Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: 132278_Y3551_TRA0111310

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

TRA

Os GJ-subtrp: CHAO MEO | Os132278RS1

Os XI-1B: Y3551 | Y3551

Chr01

6644426

6644662

SV Length:

Query Start:

Query End:

Allele sv Count:

239 bp

37968484

37968722

14

Gene_id	Chromosome	Start	End
OsY3551G0101406600.01	Chr01	37960282	37969958

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
132278_125827_TRA0109740	Chr01	6644426	6644662	38390604	38390842	239
132278_127518_TRA0110560	Chr01	6644426	6644662	38360544	38360782	239
132278_127742_TRA0111350	Chr01	6644426	6644662	37861026	37861264	239
132278_132424_TRA0110390	Chr01	6644426	6644662	37981632	37981870	239
132278_FH838_TRA0111260	Chr01	6644426	6644662	38351261	38351499	239
132278_G630_TRA0111350	Chr01	6644426	6644662	38274017	38274255	239
132278_IR64_TRA0110970	Chr01	6644426	6644662	37907637	37907875	239
132278_J4155_TRA0109580	Chr01	6644426	6644662	38145236	38145474	239
132278_J4155S_TRA0109410	Chr01	6644426	6644662	38621817	38622055	239
132278_Lemont_TRA0105190	Chr01	6644426	6644662	37755494	37755732	239
132278_R527_TRA0111780	Chr01	6644426	6644662	37929114	37929352	239
132278_Y3551_TRA0111310	Chr01	6644426	6644662	37968484	37968722	239
132278_Y58S_TRA0108960	Chr01	6644426	6644662	37082305	37082543	239
132278_MH63RS3_TRA0111140	Chr01	6644426	6644662	38545514	38545752	239

>132278_Y3551_TRA0111310
GTTCGGCTGAGAGCGTTCCCAGCGCGCACAGTAAACACGGAAAACGGAGCGGTCATTAGCGCGTGATTAATTAAGTATTAGCTAATTTTTTTTAAAAAAATGGATTAATTTGATTTTTTTTAAACAACTTTTGTATAGAAACTTTTTGCAAAAAAATGCACCGTGTAGTAGTTTGAAAAGCGTGCGCGGACGAAAAGTTACTGTGCACGCCGGGAAAACAGCTGCCGAACACAGCCTTA