Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: IR64_MH63RS3_DEL1203560

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

DEL

Os XI-1B1: IR 64 | OsIR64RS1

Os XI-adm: Minghui 63 | MH63RS3

Chr12

5685010

5685756

SV Length:

Query Start:

Query End:

Allele sv Count:

747 bp

5553643

5554389

4

Gene_id	Chromosome	Start	End
OsMH63_12G0088700	Chr12	5553188	5554259

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
IR64_FH838_DEL1203570	Chr12	5685010	5685756	5550078	5550824	747
IR64_R498_DEL1203530	Chr12	5685010	5691112	5562551	5565783	3233
IR64_Y3551_DEL1203510	Chr12	5685010	5685756	5550401	5551147	747
IR64_MH63RS3_DEL1203560	Chr12	5685010	5685756	5553643	5554389	747

>IR64_MH63RS3_DEL1203560
AAACGCCTTAGCCGTGGTATTATAGGGAAATACCACATCACCTTAGCAGGAATTCTCTTCTTCGTTAGCTGCCCGTCAACCTCACCTGGATCATCTCGTCTAATCTTGTATCGTAGTGCTTTACAAACAGCGCATGCTTCTAGGTTCTCGTACTCCTCACCACGATATAGGATACAATCATTCGGACATGCGTGAATCTTCTGAACTTCCAGTCCTAGAGGGCAGACTATCTTCTTAGCCTCGTACGTTGTCTCGGGCAATTTGTTTCCCTCCGGAAGAATGTTCTTGACGAGTTTCAATAAATCGCCAAATGCCTTGTCACTACCACCATTTTTTGCCTTCCATTGCAAGAACTCCAGAGTGGTATCCAACTTTTTGTGCCCCTGCTCGCAACCTGGGAAAAACGACGTTCTGTGATCCTCTAACATCTTGTCCAATTTATGGGCCCCCTTTTCACTTTCGCAGTCCTCCTTGGCATCCTGCAACATCTGACCAAGATCATCTGCAACGTCGTTATAATCAGCATCTCTATCCTCCTCGCCCGTTTGATTTCCTTCAGATCCAGCGTACTGAGCAAAGTCTAGAATATTGTCGTCTTCCACTTCATCTTTTTCCATTTCAACCCCTTGCTCTCCGTGGGATGTCCAACAATTATAGCTTGGCATGAACCCCGACTCAAACAAGTGGAAATGAATAGTCCTGGATGCAGAATACTCCTTCTGATTCTTACACTTATTGCATGGACAA