Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: Azucena_CN1_DEL0507110

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

DEL

Os GJ-trop1: Azucena | AzucenaRS1

Os XI-1A: CN1 | CN1

Chr05

4541049

4544026

SV Length:

Query Start:

Query End:

Allele sv Count:

2986 bp

7301196

7304181

25 There is no gene in this region.

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
Azucena_117534_DEL0507670	Chr05	4541049	4544026	7197681	7200663	2983
Azucena_125619_DEL0507580	Chr05	4541049	4544026	7159014	7161996	2983
Azucena_125827_DEL0507040	Chr05	4541049	4544026	7284939	7287924	2986
Azucena_127518_DEL0507310	Chr05	4541049	4544026	7378611	7381596	2986
Azucena_127652_DEL0507710	Chr05	4541049	4544026	7328677	7331661	2985
Azucena_132424_DEL0507340	Chr05	4541049	4544026	7309561	7312546	2986
Azucena_CN1_DEL0507110	Chr05	4541049	4544026	7301196	7304181	2986
Azucena_D62_DEL0506930	Chr05	4541049	4544026	7248954	7251939	2986
Azucena_FH838_DEL0507000	Chr05	4541049	4544026	7542819	7545804	2986
Azucena_FS32_DEL0506930	Chr05	4541049	4544026	7223626	7226611	2986
Azucena_G46_DEL0507120	Chr05	4541049	4544026	7242724	7245709	2986
Azucena_G630_DEL0505150	Chr05	4541049	4544026	7316665	7319649	2985
Azucena_HZ_DEL0506740	Chr05	4541049	4544026	7461844	7464829	2986
Azucena_J4155_DEL0506150	Chr05	4541049	4544026	7395303	7398288	2986
Azucena_J4155S_DEL0505990	Chr05	4541049	4544026	7503236	7506221	2986
Azucena_LK638S_DEL0507050	Chr05	4541049	4544026	7361135	7364120	2986
Azucena_R498_DEL0506540	Chr05	4541049	4544026	7626276	7629261	2986
Azucena_S548_DEL0507310	Chr05	4541049	4544026	7379687	7382672	2986
Azucena_Tumba_DEL0507280	Chr05	4541049	4544026	7616785	7619769	2985
Azucena_WSSM_DEL0506790	Chr05	4541049	4544026	7452265	7455226	2962
Azucena_XL628S_DEL0506910	Chr05	4541049	4544026	7351315	7354300	2986
Azucena_Y3551_DEL0506790	Chr05	4541049	4544026	7388934	7391919	2986
Azucena_YX1_DEL0506950	Chr05	4541049	4544026	7496119	7499104	2986
Azucena_ZS97RS3_DEL0507110	Chr05	4541049	4544026	7306332	7309317	2986
Azucena_MH63RS3_DEL0507290	Chr05	4541049	4544026	7462862	7465847	2986

>Azucena_CN1_DEL0507110
TGTCACGCCCGGAATTTCTATCCAAAATTCCAAACGCTTACATGTGTGTGAACCCTCGTCCAGGAATCAGCCGAGGCACACAATAACAAATTGATAATAGAGTACAATTATTACTCTAATTAATAAGCGTATAAAATGTCATTACAGAGGTAGATAGTTCCTCTCAATCAATAAAGATCTAAGCAGCGGAAAATAAAATAAACGGCGCAAACGGCTCCACTCCATAGGCAGTTTGACCAGGGCTACACCTAATCCTCCACACCATCAGCTTCACTGTAGAACTCTTCCTCTGATGAATGATTGCAAGGTGAGTATATGATATACTCAGCAAGCCACGCAGCAAATATGCAAGTGCACAGGATAACAAAGGATGGCATAGTAGGGTTTCATTTGCAAAAGCAGCATTTAGCAAACATTTGAGAATTTAATAAAATAGTTAAGTAATTAAACAATATTAATCCAACGCTATACAACATACCCTGTTGTATAGGCCCAACCATTCTGAACAACCATCCCGGCTGCACAGTTCTATCTCCAAACCAGGAATATACCATTCCAAACCAGGAGCTAATCAAATTATTACCAATTAAAGCACCTTTTATTATGATGAGAAGGGTGAGACCAATCACGAAAGACATTGTTAGACCCGCCCATAACCGCGGGCACGGCTATTCGAATAGTTTTACTCTGATCAGAGGTGTACCACTGTACCCACAAGACACAACCCCACATCATGTCACCATGTGCCTCAATACCACCACGGTACCTCGGAAAGGAGTTGTGACAATACCCCTTGCATAACACAATCCACTGCAGCGCACCTTCCTGGATCATAATCACCCCCTTATAAACAAGGCATGGACTCCCCAGCGACCCCCGTGGGCTTATCTCCGCCACTTCTCAGTCTGGTGCCCCGCAATGAACCATGCTATACAAAAGATAAAGCCGTTGCCCACGCTGGCTTGTGGTTGGCACGGTTAATGTTTCACAACCGAAACTCGTGAACCGGTCCTTAATTGTCATGAGCACAACCATCAAAACCATGTGCTCACAACCCACCATTACCAGGTTTTAGTTGGCAAATAATTAATTAACAAATCACGATTGGCCATCGTGAACTATCATTAAGCCATCATTAAATTATAGTGATTCATAAGTTATCCCAATAGTGTGCTAATGTTTCTAAGCAGGGCTAAGCAATTATATCTAATACATCTAGTTGAACCAACATATAGAGCTCAACTAGTCAAGTTATAATAACCCAAGGTATCAAGGAATAAGGTAATCAAGAACAAAAGGGCTATAACAAACAATAGGTTAATTCCACCCAATGACATTCGAAAATAAATGCAATAGTTGAAAAGAAACAATAGCTTTAAATAGGATCAACATGCTCAAAGGGTTGTTTGGGATCTGTGTGACTTGCCTTGCTGGCCTTGGAACTCTTCAAACTCTTCTCCGGCGAAAACGGACTCTCCGGAAACGACGGAATCTAAGCAGAAAGAAGCAAAATCACCAAAACAGCACATAAACAAGCATGAACAGTACATGTGGATATTTTTAACATGTAGATCTCAATTTTAGAAAAATTTAGAGACTTAAACCAACTAAATCGGAGCTAAGATGAATTAGTTATGAATTTTTAAAAGATTAAATCGGATTAAAACACTTAAATTGATTTTGATTGAATTATGACGCAATAATGAATTATTTTTGAAAAGGAAAAGAGGATTTATTGCGTCAGCGGCTAGGGTTTCGGTGGACCGGACGCACGGGCGACGGCTCACGCGAACGGACGGCCGAGATCGACTTGATCCAAAACGGACGGCCGAGATCGAACGGTCCACGACCGGCTCACAGCGAACGGCCCCGATGACGTCGGCGATGACGTCACCACCGGCGGCGGCGGCTCGGGCTTGCATGCTCGCCGGCGAACGACGGCACGGCGGCGCGAACGGAAGGCACCAACAGGTAGAGCGCAATGCGGCGAACTCACCGGTGACCAAAAGAGCGGCGGAAGATCAACAGACGGCGACGGCGACGAGGAGGAAGCGGCGGCAAACTTCGGGTCGACGGCGGCGACGGTGCTCCGGCGGTCTTCGGCGGCGGCGAAGGAGCGGACGAGAACGGCGGCAACTTGGCGATCACGACGGTGGCCTTGCCGAGCGATGATGACGACCGAGACGGCGGCGGCGCACGGCTGGAGCGACGGCTACGACGGCGGCGCTAGGTTGCACGGCGCTAGAACTCTTCCGGCGACGAGAGGCGAAGGCGAAGGTGGCGACGGGTAGAGGAGACACCGGGGAACCTTTTAAAGGGGCTCGGAGGCGACGGCGAAGGCCCACGGCGACTGGCGACGAGAAGGAAGGTTTAGGGTTCGGAGGAGAGAGACGAATCCGATTCGAACTCGATTCCAACGATTTCCAAAACGAATTAGCCGATGTTTCCAAAAGAGAAAAGGTAGAGGAAATCCCGGAGATTGTTTCCCCTCTATCAATTCGGCCGGAAACGGAAAGGATCGATCGAATTTGGAAGGGAACGGCGGCGGCGCGAAACTAGGGTTTCGGGCGGCGGCGGCCGGAGATTGACGACGACCCTGACAGGTGGGCCCCACCTGTCAGCGGGCGGATGCGCGCGCGCGCGGCGGCGGACTGGGCCGGACTGGGCCGAGGAGAGAGAGAGAGCGGTTTTGGGCCGACTTTCGGCCCAAAGCCAAAAGAGACTTTTTAAAACCTTTTTCAATTTAAATTATTCATGAAATGCAATTCCATTTATTAAAAATACTTCCTTAGCTCAAATAAATCCCAGAAAAATCTAGGAATTATAGAATTAAGCAAAGTATTTAATGAAATTTTATCTGGCCCCATTTTATATTGGAATTTATTAATTAAAAAATTAGATCTTCTCTTCAAGACTTTTAAAATTATTTCTAAAAATTCCAATTAAACAACCATTTATATATTTTGAATTTTTAGGGTGTGACAAA