Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: 128077_ZS97RS3_INS1122300

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

INS

Os GJ-trop2: KETAN NANGKA | Os128077RS1

Os XI-1A: Zhenshan 97 | ZS97RS3

Chr11

12252401

SV Length:

Query Start:

Query End:

Allele sv Count:

333 bp

13282788

13282456

33 There is no gene in this region.

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
128077_117534_INS1118590	Chr11	12252401	12252401	12715081	12715413	333
128077_125619_INS1121510	Chr11	12252401	12252401	12682497	12682165	333
128077_125827_INS1120750	Chr11	12252401	12252401	13688045	13688377	333
128077_127564_INS1121110	Chr11	12252401	12252401	12542506	12542174	333
128077_127652_INS1123580	Chr11	12252401	12252401	12514874	12514542	333
128077_127742_INS1122180	Chr11	12252401	12252401	13367349	13367681	333
128077_132424_INS1122210	Chr11	12252401	12252401	12599577	12599245	333
128077_CN1_INS1123350	Chr11	12252401	12252401	14184371	14184703	333
128077_DG_INS1122710	Chr11	12252401	12252401	14771557	14771889	333
128077_FH838_INS1123450	Chr11	12252401	12252401	14374408	14374740	333
128077_G46_INS1122510	Chr11	12252401	12252401	13222795	13223127	333
128077_G630_INS1122040	Chr11	12252401	12252401	13625735	13626067	333
128077_G8_INS1121960	Chr11	12252401	12252401	12706738	12707070	333
128077_HZ_INS1122000	Chr11	12252401	12252401	13135737	13135405	333
128077_II32_INS1121570	Chr11	12252401	12252401	14243828	14243496	333
128077_IR64_INS1121050	Chr11	12252401	12252401	12715272	12715604	333
128077_J4155_INS1119850	Chr11	12252401	12252401	12499255	12498923	333
128077_J4155S_INS1120610	Chr11	12252401	12252401	13149976	13149644	333
128077_LK638S_INS1121150	Chr11	12252401	12252401	13182026	13181694	333
128077_R498_INS1121870	Chr11	12252401	12252401	13118906	13119238	333
128077_R527_INS1122410	Chr11	12252401	12252401	13414146	13414478	333
128077_R9311_INS1123150	Chr11	12252401	12252401	13297371	13297703	333
128077_S548_INS1122950	Chr11	12252401	12252401	13320119	13320451	333
128077_TM_INS1122530	Chr11	12252401	12252401	14098499	14098831	333
128077_TM_INS1122530_1	Chr11	12252401	12322820	14098832	14195585	96754
128077_Tumba_INS1121840	Chr11	12252401	12252401	13151286	13151618	333
128077_WSSM_INS1120380	Chr11	12252401	12252401	12924095	12924427	333
128077_XL628S_INS1121110	Chr11	12252401	12252401	13176114	13175782	333
128077_Y3551_INS1121530	Chr11	12252401	12252401	12995459	12995127	333
128077_Y58S_INS1120360	Chr11	12252401	12252401	13881967	13881635	333
128077_YX1_INS1122320	Chr11	12252401	12252401	12888813	12889145	333
128077_ZS97RS3_INS1122300	Chr11	12252401	12252401	13282788	13282456	333
128077_MH63RS3_INS1122890	Chr11	12252401	12252401	13398919	13399251	333

>128077_ZS97RS3_INS1122300
AACTGCTTGTATTAGATTACTTCACATGTAGGCTGTACTTGACAAATGGGCATCAAGTCTATTTAGGGTAGCTTTCTATGCATGCTTACACAATAGTTCTGACTGAATCTGAGTTCTTTTAAATATTTCACATTTTTCCATGTCAAATCTGAAGTAATCAATATGGCTATAGGTATAAAAAATAAACATTATGTAGGGCAATCTGAAAGATCATGCTACAACAGAGAAAAAGAAGTACAAAAAATGATTTTGAGAAGCATAACTGCTATTACCTTGCCAGGTTGCTCATACAATGGGCTAAGATCAGAAAATAGTGATGGTACTCCCTACAAA