Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: 128077_Y3551_OTH0151190

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

OTH

Os GJ-trop2: KETAN NANGKA | Os128077RS1

Os XI-1B: Y3551 | Y3551

Chr01

36924044

36924115

SV Length:

Query Start:

Query End:

Allele sv Count:

290 bp

37968429

37968718

20

Gene_id	Chromosome	Start	End
OsY3551G0101406600.01	Chr01	37960282	37969958

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
128077_125827_OTH0152970	Chr01	36924044	36924115	38390549	38390838	290
128077_127518_OTH0153950	Chr01	36924044	36924115	38360489	38360778	290
128077_127564_OTH0152920	Chr01	36924044	36924115	38305725	38306014	290
128077_127742_OTH0152740	Chr01	36924044	36924115	37860971	37861260	290
128077_132424_OTH0152930	Chr01	36924044	36924115	37981577	37981866	290
128077_D62_OTH0147090	Chr01	36924044	36924115	37793267	37793556	290
128077_FH838_OTH0151750	Chr01	36924044	36924115	38351206	38351495	290
128077_G630_OTH0151910	Chr01	36924044	36924115	38273962	38274251	290
128077_HZ_OTH0154060	Chr01	36924044	36924115	38339563	38339852	290
128077_IR64_OTH0156080	Chr01	36924044	36924115	37907582	37907871	290
128077_J4155_OTH0149740	Chr01	36924044	36924115	38145181	38145470	290
128077_J4155S_OTH0151290	Chr01	36924044	36924115	38621762	38622051	290
128077_Lemont_OTH0122110	Chr01	36924044	36924115	37755439	37755728	290
128077_R498_OTH0150060	Chr01	36924044	36924115	37725980	37726269	290
128077_R527_OTH0152270	Chr01	36924044	36924115	37929059	37929348	290
128077_S548_OTH0152820	Chr01	36924044	36924115	37609488	37609777	290
128077_WSSM_OTH0153290	Chr01	36924044	36924115	37858337	37858626	290
128077_Y3551_OTH0151190	Chr01	36924044	36924115	37968429	37968718	290
128077_Y58S_OTH0135870	Chr01	36924044	36924115	37082250	37082539	290
128077_MH63RS3_OTH0152940	Chr01	36924044	36924115	38545459	38545748	290

>128077_Y3551_OTH0151190
AAGAAGATGAGATAAGAGATGAGCCACACGCCAATATCTAGTTGGATATGCAGGAGTTCGGCTGAGAGCGTTCCCAGCGCGCACAGTAAACACGGAAAACGGAGCGGTCATTAGCGCGTGATTAATTAAGTATTAGCTAATTTTTTTTAAAAAAATGGATTAATTTGATTTTTTTTAAACAACTTTTGTATAGAAACTTTTTGCAAAAAAATGCACCGTGTAGTAGTTTGAAAAGCGTGCGCGGACGAAAAGTTACTGTGCACGCCGGGAAAACAGCTGCCGAACACAGC