Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: Basmati1_125827_INS1125900

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

INS

Os cB: Basmati1 | Basmati1

Os XI-3B2: LIU XU | Os125827RS1

Chr11

12491578

SV Length:

Query Start:

Query End:

Allele sv Count:

333 bp

13688377

13688045

31

Gene_id	Chromosome	Start	End
OsLiXu_11g0011350	Chr11	13686075	13692462

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
Basmati1_117534_INS1117370	Chr11	12491578	12491578	12715413	12715081	333
Basmati1_125619_INS1125000	Chr11	12491578	12491578	12682165	12682497	333
Basmati1_125827_INS1125900	Chr11	12491578	12491578	13688377	13688045	333
Basmati1_127564_INS1123390	Chr11	12491578	12491578	12542174	12542506	333
Basmati1_127652_INS1126910	Chr11	12491578	12491578	12514542	12514874	333
Basmati1_127742_INS1123100	Chr11	12491578	12491578	13367681	13367349	333
Basmati1_132424_INS1124790	Chr11	12491578	12491578	12599245	12599577	333
Basmati1_CN1_INS1124480	Chr11	12491578	12491578	14184703	14184371	333
Basmati1_DG_INS1124310	Chr11	12491578	12491578	14771889	14771557	333
Basmati1_FH838_INS1125850	Chr11	12491578	12491578	14374740	14374408	333
Basmati1_G46_INS1124490	Chr11	12491578	12491578	13223127	13222795	333
Basmati1_G630_INS1121990	Chr11	12491578	12491578	13626067	13625735	333
Basmati1_G8_INS1122470	Chr11	12491578	12491578	12707070	12706738	333
Basmati1_HZ_INS1126750	Chr11	12491578	12491578	13135405	13135737	333
Basmati1_II32_INS1122170	Chr11	12491578	12491578	14243496	14243828	333
Basmati1_IR64_INS1124750	Chr11	12491578	12491578	12715604	12715272	333
Basmati1_J4155_INS1122140	Chr11	12491578	12491578	12498923	12499255	333
Basmati1_J4155S_INS1124940	Chr11	12491578	12491578	13149644	13149976	333
Basmati1_R498_INS1122830	Chr11	12491578	12491578	13119238	13118906	333
Basmati1_R527_INS1123630	Chr11	12491578	12491578	13414478	13414146	333
Basmati1_R9311_INS1122720	Chr11	12491578	12491578	13297703	13297371	333
Basmati1_S548_INS1123280	Chr11	12491578	12491578	13320451	13320119	333
Basmati1_TM_INS1123260	Chr11	12491578	12491578	14098831	14098499	333
Basmati1_Tumba_INS1120640	Chr11	12491578	12491578	13151618	13151286	333
Basmati1_WSSM_INS1123530	Chr11	12491578	12491578	12924427	12924095	333
Basmati1_XL628S_INS1125300	Chr11	12491578	12491578	13175782	13176114	333
Basmati1_Y3551_INS1121990	Chr11	12491578	12491578	12995127	12995459	333
Basmati1_Y58S_INS1121040	Chr11	12491578	12491578	13881635	13881967	333
Basmati1_YX1_INS1122160	Chr11	12491578	12491578	12889145	12888813	333
Basmati1_ZS97RS3_INS1125100	Chr11	12491578	12491578	13282456	13282788	333
Basmati1_MH63RS3_INS1122520	Chr11	12491578	12491578	13399251	13398919	333

>Basmati1_125827_INS1125900
tttgtagggagtaccatcactattttctgatcttagcccattgtatgagcaacctggcaaggtaatagcagttatgcttctcaaaatcattttttgtacttctttttctctgttgtagcatgatctttcagattgccctacataatgtttattttttatacctatagccatattgattacttcagatttgacatggaaaaatgtgaaatatttaaaagaactcagattcagtcagaactattgtgtaagcatgcatagaaagctaccctaaatagacttgatgcccatttgtcaagtacagcctacatgtgaagtaatctaatacaagcagtt