTGTCACCGACAAGCGGGTCCTACCCGGGACCACGCGTGGTGAGCCCGGTCCACCGGCCCTCCCTCTCCTCCCCTTCCGCGCGCGCGCTTGGGCTGCCTTGGGCCGGTCGGCCCATTTAGCTCGGCCGGACCGCTCCGTTTCTCTCGGGCCGCGCCCTAGCCGCCCGAGGAAAAGTATATTATCCCTCCCTCTTTTCTTTTCTTTTTCAAAAAGGATTTAATTAAATCCTTTTCCTTTAGACCAAAAATCCAATAATCTTAGAAATTCAATATCTTCCCAACCGTAAATCCGTTTGACTCCGTTCCACTTCCAAAATTCCTCAAATCTCGAGATCTATCTAATGGCACGCTTAGAGGTCATTAATAGGGCTTTATTTTCGCCGTTTGTTGAGTTGTCCCGTTTCGCGTGTAGTTTCGGAGCCCGAAGACCCGCAGTGCGAGGATTTTGAGGATCAAGCTCCAGATTTCGAGCAAGGCAAGCCACCTTTGAACATCTTGAGCCTATATTTGAATTTAATTATATTGCTTGAAAAATATTATGCATTGATAGGATCGCACTTAATCTGTTTGTCCCGTCTGCAAGGCAGATTGGCGGACCTACCTAGTTTGTTGCATTTGATCCTTCCTTTGTTAATTGTTATACCATGTTCCCTTGTAACCACCCAGTTGCGCCTCGGGAATCGTGCACTCTGTGCGAGTACCGACGGTCGCCTTCAAACTTCAAATCTGAGTAACAACTTGGGTTTTACAAAAGACTTGGAAAACCCGACACCTGGGTCGGTGCTTGCGAACTAAATGAATTTCCAAAACCGCGGACCGGGGAACGTACCGGGTGTACGGTTTTCCCGCTCTTGCACCTAAGGACCGTTTCCTTAGAATTTCATCCAAACATAAGACAAGTACGACCACATGGGTGGAATGGGACACCCCTGGCTGAGTAACTAGCTTATCAGGGGAGCCTTGATGCCGAGAGACATGTGGATTCGCCGGGGTGGTGTCGGGGAGGACCCCTGGGCTTCCTGGCACAGTATGGTCTGGGACCTAACCTGTTGTTGGTCTGGGACCCCTCTCGTCGGCATATGGTAAACCTGTGTCGGCTTTGGAAATGCCTTGTCATGAAAGCTTGGAGGTCTCCCGACGTGGCTGATCCCCACGGGCTGGGTGATCCGGGTTAGTAATGTCGTGTGGGTAAAGTGTATCCCCTCTGCAGAGGTTAACAAACTGTTCGAACAGCCGTGCCCACGGTCATGGGCGGATGTGAGGTGATTCCTAGCGTAGTTTTGTTTGACTACTGCTTGTGAAATTGCTGTTGTGGAAAGGGGTTCGATGTTTGAAAAATCTGCAGCTGATGGGATCAGCTAGGCCCGGGTGGCCGTTTGAAAGTTGTTGGCCCGGGTGGCCGTTTGAAAAGCTGTTGGCCGGGTGCCAACCTTGATTCAATTCTAAAGACTGATACATTGCACATACTCCGACCGGACAAGACGCACTGTCTTATCCGTGTCGTTTGAGAAGCACTCACTTAGTTGTTTTCAGAAAGGAGTTCAAATAAAATCAATTGTAAAAACAACAGACTTTTCTTGAAGCCTGCATTAAACACTTATTTCCCATGGCTTGCTGAGTACTCCCGTACTCACCCTTGCTCTATATAAATAATCCCCCCAGTTGCTGAAGAAGATGAAGCGGATCCTGCTGATGAGGAGTTCTTCCAAGAGCAAGCCGGCTACGATGAGTATTAGGGTTTCGGCCTAGTTCCCAAGTCGCGCCTGTGTTGTTTGGTCCAAGTCCTGGCTTCCGTTTCCCTTTTGTAATGCAGTTGTGAGCTCGGGATCTGTCCGCAGCCCAACATGACTGTACCTCTACTCTATAATAAAGAGACCTCTGTTGCTGTGATAATCCGTCTTCCTATGATAACAACACTATTTTCTGGGACTGGTATCGATTAACAGGTTAATTTGGAGCGTCACGGGCTAGTTTCGGTCGGTACTAGTCCGGGGCGTGACA