Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: 127652_Y3551_OTH0143500

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

OTH

Os cA2: NATEL BORO | Os127652RS1

Os XI-1B: Y3551 | Y3551

Chr01

37201165

37201236

SV Length:

Query Start:

Query End:

Allele sv Count:

290 bp

37968429

37968718

20

Gene_id	Chromosome	Start	End
OsY3551G0101406600.01	Chr01	37960282	37969958

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
127652_125827_OTH0142910	Chr01	37201165	37201236	38390549	38390838	290
127652_127518_OTH0140120	Chr01	37201165	37201236	38360489	38360778	290
127652_127564_OTH0143160	Chr01	37201165	37201236	38305725	38306014	290
127652_127742_OTH0142320	Chr01	37201165	37201236	37860971	37861260	290
127652_132424_OTH0138710	Chr01	37201165	37201236	37981577	37981866	290
127652_D62_OTH0142420	Chr01	37201165	37201236	37793267	37793556	290
127652_FH838_OTH0143200	Chr01	37201165	37201236	38351206	38351495	290
127652_G630_OTH0143230	Chr01	37201165	37201236	38273962	38274251	290
127652_HZ_OTH0142070	Chr01	37201165	37201236	38339563	38339852	290
127652_IR64_OTH0142720	Chr01	37201165	37201236	37907582	37907871	290
127652_J4155_OTH0143960	Chr01	37201165	37201236	38145181	38145470	290
127652_J4155S_OTH0146090	Chr01	37201165	37201236	38621762	38622051	290
127652_Lemont_OTH0153740	Chr01	37201165	37201236	37755439	37755728	290
127652_R498_OTH0140770	Chr01	37201165	37201236	37725980	37726269	290
127652_R527_OTH0143160	Chr01	37201165	37201236	37929059	37929348	290
127652_S548_OTH0144660	Chr01	37201165	37201236	37609488	37609777	290
127652_WSSM_OTH0144480	Chr01	37201165	37201236	37858337	37858626	290
127652_Y3551_OTH0143500	Chr01	37201165	37201236	37968429	37968718	290
127652_Y58S_OTH0150060	Chr01	37201165	37201236	37082250	37082539	290
127652_MH63RS3_OTH0142090	Chr01	37201165	37201236	38545459	38545748	290

>127652_Y3551_OTH0143500
AAGAAGATGAGATAAGAGATGAGCCACACGCCAATATCTAGTTGGATATGCAGGAGTTCGGCTGAGAGCGTTCCCAGCGCGCACAGTAAACACGGAAAACGGAGCGGTCATTAGCGCGTGATTAATTAAGTATTAGCTAATTTTTTTTAAAAAAATGGATTAATTTGATTTTTTTTAAACAACTTTTGTATAGAAACTTTTTGCAAAAAAATGCACCGTGTAGTAGTTTGAAAAGCGTGCGCGGACGAAAAGTTACTGTGCACGCCGGGAAAACAGCTGCCGAACACAGC