Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: CN1_Y3551_OTH0136160

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

OTH

Chr01

37961432

37961503

SV Length:

Query Start:

Query End:

Allele sv Count:

290 bp

37968429

37968718

20

Gene_id	Chromosome	Start	End
OsY3551G0101406600.01	Chr01	37960282	37969958

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
CN1_125827_OTH0135540	Chr01	37961432	37961503	38390549	38390838	290
CN1_127518_OTH0138690	Chr01	37961432	37961503	38360489	38360778	290
CN1_127564_OTH0127610	Chr01	37961432	37961503	38305725	38306014	290
CN1_127742_OTH0130470	Chr01	37961432	37961503	37860971	37861260	290
CN1_132424_OTH0134990	Chr01	37961432	37961503	37981577	37981866	290
CN1_D62_OTH0132890	Chr01	37961432	37961503	37793267	37793556	290
CN1_FH838_OTH0135540	Chr01	37961432	37961503	38351206	38351495	290
CN1_G630_OTH0134780	Chr01	37961432	37961503	38273962	38274251	290
CN1_HZ_OTH0133050	Chr01	37961432	37961503	38339563	38339852	290
CN1_IR64_OTH0135400	Chr01	37961432	37961503	37907582	37907871	290
CN1_J4155_OTH0131050	Chr01	37961432	37961503	38145181	38145470	290
CN1_J4155S_OTH0131550	Chr01	37961432	37961503	38621762	38622051	290
CN1_Lemont_OTH0157970	Chr01	37961432	37961503	37755439	37755728	290
CN1_R498_OTH0131110	Chr01	37961432	37961503	37725980	37726269	290
CN1_R527_OTH0134300	Chr01	37961432	37961503	37929059	37929348	290
CN1_S548_OTH0132220	Chr01	37961432	37961503	37609488	37609777	290
CN1_WSSM_OTH0130680	Chr01	37961432	37961503	37858337	37858626	290
CN1_Y3551_OTH0136160	Chr01	37961432	37961503	37968429	37968718	290
CN1_Y58S_OTH0138120	Chr01	37961432	37961503	37082250	37082539	290
CN1_MH63RS3_OTH0136590	Chr01	37961432	37961503	38545459	38545748	290

>CN1_Y3551_OTH0136160
AAGAAGATGAGATAAGAGATGAGCCACACGCCAATATCTAGTTGGATATGCAGGAGTTCGGCTGAGAGCGTTCCCAGCGCGCACAGTAAACACGGAAAACGGAGCGGTCATTAGCGCGTGATTAATTAAGTATTAGCTAATTTTTTTTAAAAAAATGGATTAATTTGATTTTTTTTAAACAACTTTTGTATAGAAACTTTTTGCAAAAAAATGCACCGTGTAGTAGTTTGAAAAGCGTGCGCGGACGAAAAGTTACTGTGCACGCCGGGAAAACAGCTGCCGAACACAGC