Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: FH838_127564_DEL0429430

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

DEL

Chr04

13597135

13597534

SV Length:

Query Start:

Query End:

Allele sv Count:

400 bp

29152580

29152979

39

Gene_id	Chromosome	Start	End
OsLima_04g0022000	Chr04	29152874	29161903

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
FH838_02428_DEL0435640	Chr04	13597135	13597534	28068477	28068876	400
FH838_117425_DEL0435110	Chr04	13597135	13597534	26487702	26488101	400
FH838_125619_DEL0428780	Chr04	13597135	13597534	28674152	28674551	400
FH838_125827_DEL0427240	Chr04	13597135	13597534	29653418	29653817	400
FH838_127518_DEL0427610	Chr04	13597135	13597534	28876461	28876860	400
FH838_127564_DEL0429430	Chr04	13597135	13597534	29152580	29152979	400
FH838_127742_DEL0424490	Chr04	13597135	13597534	28906285	28906684	400
FH838_128077_DEL0433840	Chr04	13597135	13597534	26347621	26348020	400
FH838_132278_DEL0435670	Chr04	13597135	13597534	27552536	27552935	400
FH838_Azucena_DEL0436720	Chr04	13597135	13597534	26269930	26270329	400
FH838_Basmati1_DEL0436090	Chr04	13597135	13597534	26037459	26037858	400
FH838_CN1_DEL0430720	Chr04	13597135	13597534	28303555	28303954	400
FH838_D62_DEL0428290	Chr04	13597135	13597534	28336112	28336511	400
FH838_DHX2_DEL0434350	Chr04	13597135	13597534	26940689	26941088	400
FH838_G630_DEL0425410	Chr04	13597135	13597534	28918030	28918429	400
FH838_G8_DEL0423970	Chr04	13597135	13597534	28615502	28615901	400
FH838_HZ_DEL0424300	Chr04	13597135	13597534	29077952	29078351	400
FH838_IR64_DEL0427560	Chr04	13597135	13597534	27263808	27264207	400
FH838_J4155_DEL0433090	Chr04	13597135	13597534	27216938	27217337	400
FH838_J4155S_DEL0435040	Chr04	13597135	13597534	27784843	27785242	400
FH838_Kosh_DEL0436000	Chr04	13597135	13597534	27737222	27737621	400
FH838_KY131_DEL0437040	Chr04	13597135	13597534	28165798	28166197	400
FH838_Lemont_DEL0434570	Chr04	13597135	13597534	27069959	27070358	400
FH838_LJ_DEL0436080	Chr04	13597135	13597534	27068470	27068869	400
FH838_NamRoo_DEL0436150	Chr04	13597135	13597534	28024669	28025068	400
FH838_Nipponbare_DEL0434670	Chr04	13597135	13597534	27679732	27680131	400
FH838_R498_DEL0427070	Chr04	13597135	13597534	27798469	27798868	400
FH838_R527_DEL0429750	Chr04	13597135	13597534	28379130	28379529	400
FH838_R9311_DEL0424630	Chr04	13597135	13597534	28987040	28987437	398
FH838_S548_DEL0429440	Chr04	13597135	13597534	27860187	27860586	400
FH838_TM_DEL0427400	Chr04	13597135	13597534	27024824	27025223	400
FH838_Tumba_DEL0429660	Chr04	13597135	13597534	29345900	29346299	400
FH838_WSSM_DEL0423880	Chr04	13597135	13597534	28467208	28467607	400
FH838_Y3551_DEL0430280	Chr04	13597135	13597534	29139593	29139992	400
FH838_Y58S_DEL0429330	Chr04	13597135	13597534	28875648	28876047	400
FH838_YX1_DEL0425300	Chr04	13597135	13597534	27361865	27362264	400
FH838_ZH11_DEL0435850	Chr04	13597135	13597534	27226595	27226994	400
FH838_OglaRS2_DEL0442120	Chr04	13597135	13597718	24354508	24355091	584
FH838_MH63RS3_DEL0430810	Chr04	13597135	13597534	29399278	29399677	400

>FH838_127564_DEL0429430
tttttactgtccttgagcaactgcagtaccaaatcatgactgttgattcgagatcatccaacggtccaaaaggcgtcggtacctcatggtaccgcacctcccattgacgcgataccgtggtatggagggtagttttgtactttcgcgttgtataccgattcacggcttcacgcacgcggcatctgtttcttcgctgtttcgcgagagaggaggaagcgctgggcagaagcgagagaaagaaccctagatggcggcgggaggaggggcatgtagcgaatcctggatcagcgactcgatggcgactagatcGgggatgggtggaggtcattagcgccaggcccaaatcggccaaccgtcgggaGctcgaagatggttgtggcggcgattcatcggcgacggt