Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: G46_LJ_DEL1122400

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

DEL

Chr11

13056872

13061270

SV Length:

Query Start:

Query End:

Allele sv Count:

4392 bp

11849613

11854004

24 There is no gene in this region.

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
G46_02428_DEL1118660	Chr11	13056872	13059625	12104462	12107209	2748
G46_117534_DEL1116240	Chr11	13056872	13061270	12618846	12623250	4405
G46_127742_DEL1119060	Chr11	13056872	13061270	13271141	13275545	4405
G46_D62_DEL1111060	Chr11	13056872	13061270	12174892	12179281	4390
G46_FH838_DEL1110440	Chr11	13056872	13082624	14210126	14235871	25746
G46_G630_DEL1119620	Chr11	13056872	13061270	13529537	13533940	4404
G46_HZ_DEL1110830	Chr11	13056872	13330923	12784271	13301730	517460
G46_J4155S_DEL1112440	Chr11	13056872	13330923	12744699	13316009	571311
G46_Kosh_DEL1122870	Chr11	13056872	13061270	11756308	11760700	4393
G46_Lemont_DEL1125820	Chr11	13056872	13061270	12038303	12042693	4391
G46_LJ_DEL1122400	Chr11	13056872	13061270	11849613	11854004	4392
G46_LK638S_DEL1112320	Chr11	13056872	13330923	12780122	13348056	567935
G46_NamRoo_DEL1125370	Chr11	13056872	13061270	11705071	11709468	4398
G46_Nipponbare_DEL1122890	Chr11	13056872	13061270	12068959	12073352	4394
G46_R498_DEL1116510	Chr11	13056872	13061270	13022699	13027103	4405
G46_R527_DEL1118230	Chr11	13056872	13061270	13317937	13322341	4405
G46_R9311_DEL1120360	Chr11	13056872	13061270	13627625	13632033	4409
G46_S548_DEL1116550	Chr11	13056872	13061270	13223912	13228316	4405
G46_Tumba_DEL1116680	Chr11	13056872	13061270	13055090	13059491	4402
G46_XL628S_DEL1111390	Chr11	13056872	13330923	12773331	13342131	568801
G46_YX1_DEL1117980	Chr11	13056872	13061270	12793870	12798273	4404
G46_ZS97RS3_DEL1106790	Chr11	13056872	13322820	12926486	13448820	522335
G46_OglaRS2_DEL1130940	Chr11	13056872	13057665	11730714	11731506	793
G46_MH63RS3_DEL1120190	Chr11	13056872	13061270	13302702	13307106	4405

>G46_LJ_DEL1122400
TGATGAACCCTGAGTTCCTCTCAACACTCAAGGCTGTTGTTGGCCCGATCTTTCGGTGAGTTGTGATAACTACGATTTGGGAGAAACGTTGACGATCCGACTACAACCGTACGAGACGTTGTGTTGCGCCTTAGCGATCGATACACCTCTCCGTAGGTTGTTGATCTTGCCGGTGCAGATCAACCCTATTCCTGCAAGCAAATCGAAGAAACAAGCAAGAACAAGAATAAAGCAATCTGATATTGCAAATAGGAATTTAATACAAATGATAAGTTGGGGTTCCGAAGAACAAGCAGACGGACGGTCTAGCCGACACGCGCGCTGCAAGCAAGTAGCAATGGCTAAACTTTAATCTAACAAAAACCCAAGAAACCCTGAAGGGGTACCTAACTATTTATAGAGGTGGGAGGACGACTAAGAGGGTCCAAGGGTCGTGCTCCACCAGATTGGGGCGCACCCCACATGGGCCCCACATGGGCCAGGGTCCCAAACAAAGTTACAAGCCCATTGGCCCAATACAGGAGACGCAGCACCTTGCTTTTGTGATTGCGGCCAAACGAGATAGATTTCCGAGATGAGGCTGGATCCGTTGGAAGGAGGACTTCGAGAGCTTTCCATCAAGTACTCACGGGCCCAAAACGGAGCACGTATGTAGATTTGGCGGCCGTTTGAAGTCAGCAATGTAACACGTGGCCGAATCAGATTGCAGCACATGGAGGACTTGATCTTGATGTCTTCTTGTTGATTCATGATGTGAGCAATGGTCGTATCCATAGTAGCCATGGTCACATCATCCTCCCCTTCTTCACAGAAAACCGTCCTCGGTTTTTCCATATGGTGCTCTTCGCGCAGTCCACTGAAAACAACCTGTTTCTTGCAATCAAAACAAGACAAACTCGAGACAATATGATTAGCAGTAACATGTCTCTCTAGCTTGCATATTTTATCTGGAACTACAAGATGTTCTATATCTGAACAAATGTAAACTCTATGCACCAAAAATATTCCTCTATCATTATATTCGCCAAAGATATGAAAAATAGCATTAGTTGGACATGGCAAATCAGATTTAGCAAATAATTTCTCCTTCAAATTATCGAGCTCACAAAAATCATCAAACTGAACATAGCCCAAAGTATTTAAAGAAGATAGCAATTCGCGTTCCTCTACTTCATTAGCAATGTGAACAACATGCTTAGAATCAGCACACAAAGAAATAGTAGAACTAACATGTTCATTCACTAGTTGTGGCATGGATATAAGTGAAACATTATCACACAACTCTTCTTTATCACAAGGAACAGCAAGTAAATCAACTTGTGACAAAGGCAACTCAGTAATTGATTCCACTAATGGTTGCTCTACTATAGCATGAAAAGTGGACAAGTGTAGCTCACCTTGAGAATACTCACCTTCATTTCTCTCAGCACCATTTAATTTACCTTGCGAACTTTCTTCAGATAATGTAGCTGCATCAGCCTTCTCCTCATTCGCGAGTGATGGAAGTGACATCTCAAACATATCGTTCTTCTCATTTTGGAGACTTTTCTGAACTTCCTGCAAAACATCAGTGATAGGAGGCACAAGCATATCTTGTTGCTCCATTGGATTCTCCAAAATTTTGCGCTCAACAATGCAAGCAAGCATGAACAATTGGCCTATATGATTATATGTCACATTAACAAGCCCAGCCTGAATATTGAAATTAAGCCCTCTGAAAAATCTAGTCATTGTGTTCTCATTAGATTCTTGTAAACCACTATAAGTGATACAAATTTTAAAATCATGAAAGTACTCCCTAACAGTTTTGTCACCTTGTTTTAGATGTTCCCATTTCTCAAGGAGAGCACGTCTATAGTATGAAAACACAAATCTTTTTCTCATCAGTATTTTGCATTCATCCCAAGTTTCAAGCTTATTCCCCACAGTATGCCACCAAAAAGATGCAGAACCGGTACACTTATTACTAGCAGCCTTAATCATTTGAGCATTAGAAAAATCATACTCATCAAATTGTTTTTTTACTGCTAGCTCCCAATTAATGTATGCAGCGGAATCATACTTTCCATCATAGACTGGTAACTTACATGCAACTTGTGCAAAATTATAGTCATGTACCTCATATGCATCACGTGAAGAAGTCGTCATATCTCGTCGAAGGTGTAGATGTTGACGTTGAGCATGACCATCTTGTTTCCCCTTGCGCAATCCTGCCATGGTTAGCAGCAAACAAGAAACATACACAAGAATATACACGCTCCTATCAACTACTAGGTACTGGCAGCTCAAATCTCACACACACTCAAGCTTTTAACCAAGCTCTTACAAGATATTACCAATGCAAGTGGAATGGTGATGTACACCGACTCAACCAAGCACCCCAATAGAGGTTGGATATATCGATGCCTCGGCAAACACTTGCTGTACGGCTGCAATCAAATCTGTGGAGCTCTGGGTAGGCTTAAATATGTAGCAAAGGAATAGCAAATGCTCAAATCAGAGAACGCAAAGTTGAATAATTGTTCAAAGTCAAGTACCGTGCTGGTCCTAGGCTAGAACGTACTAGAGACGCGAGCCTAGACACAAACGGTACCACAAAATAGCACCAGAAACAACTCAAGCACACTCTGATGTATGAAGTTCAGCTCAAACAAAACAATATTTTCTCTTTTCTTTCTTTCTAATTTCTTCTTTTCTTTTTTTCCTTTTCTTTTCTGATTTTTTTTGGTGCGGATTTTTTTTCTTTTTTTTGCACCTTTCTGCCTTTTTTTTTCTCACTTTTTTTCTTATTTTTTTTAACAAAAACTGACTCAAGGACCTTAATGTAAGATTACAGGGACTCAAACATAAATATAAAATTTATAGGGACTCAAATGTAAAAGTCTAAACCCAAAATTAAAATTATACAAAAAATGGAATGCTGAATTTATGCCGGTTCCGTTTTTCCAAACAGATCTCGAAACCGACACCAAACAAAAATTCGCCAAGGTGTTTGACACAACTCGGAACGGTGGAAGAGAGGGAGGGAGTCGGACTCGGCCAAAGGGGCGAGTGGGACTCGGCCAGGAGGTGGAGTGGATGGCAGCCGAATTTGGTGTATGGGATAAAAAGGAAACTGATTTTTAACCAATCCAATCTACTATATCTTTCCAAAACAAACTTGACTACTTCCAAAATCAGATATGGTAATTCACCTTCCTCCTCTCGTGCACGACACAGGCACGGCCAAAACAAACACACACAAGGATCGGCAAACTCTAGATGCAACTCAAGAACTCCAAAACTAACCGATAGAAACTTCTGAAAACTACAAAAATAGAACCGTGGCAGCGAGCCGATTCCGTTTTCGTAGGTCCCGACAACAACAGAGACACGGTGGCAGCGACGACTGTGGTACAAAACGTGACCAGAACTCGAAACTCTAAACGAACTAGACGCTAAGACCAGCAACACGACGTGACGATGCAACACAAAATTCAACAAAGCAAAAACTGAAAAGAACAATGCAATGGCACAATATGGCTAGGTAAATGATACGAATTTTTTTGTATGGCTATTTTCTGGTTATAGGAAGATAAAAACTCACCGAGCAACGAAAGCTCTGATACCACCTGATGAACCCTGAGTTCCTCTCAACACTCAAGGCTGTTGTTGGCCCGATCTTTCGGTGAGTTGTGATAACTACGATTTGGGAGAAACGTTGACGATCCGACTACAACCGTACGAGACGTTGTGTTGCGCCTTAGCGATCGATACACCTCTCCGTAGGTTGTTGATCTTGCCGGTGCAGATCAACCCTATTCCTGCAAGCAAATCGAAGAAACAAGCAAGAACAAGAATAAAGCAATCTGATATTGCAAATAGGAATTTAATACAAATGATAAGTTGGGGTTCCGAAGAACAAGCAGACGGACGGTCTAGCCGACACGCGCGCTGCAAGCAAGTAGCAATGGCTAAACTTTAATCTAACAAAAACCCAAGAAACCCTGAAGGGGTACCTAACTATTTATAGAGGTGGGAGGACGACTAAGAGGGTCCAAGGGTCGTGCTCCACCAGATTGGGGCGCACCCCACATGGGCCCCACATGGGCCAGGGTCCCAAACAAAGTTACAAGCCCATTGGCCCAATACAGGAGACGCAGCACCTTGCTTTTGTGATTGCGGCCAAACGAGATAGATTTCCGAGATGAGGCTGGATCCGTTGGAAGGAGGACTTCGAGAGCTTTCCATCAAGTACTCACGGGCCCAAAACGGAGCACGTATGTAGATTTGGCGGCCGTTTGAAGTCAGCAATGTAACACGTGGCCGAATCAGATTGCAGCACATGGAGGACTTGATCTTGATGTCTTCTTGTTGATTCATGATGTGAGCAATGGTCGTATCCATAGTAGC