Variation ID: Nipponbare_127742_INS0448200

Variant Type:
Ref Genome:
Query Genome:
Chromosome:
Ref Start:
Ref End:
INS
Os GJ-temp: Nipponbare | IRGSP 1.0
Os XI-1B2: PR 106 | Os127742RS1
Chr04
22738766
22742717
SV Length:
Query Start:
Query End:
Allele sv Count:
3899 bp
28910757
28914655
30
Gene_id Chromosome Start End
OsPr106_04g0022670 Chr04 28906579 28916265
SV_id Chromosome ref_start ref_end query_start query_end length
Nipponbare_125827_INS0450420 Chr04 22738766 22739059 33752952 33753241 290
Nipponbare_125827_INS0450420_1 Chr04 22738766 22742717 29657890 29661768 3879
Nipponbare_127518_INS0450990 Chr04 22738766 22742717 28880930 28884809 3880
Nipponbare_127564_INS0452710 Chr04 22738766 22742717 29157054 29160933 3880
Nipponbare_127742_INS0448200 Chr04 22738766 22742717 28910757 28914655 3899
Nipponbare_132424_INS0453910 Chr04 22738766 22742717 29792907 29796805 3899
Nipponbare_CN1_INS0449920 Chr04 22738766 22742717 28308027 28311905 3879
Nipponbare_D62_INS0448870 Chr04 22738766 22742717 28340582 28344462 3881
Nipponbare_DG_INS0449550 Chr04 22738766 22742717 28727461 28731339 3879
Nipponbare_FH838_INS0446290 Chr04 22738766 22742717 28797191 28801069 3879
Nipponbare_FS32_INS0448860 Chr04 22738766 22742717 28420266 28424144 3879
Nipponbare_G46_INS0447990 Chr04 22738766 22742717 27886940 27890818 3879
Nipponbare_G630_INS0447470 Chr04 22738766 22742717 28922502 28926380 3879
Nipponbare_G8_INS0449790 Chr04 22738766 22742717 28619971 28623867 3897
Nipponbare_HZ_INS0447730 Chr04 22738766 22742717 29082424 29086322 3899
Nipponbare_II32_INS0448770 Chr04 22738766 22742717 28839351 28843229 3879
Nipponbare_IR64_INS0450580 Chr04 22738766 22742717 27268280 27272180 3901
Nipponbare_LK638S_INS0449700 Chr04 22738766 22742717 28837617 28841498 3882
Nipponbare_R498_INS0445590 Chr04 22738766 22742717 27802941 27806839 3899
Nipponbare_R527_INS0446010 Chr04 22738766 22742717 28383602 28387500 3899
Nipponbare_R9311_INS0450470 Chr04 22738766 22742717 28991510 28995361 3852
Nipponbare_S548_INS0445870 Chr04 22738766 22742717 27864659 27868557 3899
Nipponbare_TM_INS0448190 Chr04 22738766 22742717 27029296 27033174 3879
Nipponbare_Tumba_INS0452110 Chr04 22738766 22742717 29350371 29354248 3878
Nipponbare_WSSM_INS0448660 Chr04 22738766 22742717 28471679 28475577 3899
Nipponbare_XL628S_INS0449320 Chr04 22738766 22742717 28964745 28968641 3897
Nipponbare_Y3551_INS0446350 Chr04 22738766 22742717 29144065 29147944 3880
Nipponbare_YX1_INS0447320 Chr04 22738766 22742717 27366337 27370235 3899
Nipponbare_ZS97RS3_INS0449500 Chr04 22738766 22742717 29178690 29182568 3879
Nipponbare_MH63RS3_INS0448940 Chr04 22738766 22742717 29403750 29407628 3879

>Nipponbare_127742_INS0448200
tgtagcgcccgttccgtcgtggcgcctagcgggaaaattatctcttaaaaaccctaattgcgaaatttgtttctttgcttgttgtctagtgtccgtgccatctcaagatctcaaatccccgatatatcgtcgagttcaattccgaatctaaatccttccaaatcaaatccctccgcaaaagtctattttgcctcccccggggtcgatgggccgaatctctttcggcccatctccccctccctctcggcgctctctctctctctctctctctctctccctctctcccttcccctcgctctgcccgcgcgtgcgcgagcgccgcgccgagcgccccctccccctcgctctccttctccccatccctggcgagctccccgcccacgaagccggccccgcgcgccgttgttcgcgcgcgcgcccgcgtggttgccacccgtgccgcgccgcctgcgccgtccgcgtcacccggccccgctgccctgccgcgcctgcagccgctcggccccgcagccagcgcgcgtgcccgagccgagccactcaatccgccgcgcctcccgttgcaagccgcgcgcgagagccgtggtggccgaccgcctggtcgccaccatcgtcagcgcctgcccgcgcctgtcgcccgtgtcaccgcctcaccgtcatcaccgtcgtcatcgcctcggccccgccactccgcgcgcaagccgccaagggacggaggcagagcccctcctccctctaccacgtcgcccccgctcccctcctccttttcccaaagaggcaaggggcgagccccctttctctccctcattttcccctttttccccccgccggcgtcatcctccctccgtcttgtcgccgatttggccgcgagcgccgagcgccagctcgcgccttgaccgcccaaagtcggtttccaaaccgacattgccgccctttaaacccaggcgccctcccttcctctttccccccaatcctccccgtttctcgtccgcgccattgccgccacctcctgtgctctgtctcgcctccgccgttcatcgccaagcaccgggagagctggtgcgttcgttgacgcggaagcggaagggtactccgggcgctcgtcttcctcctcttccccggcccgaggccggagagatcactcccgcgccgtcagcctctcgtcacagcgccccgcctcatctcggtagtgcctccctccgttcttcctcctcgttccatcttccccccttagttttcggtagtagcacgagtagcctccccgtagctagccggcgccgccccgatcgttgccgctgctcgccgtgtgcccgccaccgtcgccgcccgtgctccgtagcacccgctcgtcgccggcctcgctcggcgtagctccgcccaatccgacgctagcaacgaattcccgtagccgcgtagatgctctcaccgccgggaattggcccctcgtgacctcgtcgccgtttcccccttttccctccgccgggcgccgccgccgcaatccgccgccgacggactccctccggcgaatccaagccgttggctcgctccctctcattctccctcgtcatcccggtgtacgccccgtcgcccctcatcgtcgcaaggcgtcccggagaaaccaccgccgcccgccgtccattcgcggccggcgccttcgtcttcctcccgccagcccgcgtggcagccacgtaggcgccacgtcggcgccagctcggccgagatcagatcaggccgaccccggtcagcccctcccgtgcgcgcgttccaccgcgagccgtgaggctgcgcgtgggcccaccgcatccgttccaccgcgaaccacgcgcgtgcaccgcatcccttccccgcccgtgcgcgtgcgccgcgtgctcgctcagcacggtgaaccgtgtcaccgacaagcgggtcccacccgggaccacgcgtggtgagcccggtccaccggccctccctctcctcccctcccgcgcgcgcgcttgggccgccttgggccggtcggcccatttagctcggccggaccgctccgtttctctcgggccgtgccctagccgcccgaggaaaagtctattatccctccctcttttcttttctttttcaaaaaggatttaattaaattcttttcctttagaccaaaaatccaataatcttagaaattcaatatcttcccaaccgtaaatccgtttgactccgttccacttccaaaattcctcaaatctcgagatctatctaatggcacgcttagaggtcattaatagggctttattttcgccgtttgttgagttgtcccgtttcgcgtgtagtttcggagcccgaagacccgcagtgcgaggattttgaggatcaagctccagatttcaagcaaggcaagccacctttgaacatcttgagcctatatttgaatttaattatattgcttgaaaaatattatgcattgataggatcgcacttaatctgtttgtcccgtctgcaaggcagattggcggacctacctagtttgttgcatttgatccttcctttgttaattgttataccatgttcccttgtaaccacccagttgcgcctcgggaatcgtgcactctgtgcgagtaccgacggtcgccttcaaacttcaaatctgagtaacaacttgggtaaaacttgggttttacaaaagacttggaaaacccgacacctgggtcggtgcttgcgaactaaatgaatttccaaaaccgcggaccggggaacgtaccgggtgtacggttttcccgctcttgcacctaaggaccgtttccttggaatttcatccaaacataagacaagtacgaccacatgggtggaatgggacactcctggctgagtaactagcttatcaggggagccttgatgccgagagacatgtggattcgccggggtggtgtcggggaggacccctgggcttcctggcacagtatggtctgggacctaacctgttgttggtctgggacccctctcgtcggcatatggtaaacctgtgtcggctttggaaatgccttgtcatgaaagcttggaggtctcccgacgtggctgatccccacgggctgggtgatccgggttagtaatgtcgtgtgggtaaagtgtaccccctctgcagaggttaacaaactgttcgaacagccgtgcccacggtcatgggcggatgtgaggtgattcctagcgtagttttgtttgactactgcttgtgaaattgctgttgtggaaaggggttcgatgtttaaaaaatctgcagctgatgggatcagctaggcccgggtggccgtttgaaagttgttggcccgggtggccgtttgaaaagctgttggccgggtgccaaccttgattcaattctaaagactgatacattgcacatactccgaccggacaagatgcactgtctcatccgtgtcgtttgagaagcactcacttagttgttttcagaaaggagttcaaataaaatcaattgtaaaaacaacagccttttcttgaagcctgcattaaacacttatttcccatggcttgctgagtactcccgtactcacccttgctctatataaataatCCccccccagttgctgaagaagatgaagcggatcctgctgatgaggagttcttccaagagcaagccggctacgatgagtattagggtttcggcctagttcccaagtcgcgcctgtgttgtttggtccaagtcctggcttccatttcccttttgtaatgcagttgtgagctcgggatctgtccgcagcccaacatgactgtacctctactctataataaagagacctctgttgctgtgataatccgtcttcctgtgataacagcactattttctgggactggtatcgattaacaggttaatttggagcgtcacgggctagttccggtcggtactagtccggggcgtgaca

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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